Wall clock time and date at job start Tue Mar 31 2020 11:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46712 * 2 1 4 4 C 1.50697 * 109.46980 * 239.99855 * 2 1 3 5 5 H 1.07997 * 120.00261 * 239.99595 * 4 2 1 6 6 C 1.37878 * 119.99888 * 60.00030 * 4 2 1 7 7 N 1.31518 * 120.00267 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00166 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46978 * 60.00299 * 8 6 4 10 10 H 1.48501 * 109.47150 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47292 * 300.00106 * 8 6 4 12 12 N 1.46497 * 109.46954 * 120.00139 * 2 1 3 13 13 C 1.46502 * 120.00313 * 60.00047 * 12 2 1 14 14 C 1.34776 * 119.99665 * 240.27470 * 12 2 1 15 15 O 1.21696 * 120.00420 * 359.72512 * 14 12 2 16 16 C 1.46433 * 120.00062 * 179.73021 * 14 12 2 17 17 C 1.34809 * 119.99985 * 173.23271 * 16 14 12 18 18 C 1.47203 * 120.00051 * 349.03042 * 17 16 14 19 19 C 1.39830 * 120.16844 * 316.10180 * 18 17 16 20 20 C 1.37901 * 119.82527 * 179.72218 * 19 18 17 21 21 C 1.38402 * 120.16747 * 0.58599 * 20 19 18 22 22 C 1.50704 * 119.82652 * 179.71885 * 21 20 19 23 23 C 1.52994 * 109.46769 * 239.97404 * 22 21 20 24 24 C 1.53000 * 109.46901 * 359.97164 * 22 21 20 25 25 C 1.52997 * 109.47189 * 119.97164 * 22 21 20 26 26 C 1.38400 * 120.34786 * 359.69151 * 21 20 19 27 27 C 1.37893 * 120.16717 * 359.97438 * 26 21 20 28 28 H 1.09002 * 109.46712 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47119 * 299.99905 * 1 2 3 30 30 H 1.09000 * 109.47446 * 60.00122 * 1 2 3 31 31 H 0.96993 * 120.00249 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46635 * 89.99868 * 13 12 2 33 33 H 1.08993 * 109.47031 * 209.99917 * 13 12 2 34 34 H 1.08997 * 109.46861 * 329.99650 * 13 12 2 35 35 H 1.08000 * 119.99818 * 353.22834 * 16 14 12 36 36 H 1.08004 * 119.99813 * 169.03175 * 17 16 14 37 37 H 1.08002 * 120.09403 * 0.02562 * 19 18 17 38 38 H 1.07997 * 119.91438 * 180.29952 * 20 19 18 39 39 H 1.09003 * 109.47637 * 59.99930 * 23 22 21 40 40 H 1.09007 * 109.47055 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.47509 * 299.99797 * 23 22 21 42 42 H 1.09003 * 109.47201 * 60.00236 * 24 22 21 43 43 H 1.08997 * 109.46848 * 180.02562 * 24 22 21 44 44 H 1.08995 * 109.47567 * 300.00295 * 24 22 21 45 45 H 1.09003 * 109.46865 * 60.00340 * 25 22 21 46 46 H 1.08997 * 109.46946 * 179.97438 * 25 22 21 47 47 H 1.08996 * 109.47473 * 300.00260 * 25 22 21 48 48 H 1.07998 * 119.91568 * 180.02562 * 26 21 20 49 49 H 1.08004 * 120.08345 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8267 -0.4199 -5.2204 11 1 3.8073 -1.1190 -4.0078 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7886 -0.0340 2.0861 15 8 3.0826 1.1311 1.8936 16 6 3.2718 -0.7225 3.2847 17 6 4.1511 -0.1122 4.1043 18 6 4.8095 1.1343 3.6804 19 6 5.3171 1.2548 2.3830 20 6 5.9274 2.4279 1.9916 21 6 6.0489 3.4797 2.8829 22 6 6.7229 4.7558 2.4489 23 6 7.9390 5.0185 3.3393 24 6 7.1755 4.6240 0.9933 25 6 5.7385 5.9204 2.5734 26 6 5.5542 3.3660 4.1704 27 6 4.9352 2.2019 4.5746 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.7081 1.1608 -3.4843 32 1 2.4158 -2.7377 0.9716 33 1 1.6238 -2.2852 2.5001 34 1 0.6904 -2.3002 0.9847 35 1 2.9237 -1.7193 3.5121 36 1 4.3725 -0.5378 5.0719 37 1 5.2271 0.4333 1.6878 38 1 6.3156 2.5243 0.9884 39 1 8.6404 4.1888 3.2506 40 1 8.4268 5.9413 3.0252 41 1 7.6166 5.1124 4.3763 42 1 6.3091 4.4368 0.3589 43 1 7.6634 5.5468 0.6796 44 1 7.8768 3.7944 0.9045 45 1 5.4161 6.0143 3.6104 46 1 6.2262 6.8434 2.2600 47 1 4.8721 5.7333 1.9391 48 1 5.6524 4.1913 4.8600 49 1 4.5493 2.1148 5.5796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728873895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:10 Heat of formation + Delta-G solvation = -8.016390 kcal Electronic energy + Delta-G solvation = -26850.933174 eV Core-core repulsion = 23356.810411 eV Total energy + Delta-G solvation = -3494.122764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14613 -40.25868 -37.76101 -36.77121 -34.83867 -34.10553 -31.94164 -31.51175 -29.66831 -28.26471 -28.08525 -27.58186 -27.29337 -25.29602 -23.39557 -23.13292 -21.49911 -20.10419 -19.36415 -18.61696 -18.16526 -17.43196 -16.81283 -16.35496 -16.09053 -15.84146 -15.48402 -15.17519 -14.99622 -14.71624 -14.52968 -14.37030 -14.30257 -13.97966 -13.79826 -13.55931 -13.42115 -13.05070 -13.03156 -12.94970 -12.76234 -12.71925 -12.61599 -12.57826 -12.35730 -12.26949 -12.19311 -12.13164 -11.84557 -11.48556 -11.37659 -11.19454 -10.67350 -10.60028 -10.43208 -9.67335 -9.16341 -8.83643 -8.15497 -6.32514 -0.10165 0.68712 1.05289 1.38309 1.40544 1.48124 2.32979 2.56216 2.59191 3.01775 3.11659 3.70063 3.83625 3.90670 3.93109 4.10653 4.19192 4.22311 4.40064 4.41759 4.57644 4.58288 4.66425 4.71142 4.77789 4.79915 4.83403 4.86044 4.87684 4.98805 5.01115 5.02486 5.06273 5.07393 5.14017 5.16253 5.21406 5.29647 5.35611 5.40225 5.46174 5.47296 5.65250 5.67590 5.69021 5.82816 5.86530 6.06401 6.16070 6.24459 6.75863 6.92637 7.33828 7.58305 8.88182 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.004015 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.204938 B = 6971.630169 C = 8353.265803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.266 3.734 3 H 0.006 0.994 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.262 1.262 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.600 5.600 13 C 0.083 3.917 14 C 0.511 3.489 15 O -0.582 6.582 16 C -0.216 4.216 17 C -0.022 4.022 18 C -0.090 4.090 19 C -0.047 4.047 20 C -0.156 4.156 21 C -0.066 4.066 22 C -0.031 4.031 23 C -0.129 4.129 24 C -0.144 4.144 25 C -0.136 4.136 26 C -0.137 4.137 27 C -0.103 4.103 28 H 0.047 0.953 29 H 0.017 0.983 30 H 0.066 0.934 31 H 0.264 0.736 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.168 0.832 36 H 0.180 0.820 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.032 0.968 48 H 0.142 0.858 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.340 1.323 16.215 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.163 3.837 3 H 0.024 0.976 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.186 1.186 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.330 5.330 13 C -0.059 4.059 14 C 0.302 3.698 15 O -0.465 6.465 16 C -0.236 4.236 17 C -0.041 4.041 18 C -0.090 4.090 19 C -0.066 4.066 20 C -0.174 4.174 21 C -0.066 4.066 22 C -0.031 4.031 23 C -0.186 4.186 24 C -0.201 4.201 25 C -0.193 4.193 26 C -0.155 4.155 27 C -0.120 4.120 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.185 0.815 36 H 0.197 0.803 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.051 0.949 48 H 0.160 0.840 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.361 2.006 15.931 19.110 hybrid contribution -0.256 -0.427 -1.735 1.805 sum 10.105 1.579 14.196 17.497 Atomic orbital electron populations 1.21882 0.97480 0.99987 0.99752 1.18427 0.91336 0.92083 0.81828 0.97585 1.21537 1.31845 1.12952 0.91280 0.92458 1.25723 0.95078 0.95620 1.01951 1.70021 1.37311 1.23909 1.24399 0.85551 0.78351 0.79093 0.78279 1.18625 1.20773 1.20406 1.48220 1.49471 1.13121 1.22146 1.21823 1.01158 0.80621 1.02340 1.19301 0.79130 0.86884 0.84472 1.90815 1.58975 1.18858 1.77833 1.23301 1.03029 1.02036 0.95239 1.22778 0.91241 0.91550 0.98545 1.19136 0.99967 0.96123 0.93815 1.20988 0.94073 0.97227 0.94276 1.21061 1.02505 0.94177 0.99680 1.20075 0.97800 0.94798 0.93922 1.19568 0.95853 0.91736 0.95931 1.21825 0.95660 1.01951 0.99195 1.21952 1.00540 1.02388 0.95200 1.21872 0.98039 0.97245 1.02118 1.21016 1.00199 0.98405 0.95847 1.21451 0.98337 0.92587 0.99666 0.93393 0.96399 0.91488 0.92692 0.92991 0.88377 0.91475 0.81488 0.80310 0.89943 0.87234 0.92965 0.90898 0.91503 0.94553 0.90674 0.92526 0.91533 0.90616 0.94916 0.83994 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 8.95 71.98 0.64 -6.00 16 2 C 0.27 14.33 2.64 44.25 0.12 14.44 16 3 H 0.01 0.40 6.90 -2.39 -0.02 0.38 16 4 C -0.54 -30.16 8.37 25.60 0.21 -29.95 16 5 H 0.06 3.13 7.65 -2.91 -0.02 3.11 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -54.27 11.32 21.45 0.24 -54.03 16 8 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 9 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 N -0.60 -26.32 2.75 -831.82 -2.29 -28.60 16 13 C 0.08 2.69 9.44 127.77 1.21 3.90 16 14 C 0.51 21.73 6.66 86.38 0.58 22.30 16 15 O -0.58 -29.60 11.48 -4.33 -0.05 -29.65 16 16 C -0.22 -6.33 9.14 23.62 0.22 -6.12 16 17 C -0.02 -0.56 9.81 23.84 0.23 -0.33 16 18 C -0.09 -2.89 4.53 -20.15 -0.09 -2.98 16 19 C -0.05 -1.81 6.60 22.58 0.15 -1.66 16 20 C -0.16 -5.66 8.95 22.23 0.20 -5.46 16 21 C -0.07 -1.97 4.77 -19.79 -0.09 -2.06 16 22 C -0.03 -0.74 0.85 -52.93 -0.05 -0.78 16 23 C -0.13 -2.32 8.28 71.98 0.60 -1.72 16 24 C -0.14 -3.55 7.13 71.98 0.51 -3.04 16 25 C -0.14 -3.06 8.29 71.98 0.60 -2.46 16 26 C -0.14 -3.64 8.68 22.23 0.19 -3.45 16 27 C -0.10 -2.78 9.80 22.57 0.22 -2.56 16 28 H 0.05 2.17 6.66 -2.39 -0.02 2.15 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 31 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 2.29 6.00 -2.39 -0.01 2.27 16 34 H 0.07 2.22 6.43 -2.39 -0.02 2.21 16 35 H 0.17 3.48 6.14 -2.91 -0.02 3.46 16 36 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.08 3.54 7.03 -2.91 -0.02 3.52 16 38 H 0.11 4.01 5.87 -2.91 -0.02 3.99 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.07 1.06 7.37 -2.39 -0.02 1.04 16 42 H 0.04 1.07 7.50 -2.39 -0.02 1.05 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.38 7.50 -2.39 -0.02 1.36 16 45 H 0.07 1.33 7.37 -2.39 -0.02 1.32 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.14 2.89 7.07 -2.91 -0.02 2.87 16 49 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -73.84 381.60 6.74 -67.10 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.92 Total: 25.66 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 5.89 Total: -26.59 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -2.05 Total: -82.63 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.05 Total: -29.65 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -73.84 6.74 -67.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728873895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.082 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds