Wall clock time and date at job start Tue Mar 31 2020 10:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47061 * 2 1 4 4 C 1.52997 * 109.47122 * 239.99435 * 2 1 3 5 5 C 1.52996 * 109.47399 * 300.00166 * 4 2 1 6 6 C 1.52996 * 109.47212 * 300.00035 * 5 4 2 7 7 C 1.52999 * 109.47293 * 59.99873 * 6 5 4 8 8 H 1.09004 * 109.47310 * 59.99966 * 7 6 5 9 9 N 1.46496 * 109.47465 * 179.97438 * 7 6 5 10 10 C 1.34773 * 120.00577 * 275.00367 * 9 7 6 11 11 O 1.21283 * 119.99415 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00343 * 179.97438 * 10 9 7 13 13 C 1.50709 * 109.47092 * 179.97438 * 12 10 9 14 14 C 1.37635 * 120.12937 * 264.72661 * 13 12 10 15 15 C 1.38615 * 120.24657 * 179.72175 * 14 13 12 16 16 C 1.38654 * 120.50071 * 0.55616 * 15 14 13 17 17 C 1.37601 * 120.24810 * 359.72185 * 16 15 14 18 18 C 1.40698 * 120.12483 * 84.99878 * 13 12 10 19 19 C 1.41397 * 120.24632 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99788 * 334.09060 * 19 18 13 21 21 C 1.39946 * 120.00118 * 154.08944 * 19 18 13 22 22 N 1.30818 * 119.99829 * 343.61231 * 21 19 18 23 23 Si 1.86805 * 119.99971 * 163.61994 * 21 19 18 24 24 H 1.48501 * 109.47224 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46970 * 120.00032 * 23 21 19 26 26 H 1.48498 * 109.46580 * 239.99549 * 23 21 19 27 27 C 1.52996 * 109.46914 * 119.99753 * 2 1 3 28 28 H 1.09002 * 109.47678 * 180.02562 * 27 2 1 29 29 C 1.53007 * 109.47138 * 300.00103 * 27 2 1 30 30 H 1.08996 * 109.46837 * 300.00491 * 1 2 3 31 31 H 1.08998 * 109.46671 * 60.00149 * 1 2 3 32 32 H 1.08995 * 109.47061 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47008 * 60.00623 * 4 2 1 34 34 H 1.09002 * 109.46617 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47083 * 59.99980 * 5 4 2 36 36 H 1.09001 * 109.46687 * 180.02562 * 5 4 2 37 37 H 1.09002 * 109.47173 * 300.00383 * 6 5 4 38 38 H 1.09002 * 109.47428 * 180.02562 * 6 5 4 39 39 H 0.97004 * 119.99629 * 95.00022 * 9 7 6 40 40 H 1.08995 * 109.47018 * 299.99613 * 12 10 9 41 41 H 1.09000 * 109.47341 * 60.00292 * 12 10 9 42 42 H 1.08001 * 119.87506 * 359.97438 * 14 13 12 43 43 H 1.07995 * 119.74601 * 180.25404 * 15 14 13 44 44 H 1.08004 * 119.87266 * 179.74851 * 16 15 14 45 45 H 1.08005 * 120.12339 * 180.02562 * 17 16 15 46 46 H 0.96998 * 120.00020 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.46907 * 180.02562 * 29 27 2 48 48 H 1.08994 * 109.46832 * 299.99705 * 29 27 2 49 49 H 1.08996 * 109.47200 * 60.00028 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5301 -2.1638 -1.2491 6 6 2.0400 -2.8850 0.0002 7 6 1.5300 -2.1637 1.2494 8 1 0.4400 -2.1637 1.2494 9 7 2.0177 -2.8546 2.4456 10 6 1.3405 -3.9112 2.9369 11 8 0.3270 -4.2898 2.3888 12 6 1.8426 -4.6222 4.1670 13 6 0.9119 -5.7581 4.5058 14 6 -0.0924 -5.5763 5.4292 15 6 -0.9535 -6.6177 5.7384 16 6 -0.8071 -7.8557 5.1314 17 6 0.1934 -8.0617 4.2095 18 6 1.0698 -7.0100 3.8835 19 6 2.1013 -7.2100 2.9372 20 1 2.4915 -6.3720 2.3786 21 6 2.6165 -8.4936 2.7244 22 7 2.3914 -9.4417 3.5972 23 14 3.6257 -8.8531 1.1940 24 1 3.7341 -7.6212 0.3719 25 1 4.9833 -9.3048 1.5913 26 1 2.9612 -9.9193 0.4023 27 6 2.0400 -0.7212 1.2493 28 1 3.1300 -0.7209 1.2496 29 6 1.5299 0.0001 2.4985 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7217 -1.2488 35 1 0.4401 -2.1638 -1.2491 36 1 1.8938 -2.6778 -2.1388 37 1 3.1300 -2.8850 0.0003 38 1 1.6770 -3.9128 0.0000 39 1 2.8282 -2.5515 2.8841 40 1 2.8416 -5.0148 3.9774 41 1 1.8797 -3.9221 5.0017 42 1 -0.2126 -4.6176 5.9117 43 1 -1.7413 -6.4650 6.4611 44 1 -1.4812 -8.6612 5.3829 45 1 0.3053 -9.0267 3.7376 46 1 2.7482 -10.3315 3.4495 47 1 1.8936 -0.5134 3.3885 48 1 1.8933 1.0277 2.4985 49 1 0.4400 0.0002 2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776779630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:15 Heat of formation + Delta-G solvation = -52.136236 kcal Electronic energy + Delta-G solvation = -27179.813730 eV Core-core repulsion = 23683.777787 eV Total energy + Delta-G solvation = -3496.035944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.17055 -38.53191 -37.13863 -34.03851 -33.56971 -32.82134 -31.72056 -30.13612 -29.38838 -27.59936 -26.59335 -25.63557 -24.86938 -22.28243 -21.35040 -20.87894 -20.32368 -19.43468 -18.45936 -17.12504 -16.40923 -16.17128 -15.37694 -15.17805 -14.71734 -14.50378 -14.34579 -14.03935 -13.81020 -13.64631 -13.35141 -13.03712 -12.85934 -12.57992 -12.51786 -12.33727 -12.07355 -11.68111 -11.57343 -11.52041 -11.44546 -11.25406 -11.11278 -10.95115 -10.92467 -10.77223 -10.63311 -10.47791 -10.34698 -10.31973 -9.95906 -9.43040 -9.31789 -9.12407 -9.02056 -8.55318 -7.25903 -7.23374 -6.69082 -4.28928 2.82047 3.02666 3.10055 3.15388 3.30665 3.44233 3.74231 3.97414 4.51426 4.60878 4.69872 4.72599 4.99614 5.13040 5.27104 5.30427 5.35749 5.36833 5.49575 5.51034 5.66872 5.73350 5.74307 5.82598 5.85862 5.88419 5.94494 6.00337 6.07666 6.10916 6.14868 6.19024 6.23461 6.29942 6.33610 6.43091 6.49273 6.53668 6.56190 6.85669 6.97406 7.13904 7.34881 7.47637 7.69839 7.96113 8.05440 8.14520 8.18441 8.37003 8.70473 8.96887 8.98547 9.07102 10.25282 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.004265 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.818426 B = 6564.190117 C = 7991.812357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 H 0.070 0.930 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.152 3.848 8 H 0.087 0.913 9 N -0.741 5.741 10 C 0.516 3.484 11 O -0.521 6.521 12 C -0.072 4.072 13 C -0.178 4.178 14 C -0.082 4.082 15 C -0.239 4.239 16 C -0.108 4.108 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.901 3.099 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.272 1.272 27 C -0.093 4.093 28 H 0.072 0.928 29 C -0.148 4.148 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.393 0.607 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.278 0.722 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 16.191 -5.895 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.100 4.100 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.171 4.171 7 C 0.047 3.953 8 H 0.105 0.895 9 N -0.394 5.394 10 C 0.303 3.697 11 O -0.395 6.395 12 C -0.112 4.112 13 C -0.180 4.180 14 C -0.100 4.100 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.126 3.874 19 C -0.485 4.485 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.726 3.274 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.198 1.198 27 C -0.112 4.112 28 H 0.090 0.910 29 C -0.205 4.205 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.226 0.774 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.127 15.641 -6.235 16.971 hybrid contribution 0.919 -0.185 -0.465 1.046 sum 3.045 15.455 -6.700 17.118 Atomic orbital electron populations 1.22034 0.95231 1.02635 1.01468 1.21064 0.96126 0.98758 0.94051 0.91201 1.21597 1.00461 0.95920 0.97284 1.21533 1.01253 0.95121 0.97737 1.21946 1.00662 1.00441 0.94018 1.20897 0.99972 0.89814 0.84618 0.89473 1.46209 1.29676 1.33475 1.30026 1.21171 0.83637 0.78928 0.85940 1.90670 1.24688 1.63875 1.60272 1.20271 1.00933 0.96066 0.93891 1.19056 1.00840 0.95157 1.02967 1.20292 0.95435 0.96446 0.97861 1.20297 1.03519 0.94857 1.07209 1.20669 0.98148 0.95620 0.98192 1.21286 0.95547 1.00233 1.00808 1.17334 0.90626 0.89957 0.89434 1.19498 1.16567 0.93488 1.18947 0.90756 1.25867 0.95761 0.95946 0.96429 1.69829 1.37098 1.03276 1.31988 0.86376 0.79345 0.79446 0.82252 1.18521 1.20075 1.19758 1.21390 1.00323 0.94261 0.95190 0.90976 1.21875 1.01727 0.99612 0.97330 0.92435 0.92929 0.91688 0.92102 0.92075 0.91517 0.92057 0.92139 0.90964 0.77385 0.88717 0.90806 0.89838 0.89736 0.89646 0.86599 0.91092 0.92377 0.92896 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.15 37.16 0.30 -1.17 16 2 C -0.08 -0.73 2.72 -90.62 -0.25 -0.98 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -1.05 5.45 -26.73 -0.15 -1.19 16 5 C -0.12 -1.32 5.65 -26.74 -0.15 -1.47 16 6 C -0.13 -1.80 5.49 -26.73 -0.15 -1.94 16 7 C 0.15 2.02 1.62 -67.93 -0.11 1.91 16 8 H 0.09 1.36 5.86 -51.93 -0.30 1.06 16 9 N -0.74 -10.78 4.38 -53.81 -0.24 -11.02 16 10 C 0.52 10.03 7.43 -10.99 -0.08 9.95 16 11 O -0.52 -12.49 15.70 5.56 0.09 -12.41 16 12 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 13 C -0.18 -4.35 4.43 -103.91 -0.46 -4.81 16 14 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 15 C -0.24 -5.68 10.05 -39.29 -0.39 -6.07 16 16 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 17 C -0.16 -4.33 8.68 -38.87 -0.34 -4.67 16 18 C 0.13 3.49 5.56 -106.83 -0.59 2.89 16 19 C -0.46 -12.10 8.14 -37.74 -0.31 -12.41 16 20 H 0.07 1.93 6.67 -52.48 -0.35 1.58 16 21 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 22 N -0.80 -20.79 10.97 55.55 0.61 -20.18 16 23 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 C -0.09 -0.92 2.07 -90.62 -0.19 -1.11 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 C -0.15 -1.41 8.68 37.16 0.32 -1.09 16 30 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.72 4.81 -51.93 -0.25 0.47 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.39 4.58 8.39 -40.82 -0.34 4.24 16 40 H 0.09 1.85 7.06 -51.93 -0.37 1.48 16 41 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 42 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 45 H 0.12 3.23 6.22 -52.48 -0.33 2.91 16 46 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 47 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -30.40 375.67 -10.42 -40.82 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.95 Total: 10.29 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -3.56 Total: -27.26 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.37 Total: -31.19 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.40 -10.42 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776779630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.317 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds