Wall clock time and date at job start Tue Mar 31 2020 10:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.45905 * 2 1 4 4 C 1.53037 * 109.44933 * 119.96847 * 2 1 3 5 5 C 1.52755 * 109.38368 * 181.25574 * 4 2 1 6 6 N 1.46928 * 109.00667 * 305.58622 * 5 4 2 7 7 C 1.34782 * 120.63213 * 233.58056 * 6 5 4 8 8 O 1.21279 * 119.99867 * 179.71701 * 7 6 5 9 9 C 1.50703 * 119.99855 * 359.72589 * 7 6 5 10 10 C 1.50696 * 109.46916 * 179.97438 * 9 7 6 11 11 C 1.37640 * 120.13043 * 264.72650 * 10 9 7 12 12 C 1.38610 * 120.24667 * 179.70706 * 11 10 9 13 13 C 1.38652 * 120.50149 * 0.59076 * 12 11 10 14 14 C 1.37598 * 120.25288 * 359.68994 * 13 12 11 15 15 C 1.40698 * 120.12643 * 85.00515 * 10 9 7 16 16 C 1.41400 * 120.24185 * 0.02562 * 15 10 9 17 17 H 1.07994 * 120.00232 * 334.05601 * 16 15 10 18 18 C 1.39947 * 119.99463 * 154.05155 * 16 15 10 19 19 N 1.30819 * 120.00350 * 343.66346 * 18 16 15 20 20 Si 1.86802 * 119.99602 * 163.66262 * 18 16 15 21 21 H 1.48503 * 109.47089 * 89.99931 * 20 18 16 22 22 H 1.48504 * 109.46951 * 209.99873 * 20 18 16 23 23 H 1.48500 * 109.47176 * 330.00029 * 20 18 16 24 24 C 1.46920 * 118.73666 * 53.31465 * 6 5 4 25 25 C 1.53034 * 109.46074 * 240.03242 * 2 1 3 26 26 C 1.52997 * 109.50077 * 58.67495 * 25 2 1 27 27 C 1.53006 * 109.52375 * 298.59629 * 25 2 1 28 28 H 1.09003 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47364 * 299.97000 * 1 2 3 30 30 H 1.09006 * 109.47048 * 59.97253 * 1 2 3 31 31 H 1.09000 * 109.49619 * 301.33385 * 4 2 1 32 32 H 1.09003 * 109.49606 * 61.39112 * 4 2 1 33 33 H 1.09005 * 109.51026 * 185.70652 * 5 4 2 34 34 H 1.08997 * 109.43460 * 65.42605 * 5 4 2 35 35 H 1.08995 * 109.47324 * 299.99912 * 9 7 6 36 36 H 1.09000 * 109.46850 * 59.99622 * 9 7 6 37 37 H 1.08001 * 119.87314 * 359.97438 * 11 10 9 38 38 H 1.07998 * 119.74723 * 180.30582 * 12 11 10 39 39 H 1.08006 * 119.87850 * 179.70652 * 13 12 11 40 40 H 1.07998 * 120.12949 * 180.02562 * 14 13 12 41 41 H 0.97000 * 120.00212 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.59277 * 66.43139 * 24 6 5 43 43 H 1.09009 * 109.58739 * 186.71101 * 24 6 5 44 44 H 1.09005 * 109.47431 * 179.83899 * 26 25 2 45 45 H 1.09000 * 109.47406 * 299.83617 * 26 25 2 46 46 H 1.09003 * 109.47014 * 59.83791 * 26 25 2 47 47 H 1.09005 * 109.46873 * 300.14369 * 27 25 2 48 48 H 1.08996 * 109.47386 * 60.14371 * 27 25 2 49 49 H 1.09003 * 109.47045 * 180.14684 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 3.5668 -0.6927 1.2645 6 7 4.0676 -1.2493 0.0003 7 6 4.9610 -2.2584 0.0003 8 8 5.3628 -2.7126 -1.0499 9 6 5.4605 -2.8225 1.3055 10 6 6.4422 -3.9322 1.0302 11 6 6.0177 -5.2414 1.0119 12 6 6.9173 -6.2635 0.7530 13 6 8.2551 -5.9818 0.5218 14 6 8.7030 -4.6809 0.5409 15 6 7.7973 -3.6345 0.7967 16 6 8.2461 -2.2938 0.8194 17 1 7.5593 -1.4906 0.5968 18 6 9.5802 -2.0077 1.1304 19 7 10.3274 -2.9157 1.7038 20 14 10.2942 -0.3294 0.7267 21 1 10.0891 0.5857 1.8781 22 1 11.7477 -0.4626 0.4530 23 1 9.6133 0.2229 -0.4719 24 6 3.5714 -0.6889 -1.2640 25 6 2.0399 -0.7208 -1.2500 26 6 1.5031 -0.0188 -2.4990 27 6 1.5594 -2.1733 -1.2344 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5134 0.8902 30 1 -0.3633 0.5143 -0.8898 31 1 1.6569 -0.2208 2.1398 32 1 1.6968 -1.7555 1.2386 33 1 3.9341 -1.2912 2.0982 34 1 3.9096 0.3364 1.3719 35 1 5.9523 -2.0353 1.8770 36 1 4.6196 -3.2151 1.8771 37 1 4.9789 -5.4727 1.1958 38 1 6.5745 -7.2875 0.7357 39 1 8.9483 -6.7865 0.3257 40 1 9.7453 -4.4637 0.3601 41 1 11.2520 -2.7173 1.9198 42 1 3.9145 0.3406 -1.3671 43 1 3.9438 -1.2834 -2.0983 44 1 1.8688 -0.5308 -3.3891 45 1 0.4133 -0.0418 -2.4887 46 1 1.8446 1.0163 -2.5091 47 1 1.9412 -2.6727 -0.3439 48 1 0.4697 -2.1956 -1.2245 49 1 1.9252 -2.6866 -2.1238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759309799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:28 Heat of formation + Delta-G solvation = -50.826051 kcal Electronic energy + Delta-G solvation = -27493.762923 eV Core-core repulsion = 23997.783793 eV Total energy + Delta-G solvation = -3495.979130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55928 -39.85757 -38.76655 -35.62468 -35.50564 -33.65840 -33.21407 -31.35415 -29.57634 -29.07398 -28.21082 -27.38429 -26.49456 -24.18618 -23.01743 -22.82935 -21.87722 -20.10368 -19.06548 -19.03255 -17.95235 -17.31730 -16.86137 -16.46060 -16.25478 -16.03445 -15.48856 -15.35486 -15.09622 -14.87828 -14.43878 -14.42202 -14.35895 -14.00023 -13.57390 -13.44781 -13.31811 -13.04509 -12.89424 -12.79887 -12.76076 -12.71637 -12.61201 -12.56123 -12.45462 -12.14241 -12.06301 -11.93463 -11.55451 -11.33295 -11.24038 -11.14088 -11.03785 -11.02245 -10.60749 -9.47918 -9.23241 -9.15844 -8.60043 -6.29642 0.99189 1.12719 1.34200 1.45618 1.52602 1.84007 2.18663 2.19741 2.77748 3.59458 3.75170 3.78699 3.81244 4.07922 4.09887 4.24558 4.29913 4.37492 4.42342 4.52361 4.56114 4.59869 4.66538 4.69812 4.75669 4.79258 4.81869 4.87222 4.89367 4.95568 5.01177 5.07538 5.08391 5.13053 5.16509 5.19006 5.20295 5.28408 5.36072 5.41803 5.54316 5.54658 5.64919 5.74174 5.77424 6.03411 6.16014 6.20813 6.41837 6.53657 6.73393 6.99089 7.10792 7.41340 8.36597 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.004238 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.790041 B = 6604.537578 C = 7670.414676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 H 0.077 0.923 4 C -0.127 4.127 5 C 0.098 3.902 6 N -0.613 5.613 7 C 0.517 3.483 8 O -0.579 6.579 9 C -0.064 4.064 10 C -0.187 4.187 11 C -0.092 4.092 12 C -0.242 4.242 13 C -0.117 4.117 14 C -0.194 4.194 15 C 0.097 3.903 16 C -0.483 4.483 17 H 0.067 0.933 18 C 0.038 3.962 19 N -0.826 5.826 20 Si 0.970 3.030 21 H -0.253 1.253 22 H -0.267 1.267 23 H -0.270 1.270 24 C 0.118 3.882 25 C -0.067 4.067 26 C -0.138 4.138 27 C -0.135 4.135 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.286 0.714 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.075 0.925 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.461 9.362 0.282 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 H 0.095 0.905 4 C -0.165 4.165 5 C -0.024 4.024 6 N -0.346 5.346 7 C 0.307 3.693 8 O -0.457 6.457 9 C -0.103 4.103 10 C -0.189 4.189 11 C -0.110 4.110 12 C -0.261 4.261 13 C -0.136 4.136 14 C -0.213 4.213 15 C 0.095 3.905 16 C -0.512 4.512 17 H 0.086 0.914 18 C -0.177 4.177 19 N -0.452 5.452 20 Si 0.792 3.208 21 H -0.177 1.177 22 H -0.191 1.191 23 H -0.195 1.195 24 C -0.005 4.005 25 C -0.067 4.067 26 C -0.196 4.196 27 C -0.192 4.192 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.094 0.906 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.004 9.085 -0.154 20.167 hybrid contribution 1.105 0.225 -0.378 1.190 sum -16.899 9.311 -0.532 19.302 Atomic orbital electron populations 1.21896 0.93663 1.02116 1.02496 1.21106 0.96756 0.98962 0.92719 0.90507 1.21965 0.93480 1.01836 0.99231 1.21918 0.95569 0.99894 0.84985 1.48170 1.43078 1.35161 1.08224 1.21125 0.77694 0.78828 0.91622 1.90636 1.58484 1.61247 1.35380 1.20250 0.98023 0.97705 0.94341 1.19561 0.94434 0.93530 1.11396 1.20708 0.98145 0.92603 0.99545 1.20703 0.93635 0.98280 1.13478 1.20946 0.95975 0.95889 1.00752 1.21299 0.99598 0.92944 1.07470 1.17718 0.91368 0.93667 0.87783 1.19579 0.95520 0.92958 1.43193 0.91445 1.26642 0.96869 1.02434 0.91737 1.69875 1.08921 1.36820 1.29579 0.85388 0.77893 0.77900 0.79666 1.17749 1.19108 1.19502 1.21674 0.94510 0.98062 0.86254 1.20856 0.92602 0.96152 0.97129 1.21850 1.01982 1.00219 0.95510 1.21858 1.01489 0.95319 1.00580 0.92655 0.91691 0.91711 0.88301 0.91696 0.89081 0.90422 0.88804 0.87547 0.86822 0.86682 0.87623 0.88515 0.90330 0.91401 0.92470 0.93511 0.90384 0.91743 0.93773 0.90617 0.94898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.49 71.98 0.61 -1.07 16 2 C -0.08 -1.18 2.00 -10.77 -0.02 -1.20 16 3 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.13 -2.04 5.00 30.52 0.15 -1.89 16 5 C 0.10 2.13 6.31 86.22 0.54 2.67 16 6 N -0.61 -18.72 2.42 -819.73 -1.98 -20.70 16 7 C 0.52 21.15 7.33 87.66 0.64 21.80 16 8 O -0.58 -29.66 15.45 -3.03 -0.05 -29.71 16 9 C -0.06 -2.56 3.53 29.10 0.10 -2.45 16 10 C -0.19 -9.34 4.43 -19.41 -0.09 -9.42 16 11 C -0.09 -4.28 9.66 22.22 0.21 -4.07 16 12 C -0.24 -11.34 10.05 22.46 0.23 -11.11 16 13 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 14 C -0.19 -11.00 8.68 22.73 0.20 -10.80 16 15 C 0.10 5.47 5.56 -21.29 -0.12 5.35 16 16 C -0.48 -26.84 8.14 23.46 0.19 -26.65 16 17 H 0.07 3.69 6.68 -2.91 -0.02 3.67 16 18 C 0.04 1.96 5.16 85.26 0.44 2.40 16 19 N -0.83 -44.52 10.97 21.83 0.24 -44.28 16 20 Si 0.97 39.96 29.59 68.60 2.03 41.99 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 C 0.12 3.28 5.11 86.36 0.44 3.72 16 25 C -0.07 -1.33 0.54 -52.10 -0.03 -1.36 16 26 C -0.14 -2.26 8.09 71.98 0.58 -1.68 16 27 C -0.14 -3.02 7.66 71.98 0.55 -2.47 16 28 H 0.05 0.68 6.47 -2.39 -0.02 0.67 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.67 6.41 -2.38 -0.02 0.66 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.16 6.34 -2.39 -0.02 1.15 16 33 H 0.09 1.93 5.94 -2.38 -0.01 1.91 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 3.75 6.87 -2.39 -0.02 3.74 16 36 H 0.11 3.45 7.59 -2.39 -0.02 3.44 16 37 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 39 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.10 5.73 6.22 -2.91 -0.02 5.71 16 41 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.98 7.00 -2.38 -0.02 1.97 16 44 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.08 1.02 6.41 -2.39 -0.02 1.00 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.04 1.12 5.97 -2.38 -0.01 1.10 16 48 H 0.08 1.33 6.48 -2.39 -0.02 1.32 16 49 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -70.18 371.51 6.04 -64.14 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.93 Total: 32.50 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 4.87 Total: -43.94 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -1.74 Total: -64.98 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.05 Total: -29.71 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -70.18 6.04 -64.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759309799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.313 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds