Wall clock time and date at job start Tue Mar 31 2020 11:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47036 * 2 1 4 4 C 1.50694 * 109.47691 * 239.99763 * 2 1 3 5 5 H 1.08003 * 119.99607 * 275.00790 * 4 2 1 6 6 C 1.37878 * 120.00367 * 94.99831 * 4 2 1 7 7 N 1.31511 * 120.00066 * 184.91768 * 6 4 2 8 8 Si 1.86806 * 119.99396 * 4.92258 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.83522 * 8 6 4 10 10 H 1.48500 * 109.46620 * 204.83230 * 8 6 4 11 11 H 1.48490 * 109.47261 * 324.82948 * 8 6 4 12 12 N 1.46504 * 109.46852 * 119.99281 * 2 1 3 13 13 C 1.46503 * 119.99727 * 60.00582 * 12 2 1 14 14 C 1.34777 * 120.00329 * 240.00141 * 12 2 1 15 15 O 1.21695 * 119.99702 * 0.02562 * 14 12 2 16 16 C 1.46422 * 120.00074 * 180.02562 * 14 12 2 17 17 C 1.34812 * 120.00190 * 180.02562 * 16 14 12 18 18 C 1.47201 * 120.00239 * 180.02562 * 17 16 14 19 19 C 1.39834 * 120.16992 * 359.72200 * 18 17 16 20 20 C 1.37895 * 119.82295 * 179.72556 * 19 18 17 21 21 C 1.38399 * 120.17370 * 0.57421 * 20 19 18 22 22 C 1.50705 * 119.82773 * 179.71974 * 21 20 19 23 23 C 1.53006 * 109.46947 * 239.97705 * 22 21 20 24 24 C 1.52999 * 109.47134 * 359.97438 * 22 21 20 25 25 C 1.52997 * 109.46997 * 119.98051 * 22 21 20 26 26 C 1.38404 * 120.34340 * 359.69972 * 21 20 19 27 27 C 1.37886 * 120.17012 * 359.97438 * 26 21 20 28 28 H 1.08999 * 109.46969 * 174.98050 * 1 2 3 29 29 H 1.08995 * 109.47507 * 294.97883 * 1 2 3 30 30 H 1.09001 * 109.46887 * 54.98598 * 1 2 3 31 31 H 0.97005 * 119.99481 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47037 * 269.99258 * 13 12 2 33 33 H 1.09008 * 109.46850 * 149.99390 * 13 12 2 34 34 H 1.09003 * 109.47196 * 30.00126 * 13 12 2 35 35 H 1.08004 * 120.00410 * 0.02562 * 16 14 12 36 36 H 1.08004 * 119.99400 * 359.97438 * 17 16 14 37 37 H 1.07994 * 120.08857 * 359.97438 * 19 18 17 38 38 H 1.08000 * 119.91202 * 180.28956 * 20 19 18 39 39 H 1.08996 * 109.46951 * 60.00214 * 23 22 21 40 40 H 1.08995 * 109.46562 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.46610 * 300.00281 * 23 22 21 42 42 H 1.08998 * 109.47274 * 59.99896 * 24 22 21 43 43 H 1.08997 * 109.46700 * 180.02562 * 24 22 21 44 44 H 1.08996 * 109.47254 * 300.00086 * 24 22 21 45 45 H 1.09001 * 109.47494 * 59.99146 * 25 22 21 46 46 H 1.08995 * 109.47465 * 180.02562 * 25 22 21 47 47 H 1.09005 * 109.47213 * 299.99932 * 25 22 21 48 48 H 1.07998 * 119.91337 * 180.02562 * 26 21 20 49 49 H 1.07999 * 120.08714 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.1355 -1.7855 -1.2288 6 6 2.3605 0.0120 -2.3580 7 7 2.7062 -0.6133 -3.4620 8 14 2.3137 1.8790 -2.3173 9 1 3.5994 2.3948 -1.7821 10 1 2.1060 2.3989 -3.6927 11 1 1.1988 2.3274 -1.4450 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0835 15 8 3.0867 1.1298 1.8910 16 6 3.2816 -0.7258 3.2788 17 6 4.0562 -0.0704 4.1665 18 6 4.5477 -0.7646 5.3679 19 6 4.2085 -2.1020 5.5949 20 6 4.6776 -2.7470 6.7199 21 6 5.4722 -2.0707 7.6290 22 6 5.9754 -2.7813 8.8591 23 6 5.4649 -2.0611 10.1088 24 6 5.4665 -4.2242 8.8584 25 6 7.5053 -2.7799 8.8589 26 6 5.8075 -0.7451 7.4142 27 6 5.3518 -0.0884 6.2907 28 1 -0.3633 -1.0237 -0.0899 29 1 -0.3634 0.4339 0.9315 30 1 -0.3633 0.5897 -0.8417 31 1 2.9366 -0.1050 -4.2555 32 1 0.7376 -2.1443 1.9995 33 1 2.4630 -2.5817 1.9866 34 1 1.5296 -2.5969 0.4710 35 1 3.0213 -1.7600 3.4494 36 1 4.3167 0.9637 3.9957 37 1 3.5842 -2.6296 4.8891 38 1 4.4204 -3.7814 6.8943 39 1 4.3749 -2.0621 10.1090 40 1 5.8292 -2.5749 10.9984 41 1 5.8273 -1.0332 10.1092 42 1 5.8301 -4.7373 7.9681 43 1 5.8301 -4.7380 9.7483 44 1 4.3766 -4.2252 8.8586 45 1 7.8678 -1.7520 8.8592 46 1 7.8693 -3.2943 9.7482 47 1 7.8690 -3.2930 7.9685 48 1 6.4284 -0.2242 8.1280 49 1 5.6146 0.9458 6.1243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728873894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:04 Heat of formation + Delta-G solvation = -24.988168 kcal Electronic energy + Delta-G solvation = -25550.165243 eV Core-core repulsion = 22055.306528 eV Total energy + Delta-G solvation = -3494.858715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.00231 -40.59813 -37.73782 -37.14857 -34.82301 -34.28862 -32.25767 -32.10397 -29.81853 -28.21501 -28.06825 -27.66367 -27.29628 -25.51876 -23.44725 -23.07271 -21.30864 -20.11125 -19.45769 -19.29335 -18.37441 -17.32254 -17.15348 -16.40970 -16.03741 -15.84799 -15.69927 -15.19649 -15.12480 -14.87955 -14.59044 -14.44370 -14.20853 -14.18109 -13.99813 -13.77572 -13.56881 -13.15520 -13.08252 -13.03862 -13.03239 -12.78041 -12.67147 -12.62045 -12.51090 -12.32443 -12.12785 -11.88112 -11.81788 -11.54347 -11.32592 -11.30461 -11.09626 -10.81593 -10.75431 -9.86590 -9.42349 -9.02061 -8.39109 -6.42606 -0.41195 0.50941 1.04711 1.24999 1.31431 1.40013 2.25389 2.28812 2.41232 2.95048 3.02999 3.56691 3.70152 3.75506 3.99576 4.05135 4.14953 4.16531 4.25804 4.40620 4.45456 4.47077 4.51004 4.57878 4.66457 4.72728 4.81314 4.81800 4.82057 4.93932 4.96346 4.97451 5.04553 5.06284 5.07163 5.11150 5.13353 5.20942 5.23045 5.28950 5.39621 5.41663 5.46894 5.52395 5.58872 5.70265 5.73577 5.81084 6.05323 6.15909 6.62510 6.74847 7.21846 7.36005 8.76123 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026887 B = 0.002366 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.161820 B =11833.062094 C =12113.522946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.219 3.781 3 H 0.038 0.962 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.925 3.075 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.252 1.252 12 N -0.593 5.593 13 C 0.078 3.922 14 C 0.524 3.476 15 O -0.612 6.612 16 C -0.209 4.209 17 C -0.022 4.022 18 C -0.092 4.092 19 C -0.104 4.104 20 C -0.129 4.129 21 C -0.062 4.062 22 C -0.031 4.031 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.139 4.139 26 C -0.123 4.123 27 C -0.102 4.102 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.269 0.731 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.160 0.840 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.140 0.860 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -7.338 29.704 31.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.116 3.884 3 H 0.056 0.944 4 C -0.558 4.558 5 H 0.074 0.926 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.750 3.250 9 H -0.212 1.212 10 H -0.200 1.200 11 H -0.176 1.176 12 N -0.321 5.321 13 C -0.064 4.064 14 C 0.316 3.684 15 O -0.498 6.498 16 C -0.229 4.229 17 C -0.043 4.043 18 C -0.092 4.092 19 C -0.122 4.122 20 C -0.146 4.146 21 C -0.062 4.062 22 C -0.031 4.031 23 C -0.195 4.195 24 C -0.203 4.203 25 C -0.196 4.196 26 C -0.140 4.140 27 C -0.120 4.120 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.177 0.823 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.158 0.842 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.139 -6.766 29.369 30.574 hybrid contribution 0.122 1.030 -1.027 1.459 sum 5.262 -5.737 28.343 29.392 Atomic orbital electron populations 1.22057 0.95659 1.01943 0.99941 1.19142 0.92765 0.93506 0.82938 0.94386 1.21357 1.43563 0.94848 0.95998 0.92571 1.25612 0.94128 1.02141 0.95184 1.69983 1.47338 1.37483 1.02420 0.86088 0.79434 0.81933 0.77499 1.21241 1.19969 1.17593 1.48188 1.48723 1.13439 1.21782 1.21917 1.01561 0.80431 1.02525 1.19055 0.78574 0.86218 0.84566 1.90697 1.60885 1.19411 1.78783 1.23041 1.03419 1.02002 0.94398 1.22392 0.91546 0.99033 0.91282 1.19030 1.00656 0.94809 0.94751 1.21638 0.99088 0.93396 0.98041 1.21375 0.98235 1.01191 0.93823 1.20284 0.95961 0.93915 0.96033 1.19594 0.96086 0.95482 0.91981 1.21890 1.00991 1.00390 0.96210 1.21983 1.01377 0.94353 1.02559 1.21897 0.93131 1.02306 1.02239 1.21107 1.00747 0.94664 0.97528 1.21542 0.96305 1.00382 0.93800 0.91731 0.93511 0.93156 0.92215 0.90620 0.89392 0.91702 0.82322 0.86438 0.84437 0.83529 0.92935 0.91108 0.92311 0.92232 0.91296 0.92065 0.92311 0.91081 0.93120 0.84202 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 9.10 71.98 0.66 -5.08 16 2 C 0.22 10.81 2.30 44.24 0.10 10.91 16 3 H 0.04 2.09 4.05 -2.39 -0.01 2.08 16 4 C -0.52 -29.39 8.72 25.60 0.22 -29.17 16 5 H 0.06 3.37 6.82 -2.91 -0.02 3.35 16 6 C 0.03 1.71 5.47 84.66 0.46 2.17 16 7 N -0.93 -57.81 13.96 21.45 0.30 -57.51 16 8 Si 0.92 47.42 26.99 68.60 1.85 49.27 16 9 H -0.29 -15.25 7.11 99.48 0.71 -14.55 16 10 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.25 -12.30 6.82 99.48 0.68 -11.63 16 12 N -0.59 -25.12 2.75 -831.80 -2.29 -27.41 16 13 C 0.08 2.45 9.30 127.77 1.19 3.64 16 14 C 0.52 22.31 7.61 86.37 0.66 22.96 16 15 O -0.61 -31.40 15.56 -4.33 -0.07 -31.47 16 16 C -0.21 -6.48 8.61 23.62 0.20 -6.27 16 17 C -0.02 -0.65 9.46 23.84 0.23 -0.42 16 18 C -0.09 -2.14 5.87 -20.15 -0.12 -2.26 16 19 C -0.10 -2.04 9.41 22.57 0.21 -1.83 16 20 C -0.13 -2.11 8.95 22.23 0.20 -1.91 16 21 C -0.06 -0.96 4.77 -19.78 -0.09 -1.05 16 22 C -0.03 -0.35 0.85 -52.93 -0.05 -0.39 16 23 C -0.14 -1.33 8.29 71.98 0.60 -0.74 16 24 C -0.15 -1.36 7.13 71.98 0.51 -0.84 16 25 C -0.14 -1.41 8.29 71.98 0.60 -0.81 16 26 C -0.12 -2.03 8.68 22.23 0.19 -1.83 16 27 C -0.10 -2.06 9.80 22.57 0.22 -1.84 16 28 H 0.06 2.47 7.84 -2.39 -0.02 2.45 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 2.22 6.09 -2.38 -0.01 2.20 16 34 H 0.06 2.28 6.56 -2.39 -0.02 2.27 16 35 H 0.16 3.75 4.22 -2.91 -0.01 3.74 16 36 H 0.12 3.72 7.52 -2.91 -0.02 3.69 16 37 H 0.14 2.32 6.17 -2.91 -0.02 2.30 16 38 H 0.15 1.80 5.87 -2.91 -0.02 1.79 16 39 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.06 0.56 7.37 -2.39 -0.02 0.54 16 42 H 0.06 0.57 7.50 -2.39 -0.02 0.56 16 43 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.06 0.56 7.50 -2.39 -0.02 0.55 16 45 H 0.06 0.59 7.37 -2.39 -0.02 0.57 16 46 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.05 0.59 8.14 -2.38 -0.02 0.58 16 48 H 0.14 1.74 7.07 -2.91 -0.02 1.72 16 49 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -73.95 386.36 6.69 -67.26 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.90 Total: 14.65 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 5.99 Total: -14.79 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -1.99 Total: -84.92 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.07 Total: -31.47 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.85 Total: 49.27 kcal Total: -73.95 6.69 -67.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728873894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.276 kcal (2) G-P(sol) polarization free energy of solvation -73.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds