Wall clock time and date at job start Tue Mar 31 2020 11:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47036 * 2 1 4 4 C 1.50694 * 109.47691 * 239.99763 * 2 1 3 5 5 H 1.08003 * 119.99607 * 275.00790 * 4 2 1 6 6 C 1.37878 * 120.00367 * 94.99831 * 4 2 1 7 7 N 1.31511 * 120.00066 * 184.91768 * 6 4 2 8 8 Si 1.86806 * 119.99396 * 4.92258 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.83522 * 8 6 4 10 10 H 1.48500 * 109.46620 * 204.83230 * 8 6 4 11 11 H 1.48490 * 109.47261 * 324.82948 * 8 6 4 12 12 N 1.46504 * 109.46852 * 119.99281 * 2 1 3 13 13 C 1.46503 * 119.99727 * 60.00582 * 12 2 1 14 14 C 1.34777 * 120.00329 * 240.00141 * 12 2 1 15 15 O 1.21695 * 119.99702 * 0.02562 * 14 12 2 16 16 C 1.46422 * 120.00074 * 180.02562 * 14 12 2 17 17 C 1.34812 * 120.00190 * 180.02562 * 16 14 12 18 18 C 1.47201 * 120.00239 * 180.02562 * 17 16 14 19 19 C 1.39834 * 120.16992 * 359.72200 * 18 17 16 20 20 C 1.37895 * 119.82295 * 179.72556 * 19 18 17 21 21 C 1.38399 * 120.17370 * 0.57421 * 20 19 18 22 22 C 1.50705 * 119.82773 * 179.71974 * 21 20 19 23 23 C 1.53006 * 109.46947 * 239.97705 * 22 21 20 24 24 C 1.52999 * 109.47134 * 359.97438 * 22 21 20 25 25 C 1.52997 * 109.46997 * 119.98051 * 22 21 20 26 26 C 1.38404 * 120.34340 * 359.69972 * 21 20 19 27 27 C 1.37886 * 120.17012 * 359.97438 * 26 21 20 28 28 H 1.08999 * 109.46969 * 174.98050 * 1 2 3 29 29 H 1.08995 * 109.47507 * 294.97883 * 1 2 3 30 30 H 1.09001 * 109.46887 * 54.98598 * 1 2 3 31 31 H 0.97005 * 119.99481 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47037 * 269.99258 * 13 12 2 33 33 H 1.09008 * 109.46850 * 149.99390 * 13 12 2 34 34 H 1.09003 * 109.47196 * 30.00126 * 13 12 2 35 35 H 1.08004 * 120.00410 * 0.02562 * 16 14 12 36 36 H 1.08004 * 119.99400 * 359.97438 * 17 16 14 37 37 H 1.07994 * 120.08857 * 359.97438 * 19 18 17 38 38 H 1.08000 * 119.91202 * 180.28956 * 20 19 18 39 39 H 1.08996 * 109.46951 * 60.00214 * 23 22 21 40 40 H 1.08995 * 109.46562 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.46610 * 300.00281 * 23 22 21 42 42 H 1.08998 * 109.47274 * 59.99896 * 24 22 21 43 43 H 1.08997 * 109.46700 * 180.02562 * 24 22 21 44 44 H 1.08996 * 109.47254 * 300.00086 * 24 22 21 45 45 H 1.09001 * 109.47494 * 59.99146 * 25 22 21 46 46 H 1.08995 * 109.47465 * 180.02562 * 25 22 21 47 47 H 1.09005 * 109.47213 * 299.99932 * 25 22 21 48 48 H 1.07998 * 119.91337 * 180.02562 * 26 21 20 49 49 H 1.07999 * 120.08714 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.1355 -1.7855 -1.2288 6 6 2.3605 0.0120 -2.3580 7 7 2.7062 -0.6133 -3.4620 8 14 2.3137 1.8790 -2.3173 9 1 3.5994 2.3948 -1.7821 10 1 2.1060 2.3989 -3.6927 11 1 1.1988 2.3274 -1.4450 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0835 15 8 3.0867 1.1298 1.8910 16 6 3.2816 -0.7258 3.2788 17 6 4.0562 -0.0704 4.1665 18 6 4.5477 -0.7646 5.3679 19 6 4.2085 -2.1020 5.5949 20 6 4.6776 -2.7470 6.7199 21 6 5.4722 -2.0707 7.6290 22 6 5.9754 -2.7813 8.8591 23 6 5.4649 -2.0611 10.1088 24 6 5.4665 -4.2242 8.8584 25 6 7.5053 -2.7799 8.8589 26 6 5.8075 -0.7451 7.4142 27 6 5.3518 -0.0884 6.2907 28 1 -0.3633 -1.0237 -0.0899 29 1 -0.3634 0.4339 0.9315 30 1 -0.3633 0.5897 -0.8417 31 1 2.9366 -0.1050 -4.2555 32 1 0.7376 -2.1443 1.9995 33 1 2.4630 -2.5817 1.9866 34 1 1.5296 -2.5969 0.4710 35 1 3.0213 -1.7600 3.4494 36 1 4.3167 0.9637 3.9957 37 1 3.5842 -2.6296 4.8891 38 1 4.4204 -3.7814 6.8943 39 1 4.3749 -2.0621 10.1090 40 1 5.8292 -2.5749 10.9984 41 1 5.8273 -1.0332 10.1092 42 1 5.8301 -4.7373 7.9681 43 1 5.8301 -4.7380 9.7483 44 1 4.3766 -4.2252 8.8586 45 1 7.8678 -1.7520 8.8592 46 1 7.8693 -3.2943 9.7482 47 1 7.8690 -3.2930 7.9685 48 1 6.4284 -0.2242 8.1280 49 1 5.6146 0.9458 6.1243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728873894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:08 Heat of formation + Delta-G solvation = -7.392865 kcal Electronic energy + Delta-G solvation = -25549.402253 eV Core-core repulsion = 22055.306528 eV Total energy + Delta-G solvation = -3494.095726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.11842 -39.12733 -36.95364 -35.44526 -33.37936 -32.58201 -31.35268 -30.50306 -28.80414 -27.71252 -27.59358 -26.19789 -25.27464 -24.37818 -22.55875 -21.89968 -19.93682 -19.30718 -18.01495 -17.52870 -16.91302 -16.08787 -15.74905 -15.09762 -15.02001 -14.62004 -14.53403 -14.32452 -14.03233 -13.88667 -13.54950 -13.14222 -13.10469 -12.60714 -12.57840 -12.48128 -12.34892 -12.30113 -12.23830 -12.03641 -11.92112 -11.71185 -11.40399 -11.34147 -11.22250 -11.04410 -10.90215 -10.71463 -10.68652 -10.44245 -10.08019 -9.77213 -9.29709 -9.08920 -9.06606 -8.59775 -8.16879 -7.61570 -6.16302 -4.18434 0.60346 1.28386 2.12243 3.32770 3.39811 3.47286 3.63744 3.87103 4.02791 4.26003 4.39512 4.39780 4.65112 4.74480 4.77922 4.82882 4.94056 5.17286 5.20709 5.22841 5.26605 5.27983 5.35668 5.40835 5.45905 5.52409 5.54841 5.62421 5.71268 5.73781 5.84991 5.89150 5.91453 5.95058 5.97918 6.14542 6.23037 6.28598 6.36099 6.41099 6.44187 6.51023 6.61612 6.69170 6.83346 6.94482 7.11295 7.49633 7.65023 8.16268 8.50964 8.84588 8.96346 9.46428 10.95525 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026887 B = 0.002366 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.161820 B =11833.062094 C =12113.522946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.221 3.779 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.875 3.125 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.582 5.582 13 C 0.081 3.919 14 C 0.532 3.468 15 O -0.561 6.561 16 C -0.188 4.188 17 C -0.049 4.049 18 C -0.064 4.064 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.069 4.069 22 C -0.031 4.031 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.118 4.118 27 C -0.098 4.098 28 H 0.049 0.951 29 H 0.026 0.974 30 H 0.055 0.945 31 H 0.266 0.734 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.121 0.879 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 -6.255 26.465 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.121 3.879 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.702 3.298 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.312 5.312 13 C -0.062 4.062 14 C 0.322 3.678 15 O -0.443 6.443 16 C -0.208 4.208 17 C -0.069 4.069 18 C -0.065 4.065 19 C -0.121 4.121 20 C -0.140 4.140 21 C -0.069 4.069 22 C -0.031 4.031 23 C -0.196 4.196 24 C -0.202 4.202 25 C -0.196 4.196 26 C -0.136 4.136 27 C -0.116 4.116 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.139 0.861 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.188 -5.650 26.111 27.215 hybrid contribution 0.002 0.779 -0.244 0.816 sum 5.190 -4.871 25.868 26.829 Atomic orbital electron populations 1.22207 0.98267 1.00882 0.99109 1.19330 0.90838 0.95006 0.82771 0.91747 1.21115 1.44718 0.95669 0.94796 0.90360 1.24959 0.93733 0.98558 0.95212 1.69891 1.45219 1.36076 1.01689 0.86884 0.79952 0.86053 0.76906 1.19601 1.21388 1.18819 1.48226 1.48583 1.11661 1.22745 1.21679 0.98878 0.83124 1.02553 1.18281 0.79513 0.86577 0.83452 1.90738 1.59063 1.17097 1.77376 1.23276 1.01079 1.00693 0.95768 1.22298 0.93702 0.99791 0.91109 1.19095 0.98544 0.93893 0.94921 1.21445 0.99296 0.93959 0.97420 1.21103 0.98393 1.00217 0.94276 1.19911 0.97335 0.93999 0.95672 1.19522 0.95736 0.95090 0.92739 1.21892 1.01314 1.00221 0.96127 1.21972 1.01281 0.94941 1.02008 1.21895 0.93646 1.02121 1.01934 1.20868 1.00710 0.94313 0.97691 1.21344 0.96786 0.99858 0.93657 0.93156 0.95503 0.92611 0.92387 0.93773 0.92384 0.89928 0.85482 0.84862 0.85521 0.85462 0.92430 0.92377 0.92407 0.92133 0.92396 0.92180 0.92395 0.92375 0.92387 0.86091 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.10 37.16 0.34 -2.79 16 2 C 0.22 5.44 2.30 -69.08 -0.16 5.28 16 3 H 0.06 1.74 4.05 -51.93 -0.21 1.53 16 4 C -0.52 -14.57 8.72 -34.44 -0.30 -14.87 16 5 H 0.08 2.28 6.82 -52.48 -0.36 1.92 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 8 Si 0.88 22.50 26.99 -169.99 -4.59 17.91 16 9 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.26 -6.55 6.82 56.52 0.39 -6.17 16 12 N -0.58 -12.45 2.75 -176.90 -0.49 -12.94 16 13 C 0.08 1.35 9.30 59.85 0.56 1.91 16 14 C 0.53 11.29 7.61 -12.97 -0.10 11.19 16 15 O -0.56 -13.98 15.56 5.19 0.08 -13.90 16 16 C -0.19 -3.00 8.61 -37.50 -0.32 -3.33 16 17 C -0.05 -0.72 9.46 -37.16 -0.35 -1.07 16 18 C -0.06 -0.79 5.87 -105.06 -0.62 -1.41 16 19 C -0.10 -1.14 9.41 -39.11 -0.37 -1.51 16 20 C -0.12 -1.17 8.95 -39.65 -0.36 -1.53 16 21 C -0.07 -0.63 4.77 -104.50 -0.50 -1.13 16 22 C -0.03 -0.22 0.85 -155.66 -0.13 -0.35 16 23 C -0.14 -0.87 8.29 37.16 0.31 -0.57 16 24 C -0.14 -0.90 7.13 37.16 0.26 -0.63 16 25 C -0.14 -0.90 8.29 37.16 0.31 -0.59 16 26 C -0.12 -1.11 8.68 -39.65 -0.34 -1.45 16 27 C -0.10 -1.07 9.80 -39.11 -0.38 -1.45 16 28 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.80 6.09 -51.92 -0.32 0.49 16 34 H 0.08 1.48 6.56 -51.93 -0.34 1.14 16 35 H 0.13 1.66 4.22 -52.48 -0.22 1.44 16 36 H 0.13 2.06 7.52 -52.48 -0.39 1.66 16 37 H 0.13 1.25 6.17 -52.49 -0.32 0.93 16 38 H 0.13 0.99 5.87 -52.49 -0.31 0.68 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.36 7.37 -51.93 -0.38 -0.03 16 42 H 0.06 0.38 7.50 -51.93 -0.39 -0.01 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.37 7.50 -51.93 -0.39 -0.02 16 45 H 0.06 0.37 7.37 -51.93 -0.38 -0.02 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.12 0.91 7.07 -52.49 -0.37 0.54 16 49 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -33.13 386.36 -8.40 -41.53 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.75 Total: -0.13 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.25 Total: -12.10 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.29 Total: -39.14 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.08 Total: -13.90 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.59 Total: 17.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.13 -8.40 -41.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728873894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.140 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds