Wall clock time and date at job start Tue Mar 31 2020 10:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47061 * 2 1 4 4 C 1.52997 * 109.47122 * 239.99435 * 2 1 3 5 5 C 1.52996 * 109.47399 * 300.00166 * 4 2 1 6 6 C 1.52996 * 109.47212 * 300.00035 * 5 4 2 7 7 C 1.52999 * 109.47293 * 59.99873 * 6 5 4 8 8 H 1.09004 * 109.47310 * 59.99966 * 7 6 5 9 9 N 1.46496 * 109.47465 * 179.97438 * 7 6 5 10 10 C 1.34773 * 120.00577 * 275.00367 * 9 7 6 11 11 O 1.21283 * 119.99415 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00343 * 179.97438 * 10 9 7 13 13 C 1.50709 * 109.47092 * 179.97438 * 12 10 9 14 14 C 1.37635 * 120.12937 * 264.72661 * 13 12 10 15 15 C 1.38615 * 120.24657 * 179.72175 * 14 13 12 16 16 C 1.38654 * 120.50071 * 0.55616 * 15 14 13 17 17 C 1.37601 * 120.24810 * 359.72185 * 16 15 14 18 18 C 1.40698 * 120.12483 * 84.99878 * 13 12 10 19 19 C 1.41397 * 120.24632 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99788 * 334.09060 * 19 18 13 21 21 C 1.39946 * 120.00118 * 154.08944 * 19 18 13 22 22 N 1.30818 * 119.99829 * 343.61231 * 21 19 18 23 23 Si 1.86805 * 119.99971 * 163.61994 * 21 19 18 24 24 H 1.48501 * 109.47224 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46970 * 120.00032 * 23 21 19 26 26 H 1.48498 * 109.46580 * 239.99549 * 23 21 19 27 27 C 1.52996 * 109.46914 * 119.99753 * 2 1 3 28 28 H 1.09002 * 109.47678 * 180.02562 * 27 2 1 29 29 C 1.53007 * 109.47138 * 300.00103 * 27 2 1 30 30 H 1.08996 * 109.46837 * 300.00491 * 1 2 3 31 31 H 1.08998 * 109.46671 * 60.00149 * 1 2 3 32 32 H 1.08995 * 109.47061 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47008 * 60.00623 * 4 2 1 34 34 H 1.09002 * 109.46617 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47083 * 59.99980 * 5 4 2 36 36 H 1.09001 * 109.46687 * 180.02562 * 5 4 2 37 37 H 1.09002 * 109.47173 * 300.00383 * 6 5 4 38 38 H 1.09002 * 109.47428 * 180.02562 * 6 5 4 39 39 H 0.97004 * 119.99629 * 95.00022 * 9 7 6 40 40 H 1.08995 * 109.47018 * 299.99613 * 12 10 9 41 41 H 1.09000 * 109.47341 * 60.00292 * 12 10 9 42 42 H 1.08001 * 119.87506 * 359.97438 * 14 13 12 43 43 H 1.07995 * 119.74601 * 180.25404 * 15 14 13 44 44 H 1.08004 * 119.87266 * 179.74851 * 16 15 14 45 45 H 1.08005 * 120.12339 * 180.02562 * 17 16 15 46 46 H 0.96998 * 120.00020 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.46907 * 180.02562 * 29 27 2 48 48 H 1.08994 * 109.46832 * 299.99705 * 29 27 2 49 49 H 1.08996 * 109.47200 * 60.00028 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5301 -2.1638 -1.2491 6 6 2.0400 -2.8850 0.0002 7 6 1.5300 -2.1637 1.2494 8 1 0.4400 -2.1637 1.2494 9 7 2.0177 -2.8546 2.4456 10 6 1.3405 -3.9112 2.9369 11 8 0.3270 -4.2898 2.3888 12 6 1.8426 -4.6222 4.1670 13 6 0.9119 -5.7581 4.5058 14 6 -0.0924 -5.5763 5.4292 15 6 -0.9535 -6.6177 5.7384 16 6 -0.8071 -7.8557 5.1314 17 6 0.1934 -8.0617 4.2095 18 6 1.0698 -7.0100 3.8835 19 6 2.1013 -7.2100 2.9372 20 1 2.4915 -6.3720 2.3786 21 6 2.6165 -8.4936 2.7244 22 7 2.3914 -9.4417 3.5972 23 14 3.6257 -8.8531 1.1940 24 1 3.7341 -7.6212 0.3719 25 1 4.9833 -9.3048 1.5913 26 1 2.9612 -9.9193 0.4023 27 6 2.0400 -0.7212 1.2493 28 1 3.1300 -0.7209 1.2496 29 6 1.5299 0.0001 2.4985 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7217 -1.2488 35 1 0.4401 -2.1638 -1.2491 36 1 1.8938 -2.6778 -2.1388 37 1 3.1300 -2.8850 0.0003 38 1 1.6770 -3.9128 0.0000 39 1 2.8282 -2.5515 2.8841 40 1 2.8416 -5.0148 3.9774 41 1 1.8797 -3.9221 5.0017 42 1 -0.2126 -4.6176 5.9117 43 1 -1.7413 -6.4650 6.4611 44 1 -1.4812 -8.6612 5.3829 45 1 0.3053 -9.0267 3.7376 46 1 2.7482 -10.3315 3.4495 47 1 1.8936 -0.5134 3.3885 48 1 1.8933 1.0277 2.4985 49 1 0.4400 0.0002 2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776779630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:11 Heat of formation + Delta-G solvation = -67.769428 kcal Electronic energy + Delta-G solvation = -27180.491637 eV Core-core repulsion = 23683.777787 eV Total energy + Delta-G solvation = -3496.713850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -41.32859 -39.97774 -38.86781 -35.50275 -35.30350 -33.70748 -33.45208 -31.41499 -31.18036 -28.74395 -27.96841 -26.91661 -26.37935 -23.41979 -22.81979 -22.27162 -21.83281 -21.02190 -19.47607 -19.04269 -17.65406 -17.53908 -17.19474 -16.29358 -16.22689 -15.92341 -15.60955 -15.34730 -15.14774 -14.86523 -14.71772 -14.42389 -14.35888 -14.11348 -13.52087 -13.42433 -13.37632 -13.21163 -12.91562 -12.82842 -12.76234 -12.68682 -12.49345 -12.46841 -12.23387 -12.13295 -12.10451 -11.63269 -11.32982 -11.31367 -11.21413 -11.17173 -11.03552 -10.91186 -10.58625 -9.86531 -9.22551 -9.15330 -8.59948 -6.29049 0.98928 1.13472 1.33878 1.47123 1.50853 1.90133 2.18788 2.43078 2.78546 3.62400 3.76208 3.79294 3.91811 4.14145 4.17778 4.22240 4.39003 4.40218 4.42747 4.45076 4.52310 4.55874 4.62522 4.70343 4.73981 4.74916 4.81395 4.88436 4.95681 5.05759 5.06817 5.07944 5.15796 5.19232 5.20133 5.24692 5.29866 5.35667 5.36861 5.43271 5.49227 5.55176 5.65219 5.73947 5.78084 6.04297 6.17320 6.21534 6.42464 6.71422 6.78990 6.99755 7.11740 7.53146 8.36873 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.004265 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.818426 B = 6564.190117 C = 7991.812357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.078 4.078 3 H 0.095 0.905 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.130 4.130 7 C 0.152 3.848 8 H 0.060 0.940 9 N -0.720 5.720 10 C 0.518 3.482 11 O -0.576 6.576 12 C -0.071 4.071 13 C -0.186 4.186 14 C -0.092 4.092 15 C -0.242 4.242 16 C -0.118 4.118 17 C -0.194 4.194 18 C 0.096 3.904 19 C -0.481 4.481 20 H 0.069 0.931 21 C 0.037 3.963 22 N -0.826 5.826 23 Si 0.970 3.030 24 H -0.264 1.264 25 H -0.259 1.259 26 H -0.270 1.270 27 C -0.084 4.084 28 H 0.089 0.911 29 C -0.147 4.147 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.411 0.589 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.285 0.715 47 H 0.054 0.946 48 H 0.075 0.925 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 19.107 -6.172 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.097 4.097 3 H 0.113 0.887 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.168 4.168 7 C 0.047 3.953 8 H 0.078 0.922 9 N -0.372 5.372 10 C 0.306 3.694 11 O -0.454 6.454 12 C -0.110 4.110 13 C -0.187 4.187 14 C -0.110 4.110 15 C -0.261 4.261 16 C -0.137 4.137 17 C -0.214 4.214 18 C 0.094 3.906 19 C -0.511 4.511 20 H 0.087 0.913 21 C -0.177 4.177 22 N -0.453 5.453 23 Si 0.791 3.209 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.195 1.195 27 C -0.103 4.103 28 H 0.107 0.893 29 C -0.204 4.204 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.669 18.595 -6.494 20.035 hybrid contribution 0.371 -1.049 -0.312 1.156 sum 4.040 17.546 -6.806 19.249 Atomic orbital electron populations 1.22024 0.95913 1.01237 1.02196 1.21099 0.95515 0.99808 0.93250 0.88706 1.21579 1.01097 0.93938 0.98069 1.21518 1.00637 0.96824 0.96454 1.21900 1.01101 0.98200 0.95644 1.20997 0.98621 0.92022 0.83624 0.92155 1.45998 1.29468 1.31790 1.29992 1.21064 0.83138 0.79571 0.85654 1.90653 1.27236 1.65719 1.61776 1.20286 0.99664 0.95569 0.95487 1.19553 1.01486 0.95556 1.02137 1.20732 0.94868 0.97835 0.97605 1.20713 1.04054 0.94268 1.07092 1.20945 0.97900 0.97056 0.97753 1.21295 0.97396 0.99956 1.02712 1.17729 0.91164 0.91295 0.90431 1.19619 1.17408 0.94225 1.19830 0.91270 1.26639 0.96719 0.95364 0.99016 1.69884 1.38076 1.03827 1.33505 0.85349 0.78376 0.78948 0.78215 1.18792 1.18320 1.19458 1.21372 1.01176 0.91462 0.96277 0.89255 1.21873 1.01010 1.00814 0.96740 0.92236 0.91717 0.94155 0.90527 0.90908 0.92616 0.91671 0.91079 0.95628 0.75287 0.88715 0.87079 0.86599 0.86703 0.87718 0.88621 0.90399 0.92685 0.90649 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.15 71.98 0.59 -2.13 16 2 C -0.08 -1.17 2.72 -10.79 -0.03 -1.20 16 3 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.11 -1.68 5.45 30.59 0.17 -1.51 16 5 C -0.12 -2.53 5.65 30.59 0.17 -2.36 16 6 C -0.13 -3.56 5.49 30.59 0.17 -3.40 16 7 C 0.15 3.98 1.62 44.99 0.07 4.05 16 8 H 0.06 1.95 5.86 -2.38 -0.01 1.94 16 9 N -0.72 -20.44 4.38 -442.54 -1.94 -22.38 16 10 C 0.52 20.33 7.43 87.66 0.65 20.98 16 11 O -0.58 -28.71 15.70 -3.04 -0.05 -28.76 16 12 C -0.07 -2.75 5.18 29.10 0.15 -2.60 16 13 C -0.19 -9.14 4.43 -19.40 -0.09 -9.22 16 14 C -0.09 -4.25 9.66 22.22 0.21 -4.04 16 15 C -0.24 -11.30 10.05 22.46 0.23 -11.07 16 16 C -0.12 -5.98 10.02 22.22 0.22 -5.75 16 17 C -0.19 -11.01 8.68 22.73 0.20 -10.81 16 18 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 19 C -0.48 -26.60 8.14 23.46 0.19 -26.41 16 20 H 0.07 3.76 6.67 -2.91 -0.02 3.74 16 21 C 0.04 1.93 5.16 85.26 0.44 2.37 16 22 N -0.83 -44.65 10.97 21.83 0.24 -44.41 16 23 Si 0.97 40.09 29.59 68.60 2.03 42.12 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 27 C -0.08 -1.46 2.07 -10.79 -0.02 -1.48 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 C -0.15 -2.40 8.68 71.98 0.63 -1.77 16 30 H 0.06 1.00 6.43 -2.39 -0.02 0.98 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.90 4.81 -2.39 -0.01 0.89 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.33 6.43 -2.39 -0.02 1.31 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.41 8.73 8.39 -92.71 -0.78 7.95 16 40 H 0.09 3.69 7.06 -2.39 -0.02 3.67 16 41 H 0.11 3.43 8.05 -2.39 -0.02 3.41 16 42 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 43 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 44 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 45 H 0.10 5.67 6.22 -2.91 -0.02 5.65 16 46 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 47 H 0.05 0.92 7.45 -2.39 -0.02 0.91 16 48 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.05 0.89 6.43 -2.39 -0.02 0.87 16 Total: -1.00 -70.13 375.67 4.28 -65.85 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: 0.17 Total: 38.66 kcal Atomic # 6 Polarization: -54.91 SS G_CDS: 3.83 Total: -51.08 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -1.70 Total: -66.79 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -70.13 4.28 -65.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776779630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.919 kcal (2) G-P(sol) polarization free energy of solvation -70.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds