Wall clock time and date at job start Tue Mar 31 2020 11:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46712 * 2 1 4 4 C 1.50697 * 109.46980 * 239.99855 * 2 1 3 5 5 H 1.07997 * 120.00261 * 239.99595 * 4 2 1 6 6 C 1.37878 * 119.99888 * 60.00030 * 4 2 1 7 7 N 1.31518 * 120.00267 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00166 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46978 * 60.00299 * 8 6 4 10 10 H 1.48501 * 109.47150 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47292 * 300.00106 * 8 6 4 12 12 N 1.46497 * 109.46954 * 120.00139 * 2 1 3 13 13 C 1.46502 * 120.00313 * 60.00047 * 12 2 1 14 14 C 1.34776 * 119.99665 * 240.27470 * 12 2 1 15 15 O 1.21696 * 120.00420 * 359.72512 * 14 12 2 16 16 C 1.46433 * 120.00062 * 179.73021 * 14 12 2 17 17 C 1.34809 * 119.99985 * 173.23271 * 16 14 12 18 18 C 1.47203 * 120.00051 * 349.03042 * 17 16 14 19 19 C 1.39830 * 120.16844 * 316.10180 * 18 17 16 20 20 C 1.37901 * 119.82527 * 179.72218 * 19 18 17 21 21 C 1.38402 * 120.16747 * 0.58599 * 20 19 18 22 22 C 1.50704 * 119.82652 * 179.71885 * 21 20 19 23 23 C 1.52994 * 109.46769 * 239.97404 * 22 21 20 24 24 C 1.53000 * 109.46901 * 359.97164 * 22 21 20 25 25 C 1.52997 * 109.47189 * 119.97164 * 22 21 20 26 26 C 1.38400 * 120.34786 * 359.69151 * 21 20 19 27 27 C 1.37893 * 120.16717 * 359.97438 * 26 21 20 28 28 H 1.09002 * 109.46712 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47119 * 299.99905 * 1 2 3 30 30 H 1.09000 * 109.47446 * 60.00122 * 1 2 3 31 31 H 0.96993 * 120.00249 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46635 * 89.99868 * 13 12 2 33 33 H 1.08993 * 109.47031 * 209.99917 * 13 12 2 34 34 H 1.08997 * 109.46861 * 329.99650 * 13 12 2 35 35 H 1.08000 * 119.99818 * 353.22834 * 16 14 12 36 36 H 1.08004 * 119.99813 * 169.03175 * 17 16 14 37 37 H 1.08002 * 120.09403 * 0.02562 * 19 18 17 38 38 H 1.07997 * 119.91438 * 180.29952 * 20 19 18 39 39 H 1.09003 * 109.47637 * 59.99930 * 23 22 21 40 40 H 1.09007 * 109.47055 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.47509 * 299.99797 * 23 22 21 42 42 H 1.09003 * 109.47201 * 60.00236 * 24 22 21 43 43 H 1.08997 * 109.46848 * 180.02562 * 24 22 21 44 44 H 1.08995 * 109.47567 * 300.00295 * 24 22 21 45 45 H 1.09003 * 109.46865 * 60.00340 * 25 22 21 46 46 H 1.08997 * 109.46946 * 179.97438 * 25 22 21 47 47 H 1.08996 * 109.47473 * 300.00260 * 25 22 21 48 48 H 1.07998 * 119.91568 * 180.02562 * 26 21 20 49 49 H 1.08004 * 120.08345 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8267 -0.4199 -5.2204 11 1 3.8073 -1.1190 -4.0078 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7886 -0.0340 2.0861 15 8 3.0826 1.1311 1.8936 16 6 3.2718 -0.7225 3.2847 17 6 4.1511 -0.1122 4.1043 18 6 4.8095 1.1343 3.6804 19 6 5.3171 1.2548 2.3830 20 6 5.9274 2.4279 1.9916 21 6 6.0489 3.4797 2.8829 22 6 6.7229 4.7558 2.4489 23 6 7.9390 5.0185 3.3393 24 6 7.1755 4.6240 0.9933 25 6 5.7385 5.9204 2.5734 26 6 5.5542 3.3660 4.1704 27 6 4.9352 2.2019 4.5746 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.7081 1.1608 -3.4843 32 1 2.4158 -2.7377 0.9716 33 1 1.6238 -2.2852 2.5001 34 1 0.6904 -2.3002 0.9847 35 1 2.9237 -1.7193 3.5121 36 1 4.3725 -0.5378 5.0719 37 1 5.2271 0.4333 1.6878 38 1 6.3156 2.5243 0.9884 39 1 8.6404 4.1888 3.2506 40 1 8.4268 5.9413 3.0252 41 1 7.6166 5.1124 4.3763 42 1 6.3091 4.4368 0.3589 43 1 7.6634 5.5468 0.6796 44 1 7.8768 3.7944 0.9045 45 1 5.4161 6.0143 3.6104 46 1 6.2262 6.8434 2.2600 47 1 4.8721 5.7333 1.9391 48 1 5.6524 4.1913 4.8600 49 1 4.5493 2.1148 5.5796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728873895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:13 Heat of formation + Delta-G solvation = 7.568185 kcal Electronic energy + Delta-G solvation = -26850.257376 eV Core-core repulsion = 23356.810411 eV Total energy + Delta-G solvation = -3493.446966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.82043 -38.87105 -36.49338 -35.15669 -33.11019 -32.64087 -30.74126 -29.68674 -28.36863 -27.27797 -27.21161 -26.08492 -25.20157 -23.93464 -21.95295 -21.90857 -19.90804 -18.98804 -17.93979 -17.00490 -16.28049 -16.05195 -15.21267 -15.00590 -14.62233 -14.33925 -14.18683 -14.09474 -13.64114 -13.43804 -13.38182 -13.09823 -12.64179 -12.58633 -12.51392 -12.25012 -12.01490 -11.85659 -11.64208 -11.57454 -11.51334 -11.21041 -11.17942 -11.04072 -10.87392 -10.80690 -10.67145 -10.42668 -10.30114 -10.23294 -10.14726 -9.46200 -9.15515 -8.97337 -8.42354 -8.37480 -7.58563 -7.46072 -6.05511 -4.13594 1.11581 1.92572 2.26021 3.28038 3.33231 3.34920 4.03601 4.08014 4.23094 4.42183 4.71756 4.84098 5.02916 5.07640 5.16893 5.25282 5.34249 5.38360 5.43041 5.52497 5.59974 5.63990 5.76816 5.79536 5.82618 5.88208 5.91518 6.02146 6.04959 6.09805 6.10936 6.26431 6.33274 6.34276 6.36525 6.37216 6.49548 6.56021 6.79015 6.85421 6.87186 7.01040 7.06405 7.09962 7.42768 7.49678 7.57145 7.73979 8.04396 8.22296 8.59071 8.86214 9.14337 9.53110 10.99552 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.004015 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.204938 B = 6971.630169 C = 8353.265803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.587 5.587 13 C 0.086 3.914 14 C 0.523 3.477 15 O -0.537 6.537 16 C -0.201 4.201 17 C -0.046 4.046 18 C -0.068 4.068 19 C -0.024 4.024 20 C -0.131 4.131 21 C -0.063 4.063 22 C -0.029 4.029 23 C -0.135 4.135 24 C -0.145 4.145 25 C -0.138 4.138 26 C -0.135 4.135 27 C -0.103 4.103 28 H 0.029 0.971 29 H 0.010 0.990 30 H 0.093 0.907 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.112 0.888 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.424 2.141 13.523 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.317 5.317 13 C -0.058 4.058 14 C 0.312 3.688 15 O -0.417 6.417 16 C -0.222 4.222 17 C -0.065 4.065 18 C -0.069 4.069 19 C -0.042 4.042 20 C -0.149 4.149 21 C -0.063 4.063 22 C -0.029 4.029 23 C -0.193 4.193 24 C -0.202 4.202 25 C -0.195 4.195 26 C -0.153 4.153 27 C -0.122 4.122 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.130 0.870 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.448 2.864 13.217 16.497 hybrid contribution -0.034 -0.784 -0.925 1.213 sum 9.414 2.080 12.292 15.622 Atomic orbital electron populations 1.22100 0.98416 0.99267 1.00800 1.18905 0.90730 0.94551 0.79954 0.91837 1.21278 1.31806 1.12925 0.90319 0.92429 1.24882 0.94973 0.94964 0.98889 1.69870 1.36322 1.22612 1.23792 0.86580 0.79232 0.79600 0.82105 1.20262 1.21177 1.20274 1.48226 1.48966 1.11368 1.23183 1.21589 1.01472 0.83407 0.99350 1.18350 0.80011 0.87047 0.83363 1.90833 1.57651 1.16612 1.76600 1.23344 1.01114 1.00381 0.97331 1.22270 0.93609 0.93311 0.97355 1.18799 0.99583 0.94136 0.94333 1.21090 0.92096 0.97577 0.93427 1.20959 1.01300 0.93228 0.99373 1.19746 0.98206 0.94536 0.93818 1.19478 0.94873 0.92880 0.95692 1.21872 0.96968 1.01203 0.99213 1.21967 1.01559 1.01427 0.95230 1.21879 0.99017 0.96608 1.01978 1.20614 1.01232 0.97559 0.95885 1.21025 0.99290 0.93268 0.98569 0.95182 0.97047 0.88844 0.92676 0.93362 0.92810 0.91035 0.85361 0.85480 0.86810 0.86109 0.92642 0.92704 0.92609 0.91837 0.92754 0.92361 0.92639 0.92729 0.92164 0.86951 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.95 37.16 0.33 -3.25 16 2 C 0.26 6.65 2.64 -69.08 -0.18 6.47 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.59 -12.63 2.75 -176.90 -0.49 -13.12 16 13 C 0.09 1.46 9.44 59.85 0.57 2.02 16 14 C 0.52 10.88 6.66 -12.96 -0.09 10.80 16 15 O -0.54 -12.86 11.48 5.19 0.06 -12.80 16 16 C -0.20 -3.14 9.14 -37.50 -0.34 -3.49 16 17 C -0.05 -0.65 9.81 -37.16 -0.36 -1.01 16 18 C -0.07 -1.12 4.53 -105.06 -0.48 -1.59 16 19 C -0.02 -0.43 6.60 -39.11 -0.26 -0.68 16 20 C -0.13 -2.20 8.95 -39.64 -0.36 -2.56 16 21 C -0.06 -0.93 4.77 -104.50 -0.50 -1.43 16 22 C -0.03 -0.36 0.85 -155.66 -0.13 -0.49 16 23 C -0.14 -1.37 8.28 37.15 0.31 -1.06 16 24 C -0.14 -1.73 7.13 37.16 0.26 -1.47 16 25 C -0.14 -1.62 8.29 37.16 0.31 -1.31 16 26 C -0.13 -1.91 8.68 -39.65 -0.34 -2.25 16 27 C -0.10 -1.51 9.80 -39.11 -0.38 -1.90 16 28 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.72 6.00 -51.93 -0.31 0.40 16 34 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 35 H 0.13 1.60 6.14 -52.49 -0.32 1.28 16 36 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.11 2.21 7.03 -52.49 -0.37 1.84 16 38 H 0.12 1.95 5.87 -52.49 -0.31 1.65 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.05 0.53 7.37 -51.93 -0.38 0.15 16 42 H 0.06 0.86 7.50 -51.93 -0.39 0.47 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.67 7.50 -51.93 -0.39 0.28 16 45 H 0.05 0.61 7.37 -51.93 -0.38 0.23 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.11 1.34 7.07 -52.49 -0.37 0.97 16 49 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -31.05 381.60 -9.02 -40.07 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.92 Total: 4.64 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.03 Total: -16.03 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.14 Total: -37.73 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.06 Total: -12.80 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.05 -9.02 -40.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728873895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.641 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds