Wall clock time and date at job start Tue Mar 31 2020 11:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47428 * 2 1 4 4 C 1.52995 * 109.47063 * 120.00105 * 2 1 3 5 5 C 1.50694 * 109.47199 * 295.00132 * 4 2 1 6 6 H 1.08004 * 120.00184 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00005 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00147 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99992 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47217 * 89.99601 * 9 7 5 11 11 H 1.48495 * 109.47395 * 210.00082 * 9 7 5 12 12 H 1.48507 * 109.47035 * 330.00228 * 9 7 5 13 13 C 1.53005 * 109.46930 * 240.00114 * 2 1 3 14 14 N 1.46900 * 109.47161 * 54.88872 * 13 2 1 15 15 C 1.47898 * 110.99978 * 176.77854 * 14 13 2 16 16 C 1.53994 * 107.05876 * 214.16153 * 15 14 13 17 17 C 1.54596 * 105.13918 * 1.21896 * 16 15 14 18 18 C 1.48533 * 110.99700 * 59.38282 * 14 13 2 19 19 H 1.09000 * 110.67168 * 41.28599 * 18 14 13 20 20 C 1.52997 * 110.66882 * 278.15331 * 18 14 13 21 21 C 1.50705 * 109.47496 * 178.26344 * 20 18 14 22 22 O 1.21252 * 119.99473 * 354.54439 * 21 20 18 23 23 C 1.47159 * 119.99981 * 174.54254 * 21 20 18 24 24 C 1.39855 * 120.17497 * 359.72697 * 23 21 20 25 25 C 1.37890 * 119.82463 * 179.73719 * 24 23 21 26 26 C 1.38408 * 120.16908 * 0.53543 * 25 24 23 27 27 C 1.38399 * 120.35159 * 359.72180 * 26 25 24 28 28 C 1.37884 * 120.17245 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47124 * 67.36598 * 1 2 3 30 30 H 1.08993 * 109.47287 * 187.36627 * 1 2 3 31 31 H 1.08999 * 109.47041 * 307.36951 * 1 2 3 32 32 H 1.09004 * 109.47139 * 54.99563 * 4 2 1 33 33 H 1.08999 * 109.47385 * 174.99721 * 4 2 1 34 34 H 0.96997 * 120.00029 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46739 * 174.88928 * 13 2 1 36 36 H 1.09002 * 109.46729 * 294.88790 * 13 2 1 37 37 H 1.08997 * 109.91533 * 333.51043 * 15 14 13 38 38 H 1.08995 * 109.92185 * 94.80428 * 15 14 13 39 39 H 1.08996 * 110.31438 * 120.13956 * 16 15 14 40 40 H 1.09005 * 110.30170 * 242.20974 * 16 15 14 41 41 H 1.09005 * 110.72180 * 140.31932 * 17 16 15 42 42 H 1.08998 * 110.72702 * 263.60350 * 17 16 15 43 43 H 1.09005 * 109.47477 * 298.26490 * 20 18 14 44 44 H 1.08998 * 109.47075 * 58.26054 * 20 18 14 45 45 H 1.07994 * 120.08512 * 359.97438 * 24 23 21 46 46 H 1.07994 * 119.91524 * 180.23351 * 25 24 23 47 47 H 1.08000 * 119.82472 * 179.69178 * 26 25 24 48 48 H 1.07996 * 119.91508 * 180.02562 * 27 26 25 49 49 H 1.08002 * 120.09112 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0806 0.9745 2.3757 7 6 1.9932 -0.4018 3.7283 8 7 2.6764 -1.5188 3.8511 9 14 1.4996 0.5632 5.2496 10 1 0.1725 0.0952 5.7237 11 1 2.5093 0.3534 6.3181 12 1 1.4246 2.0085 4.9163 13 6 2.0400 -0.7213 -1.2493 14 7 1.4522 -0.1036 -2.4455 15 6 1.9823 -0.7258 -3.6781 16 6 2.0681 0.3833 -4.7431 17 6 1.5862 1.6669 -4.0289 18 6 1.8100 1.3353 -2.5320 19 1 2.8530 1.4898 -2.2556 20 6 0.8856 2.1757 -1.6488 21 6 1.2987 3.6231 -1.7234 22 8 2.2976 3.9377 -2.3344 23 6 0.4896 4.6546 -1.0547 24 6 -0.6664 4.2963 -0.3538 25 6 -1.4162 5.2680 0.2747 26 6 -1.0334 6.5963 0.2038 27 6 0.1063 6.9594 -0.4923 28 6 0.8695 5.9989 -1.1217 29 1 -0.3633 0.3955 -0.9485 30 1 -0.3633 -1.0191 0.1317 31 1 -0.3633 0.6237 0.8167 32 1 1.6053 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 2.9236 -1.8418 4.7317 35 1 3.1261 -0.6426 -1.2962 36 1 1.7533 -1.7720 -1.2047 37 1 2.9740 -1.1369 -3.4896 38 1 1.3089 -1.5135 -4.0158 39 1 3.0968 0.5028 -5.0829 40 1 1.4167 0.1500 -5.5854 41 1 2.1890 2.5243 -4.3284 42 1 0.5303 1.8472 -4.2304 43 1 -0.1422 2.0728 -1.9970 44 1 0.9560 1.8305 -0.6173 45 1 -0.9689 3.2609 -0.3017 46 1 -2.3070 4.9926 0.8195 47 1 -1.6275 7.3534 0.6939 48 1 0.3986 7.9978 -0.5427 49 1 1.7588 6.2837 -1.6643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000683889843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:39 Heat of formation + Delta-G solvation = -8.944273 kcal Electronic energy + Delta-G solvation = -27090.915582 eV Core-core repulsion = 23596.752582 eV Total energy + Delta-G solvation = -3494.163000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.35883 -39.09385 -37.89963 -35.41747 -32.58906 -32.31228 -31.12244 -30.90652 -30.36940 -26.89716 -26.60261 -25.34760 -23.62187 -22.79701 -22.44242 -21.01984 -20.34757 -19.33715 -18.90253 -17.30898 -16.66906 -15.99291 -15.74371 -15.48299 -15.11977 -14.84696 -14.61162 -14.35599 -14.12824 -13.88842 -13.57793 -13.46549 -13.06862 -12.73272 -12.51715 -12.38731 -11.92252 -11.83119 -11.78062 -11.72879 -11.40804 -11.24191 -11.20631 -11.08145 -10.85528 -10.75364 -10.54511 -10.48620 -10.28600 -10.13319 -9.71164 -9.38488 -9.10417 -9.08742 -9.04265 -8.92712 -8.33403 -8.09928 -5.98521 -3.99883 0.64035 1.27918 2.47343 3.31674 3.38462 3.41049 3.75392 3.85729 4.43398 4.50649 4.69947 4.75806 4.82361 4.83322 4.95199 5.04522 5.22825 5.26193 5.31515 5.37574 5.41006 5.53771 5.57360 5.67282 5.72173 5.76678 5.81415 5.87556 5.89219 5.97891 6.07798 6.08634 6.15260 6.21160 6.24956 6.28202 6.32437 6.34991 6.40868 6.48088 6.67166 6.78083 6.96284 7.08944 7.15028 7.25452 7.42542 7.63293 7.67442 7.83348 8.00927 8.44022 9.06087 9.63628 11.12992 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.007919 B = 0.005521 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.107319 B = 5070.442297 C = 7982.159499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 H 0.063 0.937 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.050 3.950 14 N -0.511 5.511 15 C 0.036 3.964 16 C -0.129 4.129 17 C -0.118 4.118 18 C 0.080 3.920 19 H 0.059 0.941 20 C -0.184 4.184 21 C 0.398 3.602 22 O -0.458 6.458 23 C -0.165 4.165 24 C -0.067 4.067 25 C -0.133 4.133 26 C -0.093 4.093 27 C -0.137 4.137 28 C -0.065 4.065 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.017 0.983 33 H 0.012 0.988 34 H 0.259 0.741 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.144 0.856 45 H 0.137 0.863 46 H 0.129 0.871 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 11.354 -13.931 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 H 0.081 0.919 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.077 4.077 14 N -0.235 5.235 15 C -0.092 4.092 16 C -0.168 4.168 17 C -0.156 4.156 18 C -0.028 4.028 19 H 0.077 0.923 20 C -0.220 4.220 21 C 0.277 3.723 22 O -0.334 6.334 23 C -0.166 4.166 24 C -0.085 4.085 25 C -0.151 4.151 26 C -0.111 4.111 27 C -0.155 4.155 28 C -0.083 4.083 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.161 0.839 45 H 0.155 0.845 46 H 0.147 0.853 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.827 11.296 -14.087 19.304 hybrid contribution 0.660 0.452 1.113 1.370 sum -6.167 11.748 -12.975 18.558 Atomic orbital electron populations 1.21849 0.95556 1.01594 1.00117 1.21527 0.96157 0.98994 0.94410 0.91879 1.19135 0.95995 0.95596 0.90280 1.21191 1.34682 1.08228 0.90951 0.92664 1.25001 0.95292 0.95067 0.99042 1.69959 1.38963 1.21236 1.23364 0.86673 0.78255 0.80473 0.83099 1.20686 1.21323 1.19898 1.22475 0.96056 0.99295 0.89906 1.64728 1.55228 1.01711 1.01809 1.22803 0.98571 0.97223 0.90602 1.22375 1.01106 0.95187 0.98094 1.22540 1.01454 0.97381 0.94274 1.22395 0.97476 0.88538 0.94375 0.92289 1.22910 1.01529 0.91610 1.05963 1.22640 0.83075 0.90899 0.75726 1.90470 1.23943 1.84612 1.34406 1.20603 0.98106 0.94864 1.03054 1.21603 0.92851 1.00408 0.93675 1.21190 1.00619 0.92962 1.00280 1.21410 0.96165 0.96451 0.97069 1.21121 0.95817 0.99565 0.99010 1.21422 0.98682 0.91857 0.96362 0.92749 0.93596 0.93019 0.96432 0.96945 0.93092 0.95246 0.90892 0.93976 0.90603 0.91868 0.91381 0.90745 0.91299 0.87919 0.83873 0.84533 0.85306 0.85784 0.85667 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.46 37.16 0.28 -2.10 16 2 C -0.09 -1.81 1.76 -90.62 -0.16 -1.97 16 3 H 0.06 1.26 5.26 -51.93 -0.27 0.99 16 4 C 0.03 0.69 4.44 -27.89 -0.12 0.56 16 5 C -0.51 -13.98 8.50 -34.44 -0.29 -14.27 16 6 H 0.06 1.45 7.07 -52.48 -0.37 1.08 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.05 0.88 4.32 -3.82 -0.02 0.86 16 14 N -0.51 -7.62 4.20 -222.63 -0.93 -8.55 16 15 C 0.04 0.47 6.70 -2.76 -0.02 0.45 16 16 C -0.13 -1.47 6.93 -25.37 -0.18 -1.65 16 17 C -0.12 -1.50 5.88 -24.87 -0.15 -1.64 16 18 C 0.08 1.18 1.60 -65.79 -0.11 1.07 16 19 H 0.06 0.99 7.79 -51.93 -0.40 0.59 16 20 C -0.18 -2.56 2.29 -27.88 -0.06 -2.62 16 21 C 0.40 5.75 6.86 -30.69 -0.21 5.53 16 22 O -0.46 -7.51 14.82 5.58 0.08 -7.43 16 23 C -0.17 -2.17 5.87 -105.07 -0.62 -2.79 16 24 C -0.07 -0.79 9.46 -39.10 -0.37 -1.16 16 25 C -0.13 -1.37 10.03 -39.65 -0.40 -1.77 16 26 C -0.09 -0.89 10.04 -39.46 -0.40 -1.29 16 27 C -0.14 -1.39 10.03 -39.65 -0.40 -1.79 16 28 C -0.07 -0.79 9.60 -39.11 -0.38 -1.16 16 29 H 0.05 0.83 5.10 -51.93 -0.26 0.57 16 30 H 0.04 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.05 0.94 7.18 -51.93 -0.37 0.57 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.03 0.53 7.99 -51.93 -0.41 0.12 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.04 0.55 7.68 -51.93 -0.40 0.15 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.98 7.35 -51.93 -0.38 0.60 16 42 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 43 H 0.10 1.26 7.15 -51.93 -0.37 0.88 16 44 H 0.14 2.25 3.08 -51.93 -0.16 2.09 16 45 H 0.14 1.47 6.95 -52.49 -0.36 1.10 16 46 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.13 1.54 7.65 -52.49 -0.40 1.13 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -30.76 378.09 -11.08 -41.84 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.96 Total: 2.22 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -3.69 Total: -24.22 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.20 Total: -34.54 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.08 Total: -7.43 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.76 -11.08 -41.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000683889843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.896 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds