Wall clock time and date at job start Tue Mar 31 2020 10:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.45905 * 2 1 4 4 C 1.53037 * 109.44933 * 119.96847 * 2 1 3 5 5 C 1.52755 * 109.38368 * 181.25574 * 4 2 1 6 6 N 1.46928 * 109.00667 * 305.58622 * 5 4 2 7 7 C 1.34782 * 120.63213 * 233.58056 * 6 5 4 8 8 O 1.21279 * 119.99867 * 179.71701 * 7 6 5 9 9 C 1.50703 * 119.99855 * 359.72589 * 7 6 5 10 10 C 1.50696 * 109.46916 * 179.97438 * 9 7 6 11 11 C 1.37640 * 120.13043 * 264.72650 * 10 9 7 12 12 C 1.38610 * 120.24667 * 179.70706 * 11 10 9 13 13 C 1.38652 * 120.50149 * 0.59076 * 12 11 10 14 14 C 1.37598 * 120.25288 * 359.68994 * 13 12 11 15 15 C 1.40698 * 120.12643 * 85.00515 * 10 9 7 16 16 C 1.41400 * 120.24185 * 0.02562 * 15 10 9 17 17 H 1.07994 * 120.00232 * 334.05601 * 16 15 10 18 18 C 1.39947 * 119.99463 * 154.05155 * 16 15 10 19 19 N 1.30819 * 120.00350 * 343.66346 * 18 16 15 20 20 Si 1.86802 * 119.99602 * 163.66262 * 18 16 15 21 21 H 1.48503 * 109.47089 * 89.99931 * 20 18 16 22 22 H 1.48504 * 109.46951 * 209.99873 * 20 18 16 23 23 H 1.48500 * 109.47176 * 330.00029 * 20 18 16 24 24 C 1.46920 * 118.73666 * 53.31465 * 6 5 4 25 25 C 1.53034 * 109.46074 * 240.03242 * 2 1 3 26 26 C 1.52997 * 109.50077 * 58.67495 * 25 2 1 27 27 C 1.53006 * 109.52375 * 298.59629 * 25 2 1 28 28 H 1.09003 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47364 * 299.97000 * 1 2 3 30 30 H 1.09006 * 109.47048 * 59.97253 * 1 2 3 31 31 H 1.09000 * 109.49619 * 301.33385 * 4 2 1 32 32 H 1.09003 * 109.49606 * 61.39112 * 4 2 1 33 33 H 1.09005 * 109.51026 * 185.70652 * 5 4 2 34 34 H 1.08997 * 109.43460 * 65.42605 * 5 4 2 35 35 H 1.08995 * 109.47324 * 299.99912 * 9 7 6 36 36 H 1.09000 * 109.46850 * 59.99622 * 9 7 6 37 37 H 1.08001 * 119.87314 * 359.97438 * 11 10 9 38 38 H 1.07998 * 119.74723 * 180.30582 * 12 11 10 39 39 H 1.08006 * 119.87850 * 179.70652 * 13 12 11 40 40 H 1.07998 * 120.12949 * 180.02562 * 14 13 12 41 41 H 0.97000 * 120.00212 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.59277 * 66.43139 * 24 6 5 43 43 H 1.09009 * 109.58739 * 186.71101 * 24 6 5 44 44 H 1.09005 * 109.47431 * 179.83899 * 26 25 2 45 45 H 1.09000 * 109.47406 * 299.83617 * 26 25 2 46 46 H 1.09003 * 109.47014 * 59.83791 * 26 25 2 47 47 H 1.09005 * 109.46873 * 300.14369 * 27 25 2 48 48 H 1.08996 * 109.47386 * 60.14371 * 27 25 2 49 49 H 1.09003 * 109.47045 * 180.14684 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 3.5668 -0.6927 1.2645 6 7 4.0676 -1.2493 0.0003 7 6 4.9610 -2.2584 0.0003 8 8 5.3628 -2.7126 -1.0499 9 6 5.4605 -2.8225 1.3055 10 6 6.4422 -3.9322 1.0302 11 6 6.0177 -5.2414 1.0119 12 6 6.9173 -6.2635 0.7530 13 6 8.2551 -5.9818 0.5218 14 6 8.7030 -4.6809 0.5409 15 6 7.7973 -3.6345 0.7967 16 6 8.2461 -2.2938 0.8194 17 1 7.5593 -1.4906 0.5968 18 6 9.5802 -2.0077 1.1304 19 7 10.3274 -2.9157 1.7038 20 14 10.2942 -0.3294 0.7267 21 1 10.0891 0.5857 1.8781 22 1 11.7477 -0.4626 0.4530 23 1 9.6133 0.2229 -0.4719 24 6 3.5714 -0.6889 -1.2640 25 6 2.0399 -0.7208 -1.2500 26 6 1.5031 -0.0188 -2.4990 27 6 1.5594 -2.1733 -1.2344 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5134 0.8902 30 1 -0.3633 0.5143 -0.8898 31 1 1.6569 -0.2208 2.1398 32 1 1.6968 -1.7555 1.2386 33 1 3.9341 -1.2912 2.0982 34 1 3.9096 0.3364 1.3719 35 1 5.9523 -2.0353 1.8770 36 1 4.6196 -3.2151 1.8771 37 1 4.9789 -5.4727 1.1958 38 1 6.5745 -7.2875 0.7357 39 1 8.9483 -6.7865 0.3257 40 1 9.7453 -4.4637 0.3601 41 1 11.2520 -2.7173 1.9198 42 1 3.9145 0.3406 -1.3671 43 1 3.9438 -1.2834 -2.0983 44 1 1.8688 -0.5308 -3.3891 45 1 0.4133 -0.0418 -2.4887 46 1 1.8446 1.0163 -2.5091 47 1 1.9412 -2.6727 -0.3439 48 1 0.4697 -2.1956 -1.2245 49 1 1.9252 -2.6866 -2.1238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759309799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:29 Heat of formation + Delta-G solvation = -36.107078 kcal Electronic energy + Delta-G solvation = -27493.124660 eV Core-core repulsion = 23997.783793 eV Total energy + Delta-G solvation = -3495.340867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.38353 -38.36177 -37.07096 -34.41188 -33.57261 -32.64583 -31.57438 -29.40930 -28.62691 -27.64074 -27.34897 -25.85391 -24.80415 -23.16433 -22.14545 -20.88582 -20.17176 -18.68846 -18.09355 -17.10091 -16.51716 -15.69184 -15.49246 -15.18653 -15.03627 -14.40865 -14.30582 -14.03475 -13.69270 -13.55825 -13.28082 -13.07835 -12.95336 -12.54464 -12.36235 -12.21115 -11.99940 -11.88597 -11.70062 -11.57304 -11.51969 -11.25870 -11.13061 -11.07703 -10.99750 -10.91588 -10.65793 -10.62107 -10.36132 -10.31549 -10.19931 -9.43127 -9.31403 -9.11198 -9.02759 -8.21975 -7.26075 -7.23313 -6.69052 -4.29043 2.82735 3.01095 3.09351 3.15120 3.31123 3.38339 3.49980 3.97625 4.51861 4.59746 4.65950 4.70839 4.94101 5.15759 5.22197 5.25006 5.33142 5.40667 5.48188 5.58590 5.61659 5.72710 5.77034 5.79751 5.83142 5.86450 5.88280 5.90765 5.94750 5.99642 6.07907 6.12651 6.15853 6.24307 6.32535 6.33796 6.46165 6.47734 6.55808 6.83483 6.93472 7.13582 7.34677 7.47465 7.68948 7.88438 7.98994 8.12829 8.18145 8.36873 8.69983 8.91647 8.97107 9.06922 10.25204 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.004238 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.790041 B = 6604.537578 C = 7670.414676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.069 0.931 4 C -0.133 4.133 5 C 0.109 3.891 6 N -0.623 5.623 7 C 0.519 3.481 8 O -0.521 6.521 9 C -0.069 4.069 10 C -0.180 4.180 11 C -0.081 4.081 12 C -0.239 4.239 13 C -0.107 4.107 14 C -0.159 4.159 15 C 0.129 3.871 16 C -0.456 4.456 17 H 0.073 0.927 18 C 0.078 3.922 19 N -0.796 5.796 20 Si 0.901 3.099 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.262 1.262 24 C 0.122 3.878 25 C -0.073 4.073 26 C -0.141 4.141 27 C -0.139 4.139 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.279 0.721 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.910 7.666 -0.711 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.087 0.913 4 C -0.171 4.171 5 C -0.015 4.015 6 N -0.359 5.359 7 C 0.309 3.691 8 O -0.395 6.395 9 C -0.108 4.108 10 C -0.182 4.182 11 C -0.100 4.100 12 C -0.259 4.259 13 C -0.126 4.126 14 C -0.179 4.179 15 C 0.127 3.873 16 C -0.486 4.486 17 H 0.091 0.909 18 C -0.140 4.140 19 N -0.422 5.422 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.186 1.186 24 C -0.001 4.001 25 C -0.074 4.074 26 C -0.199 4.199 27 C -0.196 4.196 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.411 7.365 -1.184 17.121 hybrid contribution 0.389 0.813 -0.077 0.904 sum -15.021 8.177 -1.261 17.149 Atomic orbital electron populations 1.21935 0.95347 1.01926 1.01411 1.21105 0.95462 0.99080 0.94192 0.91256 1.21983 0.95679 1.01676 0.97808 1.21576 0.93647 0.99384 0.86875 1.48168 1.44728 1.36837 1.06138 1.21202 0.77259 0.78049 0.92633 1.90662 1.56045 1.58929 1.33834 1.20279 0.97887 0.98812 0.93847 1.19073 0.94444 0.91607 1.13053 1.20283 0.96546 0.92928 1.00217 1.20291 0.94164 0.96564 1.14859 1.20667 0.94695 0.96180 1.01059 1.21286 1.00125 0.91495 1.04956 1.17327 0.89880 0.93262 0.86832 1.19457 0.94447 0.93063 1.41593 0.90867 1.25863 0.97021 0.98647 0.92430 1.69819 1.08392 1.34904 1.29060 0.86430 0.78593 0.82451 0.79973 1.19562 1.20093 1.18577 1.21531 0.91970 0.98575 0.88013 1.20894 0.95335 0.96147 0.95047 1.21864 1.00954 1.00122 0.96927 1.21887 1.00223 0.95077 1.02413 0.92431 0.92980 0.92493 0.91003 0.91093 0.89355 0.91860 0.88727 0.90843 0.89883 0.89730 0.89632 0.86577 0.91022 0.92382 0.89165 0.92493 0.92192 0.92680 0.92184 0.92812 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.49 37.16 0.32 -0.85 16 2 C -0.08 -0.74 2.00 -90.58 -0.18 -0.92 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.13 -1.28 5.00 -26.84 -0.13 -1.42 16 5 C 0.11 1.29 6.31 -3.93 -0.02 1.27 16 6 N -0.62 -9.64 2.42 -173.03 -0.42 -10.06 16 7 C 0.52 10.43 7.33 -10.98 -0.08 10.35 16 8 O -0.52 -12.77 15.45 5.56 0.09 -12.68 16 9 C -0.07 -1.38 3.53 -29.04 -0.10 -1.48 16 10 C -0.18 -4.41 4.43 -103.91 -0.46 -4.87 16 11 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 12 C -0.24 -5.69 10.05 -39.29 -0.39 -6.08 16 13 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 14 C -0.16 -4.34 8.68 -38.87 -0.34 -4.67 16 15 C 0.13 3.52 5.56 -106.82 -0.59 2.92 16 16 C -0.46 -12.20 8.14 -37.74 -0.31 -12.51 16 17 H 0.07 1.92 6.68 -52.49 -0.35 1.57 16 18 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 19 N -0.80 -20.80 10.97 55.55 0.61 -20.20 16 20 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 24 C 0.12 1.71 5.11 -3.71 -0.02 1.69 16 25 C -0.07 -0.79 0.54 -154.39 -0.08 -0.87 16 26 C -0.14 -1.29 8.09 37.16 0.30 -0.99 16 27 C -0.14 -1.62 7.66 37.16 0.28 -1.33 16 28 H 0.06 0.46 6.47 -51.93 -0.34 0.13 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.42 6.41 -51.93 -0.33 0.08 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.73 6.34 -51.93 -0.33 0.41 16 33 H 0.09 1.03 5.94 -51.93 -0.31 0.72 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.88 6.87 -51.93 -0.36 1.52 16 36 H 0.07 1.25 7.59 -51.93 -0.39 0.85 16 37 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.12 3.24 6.22 -52.49 -0.33 2.92 16 41 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.48 7.00 -51.92 -0.36 1.12 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.48 6.41 -51.93 -0.33 0.15 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.79 5.97 -51.93 -0.31 0.48 16 48 H 0.05 0.53 6.48 -51.93 -0.34 0.19 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -30.57 371.51 -9.71 -40.28 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.86 Total: 6.21 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -2.69 Total: -23.28 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 0.19 Total: -30.26 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.57 -9.71 -40.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759309799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.168 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds