Wall clock time and date at job start Tue Mar 31 2020 10:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47159 * 240.00869 * 2 1 3 5 5 C 1.52992 * 109.47117 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47544 * 59.99554 * 5 4 2 7 7 C 1.52998 * 109.47025 * 300.00186 * 6 5 4 8 8 H 1.09000 * 109.47022 * 299.99366 * 7 6 5 9 9 N 1.46508 * 109.47116 * 179.97438 * 7 6 5 10 10 C 1.34769 * 119.99699 * 84.99697 * 9 7 6 11 11 O 1.21280 * 120.00494 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99945 * 180.02562 * 10 9 7 13 13 C 1.50693 * 109.47118 * 180.02562 * 12 10 9 14 14 C 1.37634 * 120.12981 * 264.99625 * 13 12 10 15 15 C 1.38610 * 120.25326 * 180.02562 * 14 13 12 16 16 C 1.38655 * 120.50139 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24879 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12829 * 85.25404 * 13 12 10 19 19 C 1.41391 * 120.24763 * 0.02562 * 18 13 12 20 20 H 1.08002 * 119.99657 * 334.26850 * 19 18 13 21 21 C 1.39944 * 120.00260 * 154.27292 * 19 18 13 22 22 N 1.30818 * 119.99816 * 343.66632 * 21 19 18 23 23 Si 1.86800 * 119.99967 * 163.67180 * 21 19 18 24 24 H 1.48500 * 109.47114 * 89.99804 * 23 21 19 25 25 H 1.48501 * 109.46960 * 209.99569 * 23 21 19 26 26 H 1.48498 * 109.47256 * 329.99404 * 23 21 19 27 27 C 1.52995 * 109.47334 * 120.00236 * 2 1 3 28 28 H 1.08997 * 109.47366 * 299.99817 * 27 2 1 29 29 C 1.53002 * 109.47070 * 60.00249 * 27 2 1 30 30 H 1.09003 * 109.46753 * 299.99126 * 1 2 3 31 31 H 1.09000 * 109.47134 * 59.99470 * 1 2 3 32 32 H 1.09000 * 109.46671 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46337 * 299.99680 * 4 2 1 34 34 H 1.08997 * 109.46857 * 59.99269 * 4 2 1 35 35 H 1.09007 * 109.47153 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.47327 * 299.99683 * 5 4 2 37 37 H 1.08996 * 109.47212 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.46703 * 59.99747 * 6 5 4 39 39 H 0.96999 * 119.99746 * 264.99914 * 9 7 6 40 40 H 1.08997 * 109.47190 * 59.99642 * 12 10 9 41 41 H 1.09004 * 109.46614 * 299.99921 * 12 10 9 42 42 H 1.08003 * 119.87616 * 0.02562 * 14 13 12 43 43 H 1.08007 * 119.75021 * 180.02562 * 15 14 13 44 44 H 1.08003 * 119.87889 * 180.02562 * 16 15 14 45 45 H 1.07995 * 120.12844 * 179.97438 * 17 16 15 46 46 H 0.97001 * 119.99886 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.47410 * 180.02562 * 29 27 2 48 48 H 1.08996 * 109.46965 * 299.99615 * 29 27 2 49 49 H 1.09007 * 109.46949 * 59.99865 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5700 -0.7205 -1.2497 6 6 4.0806 -1.4415 -0.0005 7 6 3.5706 -0.7203 1.2488 8 1 3.9336 0.3074 1.2486 9 7 4.0590 -1.4110 2.4449 10 6 5.2810 -1.1252 2.9363 11 8 5.9761 -0.2959 2.3886 12 6 5.7837 -1.8361 4.1664 13 6 7.1648 -1.3377 4.5054 14 6 8.2741 -2.0198 4.0599 15 6 9.5457 -1.5639 4.3706 16 6 9.7158 -0.4182 5.1327 17 6 8.6213 0.2798 5.5888 18 6 7.3254 -0.1762 5.2831 19 6 6.1932 0.5296 5.7514 20 1 5.2573 0.4650 5.2163 21 6 6.2853 1.3118 6.9081 22 7 7.2913 1.1502 7.7286 23 14 4.9718 2.5867 7.2806 24 1 3.8919 1.9636 8.0873 25 1 5.5740 3.7097 8.0430 26 1 4.4052 3.1002 6.0076 27 6 2.0400 -0.7213 1.2491 28 1 1.6768 -0.2075 2.1392 29 6 1.5301 -2.1638 1.2491 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6767 -1.7488 -1.2494 34 1 1.6766 -0.2072 -2.1392 35 1 3.9333 -1.2346 -2.1396 36 1 3.9329 0.3073 -1.2498 37 1 5.1705 -1.4414 -0.0010 38 1 3.7176 -2.4692 -0.0004 39 1 3.5029 -2.0741 2.8831 40 1 5.8205 -2.9087 3.9766 41 1 5.1112 -1.6376 5.0010 42 1 8.1534 -2.9137 3.4659 43 1 10.4106 -2.1053 4.0164 44 1 10.7113 -0.0717 5.3685 45 1 8.7560 1.1718 6.1826 46 1 7.3550 1.6921 8.5305 47 1 1.8931 -2.6776 2.1392 48 1 0.4402 -2.1638 1.2491 49 1 1.8935 -2.6776 0.3590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776779631.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:25 Heat of formation + Delta-G solvation = -51.457344 kcal Electronic energy + Delta-G solvation = -26954.141683 eV Core-core repulsion = 23458.135178 eV Total energy + Delta-G solvation = -3496.006505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.19181 -38.55753 -37.14824 -34.12372 -33.57029 -32.68367 -31.70953 -30.35209 -29.39161 -27.62093 -26.47387 -25.77769 -24.88857 -22.24539 -21.63944 -20.86917 -20.10048 -19.34761 -18.50787 -17.13349 -16.51724 -16.00602 -15.48032 -15.24555 -14.74808 -14.66340 -14.42619 -14.19169 -13.77522 -13.59609 -13.31482 -12.98813 -12.85900 -12.68500 -12.53434 -12.37652 -12.08763 -11.68949 -11.67037 -11.53035 -11.50484 -11.21634 -11.08900 -10.93322 -10.92131 -10.82064 -10.66357 -10.49573 -10.35530 -10.17932 -10.15466 -9.42994 -9.32515 -9.11530 -9.02571 -8.57770 -7.25716 -7.23169 -6.68992 -4.28876 2.83121 3.02833 3.09251 3.14792 3.31260 3.43759 3.72966 3.97433 4.51259 4.59090 4.67767 4.71659 4.99609 5.05965 5.17254 5.21850 5.32598 5.34951 5.49737 5.55956 5.57863 5.62139 5.69657 5.77310 5.83145 5.85829 5.89020 5.98558 5.99759 6.06894 6.12965 6.18597 6.21672 6.25623 6.33811 6.37072 6.48145 6.50856 6.56417 6.85838 6.96026 7.13724 7.35157 7.47904 7.69846 7.96179 8.05190 8.14228 8.18689 8.37134 8.70351 8.96690 8.98168 9.07245 10.25278 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003992 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.883104 B = 7013.050886 C = 8451.568076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.130 4.130 7 C 0.152 3.848 8 H 0.084 0.916 9 N -0.741 5.741 10 C 0.515 3.485 11 O -0.521 6.521 12 C -0.072 4.072 13 C -0.179 4.179 14 C -0.082 4.082 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.160 4.160 18 C 0.129 3.871 19 C -0.456 4.456 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.901 3.099 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.262 1.262 27 C -0.093 4.093 28 H 0.075 0.925 29 C -0.153 4.153 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.393 0.607 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.279 0.721 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.193 -4.915 -11.606 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.168 4.168 7 C 0.047 3.953 8 H 0.102 0.898 9 N -0.396 5.396 10 C 0.302 3.698 11 O -0.395 6.395 12 C -0.112 4.112 13 C -0.180 4.180 14 C -0.100 4.100 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.127 3.873 19 C -0.486 4.486 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.186 1.186 27 C -0.112 4.112 28 H 0.093 0.907 29 C -0.210 4.210 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.228 0.772 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.567 -4.207 -11.753 17.714 hybrid contribution -0.765 0.302 0.508 0.966 sum -13.332 -3.906 -11.246 17.874 Atomic orbital electron populations 1.21876 0.95203 1.01861 1.01553 1.21094 0.95397 0.99599 0.94298 0.91011 1.21651 0.95693 1.00745 0.97198 1.21486 0.95292 1.01117 0.97595 1.21946 1.01378 0.99411 0.94103 1.20820 0.92373 0.97476 0.84610 0.89798 1.46272 1.18714 1.44577 1.29994 1.21203 0.80302 0.82651 0.85619 1.90671 1.55908 1.32741 1.60153 1.20275 0.97605 0.98229 0.95075 1.19047 0.91146 0.98816 1.09030 1.20291 0.92883 0.98056 0.98785 1.20297 0.95320 1.01287 1.09018 1.20668 0.97080 0.96122 0.98728 1.21290 0.91817 1.01050 1.03758 1.17330 0.92907 0.88722 0.88370 1.19460 0.97487 1.24128 1.07505 0.90822 1.25866 0.96274 0.96418 0.95434 1.69820 1.28976 1.34180 1.09200 0.86427 0.81151 0.80578 0.79274 1.19568 1.20103 1.18572 1.21382 0.94431 0.96897 0.98513 0.90661 1.22002 1.00979 0.96050 1.01978 0.92698 0.92855 0.92379 0.91694 0.92216 0.92040 0.91822 0.91439 0.91836 0.77242 0.90776 0.88706 0.89840 0.89730 0.89640 0.86577 0.91027 0.92802 0.92326 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.84 37.16 0.33 -0.82 16 2 C -0.08 -0.78 2.49 -90.62 -0.23 -1.01 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -1.00 4.93 -26.73 -0.13 -1.13 16 5 C -0.12 -1.20 5.92 -26.74 -0.16 -1.36 16 6 C -0.13 -1.60 5.22 -26.73 -0.14 -1.74 16 7 C 0.15 2.04 2.15 -67.90 -0.15 1.89 16 8 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 9 N -0.74 -10.92 5.00 -53.77 -0.27 -11.19 16 10 C 0.51 10.12 7.45 -10.99 -0.08 10.04 16 11 O -0.52 -12.60 15.70 5.56 0.09 -12.51 16 12 C -0.07 -1.43 5.18 -29.03 -0.15 -1.58 16 13 C -0.18 -4.37 4.43 -103.92 -0.46 -4.83 16 14 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 15 C -0.24 -5.71 10.05 -39.29 -0.39 -6.10 16 16 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 17 C -0.16 -4.35 8.68 -38.87 -0.34 -4.69 16 18 C 0.13 3.51 5.56 -106.82 -0.59 2.91 16 19 C -0.46 -12.18 8.15 -37.74 -0.31 -12.49 16 20 H 0.07 1.92 6.68 -52.49 -0.35 1.57 16 21 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 22 N -0.80 -20.82 10.96 55.55 0.61 -20.21 16 23 Si 0.90 19.12 29.59 -169.99 -5.03 14.09 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 27 C -0.09 -0.96 2.41 -90.59 -0.22 -1.18 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 C -0.15 -1.31 7.98 37.16 0.30 -1.01 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 33 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 39 H 0.39 4.67 6.87 -40.82 -0.28 4.39 16 40 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 41 H 0.09 1.86 7.04 -51.93 -0.37 1.49 16 42 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.08 1.79 8.06 -52.48 -0.42 1.36 16 44 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 45 H 0.12 3.24 6.21 -52.49 -0.33 2.92 16 46 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 47 H 0.05 0.45 6.51 -51.93 -0.34 0.11 16 48 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 49 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -30.56 373.93 -10.40 -40.96 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -7.84 Total: 9.84 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -3.59 Total: -26.62 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.34 Total: -31.40 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.56 -10.40 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776779631.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.495 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds