Wall clock time and date at job start Tue Mar 31 2020 11:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47428 * 2 1 4 4 C 1.52995 * 109.47063 * 120.00105 * 2 1 3 5 5 C 1.50694 * 109.47199 * 295.00132 * 4 2 1 6 6 H 1.08004 * 120.00184 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00005 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00147 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99992 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47217 * 89.99601 * 9 7 5 11 11 H 1.48495 * 109.47395 * 210.00082 * 9 7 5 12 12 H 1.48507 * 109.47035 * 330.00228 * 9 7 5 13 13 C 1.53005 * 109.46930 * 240.00114 * 2 1 3 14 14 N 1.46900 * 109.47161 * 54.88872 * 13 2 1 15 15 C 1.47898 * 110.99978 * 176.77854 * 14 13 2 16 16 C 1.53994 * 107.05876 * 214.16153 * 15 14 13 17 17 C 1.54596 * 105.13918 * 1.21896 * 16 15 14 18 18 C 1.48533 * 110.99700 * 59.38282 * 14 13 2 19 19 H 1.09000 * 110.67168 * 41.28599 * 18 14 13 20 20 C 1.52997 * 110.66882 * 278.15331 * 18 14 13 21 21 C 1.50705 * 109.47496 * 178.26344 * 20 18 14 22 22 O 1.21252 * 119.99473 * 354.54439 * 21 20 18 23 23 C 1.47159 * 119.99981 * 174.54254 * 21 20 18 24 24 C 1.39855 * 120.17497 * 359.72697 * 23 21 20 25 25 C 1.37890 * 119.82463 * 179.73719 * 24 23 21 26 26 C 1.38408 * 120.16908 * 0.53543 * 25 24 23 27 27 C 1.38399 * 120.35159 * 359.72180 * 26 25 24 28 28 C 1.37884 * 120.17245 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47124 * 67.36598 * 1 2 3 30 30 H 1.08993 * 109.47287 * 187.36627 * 1 2 3 31 31 H 1.08999 * 109.47041 * 307.36951 * 1 2 3 32 32 H 1.09004 * 109.47139 * 54.99563 * 4 2 1 33 33 H 1.08999 * 109.47385 * 174.99721 * 4 2 1 34 34 H 0.96997 * 120.00029 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46739 * 174.88928 * 13 2 1 36 36 H 1.09002 * 109.46729 * 294.88790 * 13 2 1 37 37 H 1.08997 * 109.91533 * 333.51043 * 15 14 13 38 38 H 1.08995 * 109.92185 * 94.80428 * 15 14 13 39 39 H 1.08996 * 110.31438 * 120.13956 * 16 15 14 40 40 H 1.09005 * 110.30170 * 242.20974 * 16 15 14 41 41 H 1.09005 * 110.72180 * 140.31932 * 17 16 15 42 42 H 1.08998 * 110.72702 * 263.60350 * 17 16 15 43 43 H 1.09005 * 109.47477 * 298.26490 * 20 18 14 44 44 H 1.08998 * 109.47075 * 58.26054 * 20 18 14 45 45 H 1.07994 * 120.08512 * 359.97438 * 24 23 21 46 46 H 1.07994 * 119.91524 * 180.23351 * 25 24 23 47 47 H 1.08000 * 119.82472 * 179.69178 * 26 25 24 48 48 H 1.07996 * 119.91508 * 180.02562 * 27 26 25 49 49 H 1.08002 * 120.09112 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0806 0.9745 2.3757 7 6 1.9932 -0.4018 3.7283 8 7 2.6764 -1.5188 3.8511 9 14 1.4996 0.5632 5.2496 10 1 0.1725 0.0952 5.7237 11 1 2.5093 0.3534 6.3181 12 1 1.4246 2.0085 4.9163 13 6 2.0400 -0.7213 -1.2493 14 7 1.4522 -0.1036 -2.4455 15 6 1.9823 -0.7258 -3.6781 16 6 2.0681 0.3833 -4.7431 17 6 1.5862 1.6669 -4.0289 18 6 1.8100 1.3353 -2.5320 19 1 2.8530 1.4898 -2.2556 20 6 0.8856 2.1757 -1.6488 21 6 1.2987 3.6231 -1.7234 22 8 2.2976 3.9377 -2.3344 23 6 0.4896 4.6546 -1.0547 24 6 -0.6664 4.2963 -0.3538 25 6 -1.4162 5.2680 0.2747 26 6 -1.0334 6.5963 0.2038 27 6 0.1063 6.9594 -0.4923 28 6 0.8695 5.9989 -1.1217 29 1 -0.3633 0.3955 -0.9485 30 1 -0.3633 -1.0191 0.1317 31 1 -0.3633 0.6237 0.8167 32 1 1.6053 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 2.9236 -1.8418 4.7317 35 1 3.1261 -0.6426 -1.2962 36 1 1.7533 -1.7720 -1.2047 37 1 2.9740 -1.1369 -3.4896 38 1 1.3089 -1.5135 -4.0158 39 1 3.0968 0.5028 -5.0829 40 1 1.4167 0.1500 -5.5854 41 1 2.1890 2.5243 -4.3284 42 1 0.5303 1.8472 -4.2304 43 1 -0.1422 2.0728 -1.9970 44 1 0.9560 1.8305 -0.6173 45 1 -0.9689 3.2609 -0.3017 46 1 -2.3070 4.9926 0.8195 47 1 -1.6275 7.3534 0.6939 48 1 0.3986 7.9978 -0.5427 49 1 1.7588 6.2837 -1.6643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000683889843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:35 Heat of formation + Delta-G solvation = -24.460562 kcal Electronic energy + Delta-G solvation = -27091.588419 eV Core-core repulsion = 23596.752582 eV Total energy + Delta-G solvation = -3494.835837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -41.46920 -40.15038 -38.93530 -36.99986 -34.52556 -33.43537 -32.09753 -31.85861 -31.62777 -28.73929 -27.73745 -26.77602 -24.80777 -24.39106 -23.34591 -22.12874 -21.49344 -20.45069 -20.39361 -18.58225 -18.23827 -17.32473 -16.85680 -16.66761 -16.36057 -16.22946 -15.92445 -15.56690 -15.24836 -14.90627 -14.66946 -14.55802 -14.36826 -14.32652 -13.98149 -13.48047 -13.37887 -13.16143 -13.06204 -12.96514 -12.71229 -12.61348 -12.53298 -12.49594 -12.18135 -12.09808 -11.95915 -11.92065 -11.71130 -11.43595 -11.33576 -10.90443 -10.88611 -10.55823 -10.46843 -9.91803 -9.90342 -9.37206 -8.15991 -6.24825 -0.28351 0.45893 1.40512 1.41606 1.47316 1.51909 2.42489 2.74321 2.89461 3.18075 3.34219 3.66619 3.72390 3.91203 4.00237 4.06465 4.12203 4.21189 4.22421 4.26932 4.31357 4.41329 4.51549 4.51723 4.52594 4.64217 4.72369 4.77574 4.80518 4.89291 4.93650 4.98403 5.02306 5.05849 5.10428 5.17527 5.21074 5.32341 5.35876 5.41186 5.49229 5.50030 5.52865 5.54664 5.56182 5.81765 5.88576 5.99145 6.01509 6.07620 6.31500 6.54267 6.91050 7.43487 8.96315 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.007919 B = 0.005521 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.107319 B = 5070.442297 C = 7982.159499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.061 0.939 4 C 0.033 3.967 5 C -0.523 4.523 6 H 0.065 0.935 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.060 3.940 14 N -0.505 5.505 15 C 0.031 3.969 16 C -0.122 4.122 17 C -0.112 4.112 18 C 0.077 3.923 19 H 0.030 0.970 20 C -0.177 4.177 21 C 0.400 3.600 22 O -0.488 6.488 23 C -0.190 4.190 24 C -0.077 4.077 25 C -0.138 4.138 26 C -0.087 4.087 27 C -0.138 4.138 28 C -0.081 4.081 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.046 0.954 32 H -0.008 1.008 33 H -0.022 1.022 34 H 0.261 0.739 35 H 0.014 0.986 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.143 0.857 46 H 0.152 0.848 47 H 0.156 0.844 48 H 0.150 0.850 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 13.270 -14.285 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.005 4.005 5 C -0.561 4.561 6 H 0.083 0.917 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.187 1.187 13 C -0.068 4.068 14 N -0.229 5.229 15 C -0.097 4.097 16 C -0.160 4.160 17 C -0.150 4.150 18 C -0.031 4.031 19 H 0.048 0.952 20 C -0.214 4.214 21 C 0.280 3.720 22 O -0.366 6.366 23 C -0.191 4.191 24 C -0.095 4.095 25 C -0.156 4.156 26 C -0.105 4.105 27 C -0.156 4.156 28 C -0.100 4.100 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.010 0.990 33 H -0.003 1.003 34 H 0.069 0.931 35 H 0.033 0.967 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.161 0.839 46 H 0.170 0.830 47 H 0.174 0.826 48 H 0.168 0.832 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.277 13.218 -14.456 21.674 hybrid contribution 1.430 -0.116 1.216 1.881 sum -7.847 13.102 -13.240 20.212 Atomic orbital electron populations 1.21747 0.93625 1.01010 1.01510 1.21340 0.97595 0.98198 0.92873 0.92132 1.19028 0.93742 0.94871 0.92841 1.21602 1.34243 1.08511 0.91760 0.91707 1.25929 0.95295 0.96051 1.02611 1.70105 1.40396 1.23084 1.24156 0.85566 0.78088 0.79395 0.78778 1.19538 1.21361 1.18677 1.22241 0.95191 0.99000 0.90416 1.64737 1.54699 1.01897 1.01576 1.22938 0.98625 0.98124 0.89989 1.22368 1.01997 0.93608 0.98062 1.22489 1.02180 0.97769 0.92589 1.22412 0.96098 0.88441 0.96185 0.95205 1.22815 1.02501 0.91362 1.04698 1.22844 0.82655 0.91411 0.75079 1.90454 1.25168 1.85015 1.35990 1.20589 0.99024 0.94921 1.04544 1.21771 0.92632 1.01300 0.93786 1.21545 1.01081 0.93080 0.99861 1.21834 0.95775 0.96953 0.95945 1.21445 0.95615 1.00367 0.98172 1.21549 0.99135 0.92127 0.97149 0.89866 0.94620 0.93448 0.98961 1.00341 0.93066 0.96728 0.91192 0.94546 0.89057 0.91456 0.88990 0.91454 0.89989 0.85752 0.85564 0.83938 0.83034 0.82630 0.83202 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 7.46 71.98 0.54 -3.72 16 2 C -0.08 -3.28 1.76 -10.79 -0.02 -3.30 16 3 H 0.06 2.49 5.26 -2.39 -0.01 2.48 16 4 C 0.03 1.72 4.44 29.84 0.13 1.85 16 5 C -0.52 -29.06 8.50 25.60 0.22 -28.84 16 6 H 0.06 3.40 7.07 -2.91 -0.02 3.38 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -57.39 13.29 21.45 0.28 -57.11 16 9 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 13 C 0.06 2.14 4.32 86.30 0.37 2.51 16 14 N -0.51 -14.76 4.20 -858.27 -3.60 -18.36 16 15 C 0.03 0.76 6.70 86.45 0.58 1.34 16 16 C -0.12 -2.54 6.93 31.47 0.22 -2.32 16 17 C -0.11 -2.69 5.88 31.80 0.19 -2.50 16 18 C 0.08 2.24 1.60 45.26 0.07 2.32 16 19 H 0.03 1.05 7.79 -2.39 -0.02 1.03 16 20 C -0.18 -4.86 2.29 29.85 0.07 -4.79 16 21 C 0.40 11.62 6.86 28.03 0.19 11.82 16 22 O -0.49 -16.50 14.82 -2.94 -0.04 -16.54 16 23 C -0.19 -4.89 5.87 -20.15 -0.12 -5.01 16 24 C -0.08 -1.69 9.46 22.58 0.21 -1.47 16 25 C -0.14 -2.46 10.03 22.23 0.22 -2.24 16 26 C -0.09 -1.38 10.04 22.35 0.22 -1.16 16 27 C -0.14 -2.48 10.03 22.22 0.22 -2.26 16 28 C -0.08 -1.92 9.60 22.58 0.22 -1.71 16 29 H 0.08 2.41 5.10 -2.39 -0.01 2.39 16 30 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 31 H 0.05 1.68 7.18 -2.39 -0.02 1.66 16 32 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 33 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.01 0.55 7.99 -2.39 -0.02 0.53 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 37 H 0.04 0.94 7.68 -2.39 -0.02 0.92 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.07 1.73 7.35 -2.38 -0.02 1.72 16 42 H 0.08 1.76 8.00 -2.39 -0.02 1.74 16 43 H 0.12 2.81 7.15 -2.38 -0.02 2.79 16 44 H 0.13 3.95 3.08 -2.39 -0.01 3.94 16 45 H 0.14 2.82 6.95 -2.91 -0.02 2.80 16 46 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 48 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 49 H 0.12 2.98 7.65 -2.91 -0.02 2.96 16 Total: -1.00 -68.43 378.09 3.59 -64.84 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.92 Total: 20.19 kcal Atomic # 6 Polarization: -43.14 SS G_CDS: 4.00 Total: -39.13 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -3.32 Total: -75.47 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.04 Total: -16.54 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -68.43 3.59 -64.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000683889843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.384 kcal (2) G-P(sol) polarization free energy of solvation -68.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds