Wall clock time and date at job start Tue Mar 31 2020 10:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47159 * 240.00869 * 2 1 3 5 5 C 1.52992 * 109.47117 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47544 * 59.99554 * 5 4 2 7 7 C 1.52998 * 109.47025 * 300.00186 * 6 5 4 8 8 H 1.09000 * 109.47022 * 299.99366 * 7 6 5 9 9 N 1.46508 * 109.47116 * 179.97438 * 7 6 5 10 10 C 1.34769 * 119.99699 * 84.99697 * 9 7 6 11 11 O 1.21280 * 120.00494 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99945 * 180.02562 * 10 9 7 13 13 C 1.50693 * 109.47118 * 180.02562 * 12 10 9 14 14 C 1.37634 * 120.12981 * 264.99625 * 13 12 10 15 15 C 1.38610 * 120.25326 * 180.02562 * 14 13 12 16 16 C 1.38655 * 120.50139 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24879 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12829 * 85.25404 * 13 12 10 19 19 C 1.41391 * 120.24763 * 0.02562 * 18 13 12 20 20 H 1.08002 * 119.99657 * 334.26850 * 19 18 13 21 21 C 1.39944 * 120.00260 * 154.27292 * 19 18 13 22 22 N 1.30818 * 119.99816 * 343.66632 * 21 19 18 23 23 Si 1.86800 * 119.99967 * 163.67180 * 21 19 18 24 24 H 1.48500 * 109.47114 * 89.99804 * 23 21 19 25 25 H 1.48501 * 109.46960 * 209.99569 * 23 21 19 26 26 H 1.48498 * 109.47256 * 329.99404 * 23 21 19 27 27 C 1.52995 * 109.47334 * 120.00236 * 2 1 3 28 28 H 1.08997 * 109.47366 * 299.99817 * 27 2 1 29 29 C 1.53002 * 109.47070 * 60.00249 * 27 2 1 30 30 H 1.09003 * 109.46753 * 299.99126 * 1 2 3 31 31 H 1.09000 * 109.47134 * 59.99470 * 1 2 3 32 32 H 1.09000 * 109.46671 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46337 * 299.99680 * 4 2 1 34 34 H 1.08997 * 109.46857 * 59.99269 * 4 2 1 35 35 H 1.09007 * 109.47153 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.47327 * 299.99683 * 5 4 2 37 37 H 1.08996 * 109.47212 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.46703 * 59.99747 * 6 5 4 39 39 H 0.96999 * 119.99746 * 264.99914 * 9 7 6 40 40 H 1.08997 * 109.47190 * 59.99642 * 12 10 9 41 41 H 1.09004 * 109.46614 * 299.99921 * 12 10 9 42 42 H 1.08003 * 119.87616 * 0.02562 * 14 13 12 43 43 H 1.08007 * 119.75021 * 180.02562 * 15 14 13 44 44 H 1.08003 * 119.87889 * 180.02562 * 16 15 14 45 45 H 1.07995 * 120.12844 * 179.97438 * 17 16 15 46 46 H 0.97001 * 119.99886 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.47410 * 180.02562 * 29 27 2 48 48 H 1.08996 * 109.46965 * 299.99615 * 29 27 2 49 49 H 1.09007 * 109.46949 * 59.99865 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5700 -0.7205 -1.2497 6 6 4.0806 -1.4415 -0.0005 7 6 3.5706 -0.7203 1.2488 8 1 3.9336 0.3074 1.2486 9 7 4.0590 -1.4110 2.4449 10 6 5.2810 -1.1252 2.9363 11 8 5.9761 -0.2959 2.3886 12 6 5.7837 -1.8361 4.1664 13 6 7.1648 -1.3377 4.5054 14 6 8.2741 -2.0198 4.0599 15 6 9.5457 -1.5639 4.3706 16 6 9.7158 -0.4182 5.1327 17 6 8.6213 0.2798 5.5888 18 6 7.3254 -0.1762 5.2831 19 6 6.1932 0.5296 5.7514 20 1 5.2573 0.4650 5.2163 21 6 6.2853 1.3118 6.9081 22 7 7.2913 1.1502 7.7286 23 14 4.9718 2.5867 7.2806 24 1 3.8919 1.9636 8.0873 25 1 5.5740 3.7097 8.0430 26 1 4.4052 3.1002 6.0076 27 6 2.0400 -0.7213 1.2491 28 1 1.6768 -0.2075 2.1392 29 6 1.5301 -2.1638 1.2491 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6767 -1.7488 -1.2494 34 1 1.6766 -0.2072 -2.1392 35 1 3.9333 -1.2346 -2.1396 36 1 3.9329 0.3073 -1.2498 37 1 5.1705 -1.4414 -0.0010 38 1 3.7176 -2.4692 -0.0004 39 1 3.5029 -2.0741 2.8831 40 1 5.8205 -2.9087 3.9766 41 1 5.1112 -1.6376 5.0010 42 1 8.1534 -2.9137 3.4659 43 1 10.4106 -2.1053 4.0164 44 1 10.7113 -0.0717 5.3685 45 1 8.7560 1.1718 6.1826 46 1 7.3550 1.6921 8.5305 47 1 1.8931 -2.6776 2.1392 48 1 0.4402 -2.1638 1.2491 49 1 1.8935 -2.6776 0.3590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776779631.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:22 Heat of formation + Delta-G solvation = -67.357176 kcal Electronic energy + Delta-G solvation = -26954.831151 eV Core-core repulsion = 23458.135178 eV Total energy + Delta-G solvation = -3496.695973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -41.34499 -40.00261 -38.88894 -35.50741 -35.37462 -33.63388 -33.34283 -31.48835 -31.27478 -28.80905 -27.84180 -26.85995 -26.49938 -23.27737 -22.83366 -22.66372 -21.55756 -20.95121 -19.43357 -19.05256 -17.90627 -17.38130 -17.04598 -16.39574 -16.24358 -16.10238 -15.65683 -15.38410 -15.29361 -14.95557 -14.62163 -14.41303 -14.34666 -13.88186 -13.54485 -13.43537 -13.37886 -13.17231 -12.90603 -12.77580 -12.76396 -12.68506 -12.51301 -12.48033 -12.25325 -12.14055 -12.09676 -11.57429 -11.33397 -11.31831 -11.21974 -11.10981 -11.02642 -10.99747 -10.62371 -9.89640 -9.22881 -9.15641 -8.60028 -6.29423 0.99556 1.13361 1.34038 1.45421 1.52581 1.88080 2.18975 2.40299 2.78466 3.66623 3.73770 3.76538 3.90358 4.14249 4.15661 4.20321 4.34254 4.40319 4.41730 4.43579 4.57599 4.57940 4.62252 4.71107 4.74302 4.76884 4.80696 4.85084 4.98535 5.04249 5.04943 5.08098 5.14243 5.17068 5.19818 5.23312 5.30849 5.36663 5.40400 5.44554 5.50320 5.54929 5.67650 5.71176 5.77606 6.03975 6.16797 6.21303 6.42156 6.70097 6.77253 6.99271 7.11408 7.50693 8.36612 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003992 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.883104 B = 7013.050886 C = 8451.568076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.054 0.946 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.123 4.123 7 C 0.150 3.850 8 H 0.044 0.956 9 N -0.720 5.720 10 C 0.516 3.484 11 O -0.576 6.576 12 C -0.071 4.071 13 C -0.186 4.186 14 C -0.092 4.092 15 C -0.243 4.243 16 C -0.118 4.118 17 C -0.195 4.195 18 C 0.096 3.904 19 C -0.483 4.483 20 H 0.069 0.931 21 C 0.037 3.963 22 N -0.826 5.826 23 Si 0.970 3.030 24 H -0.253 1.253 25 H -0.267 1.267 26 H -0.270 1.270 27 C -0.086 4.086 28 H 0.066 0.934 29 C -0.151 4.151 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.033 0.967 38 H 0.083 0.917 39 H 0.411 0.589 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.286 0.714 47 H 0.056 0.944 48 H 0.075 0.925 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.664 -6.679 -12.720 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.073 0.927 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.161 4.161 7 C 0.045 3.955 8 H 0.063 0.937 9 N -0.374 5.374 10 C 0.304 3.696 11 O -0.454 6.454 12 C -0.110 4.110 13 C -0.187 4.187 14 C -0.111 4.111 15 C -0.262 4.262 16 C -0.136 4.136 17 C -0.214 4.214 18 C 0.094 3.906 19 C -0.513 4.513 20 H 0.088 0.912 21 C -0.177 4.177 22 N -0.452 5.452 23 Si 0.791 3.209 24 H -0.178 1.178 25 H -0.192 1.192 26 H -0.194 1.194 27 C -0.105 4.105 28 H 0.085 0.915 29 C -0.208 4.208 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.248 0.752 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.079 -6.014 -12.864 20.713 hybrid contribution 0.071 0.790 0.796 1.124 sum -15.008 -5.224 -12.068 19.954 Atomic orbital electron populations 1.21837 0.93489 1.02790 1.01889 1.21101 0.96730 0.98623 0.94015 0.92701 1.21624 0.93909 1.01744 0.97326 1.21487 0.96891 0.99990 0.96989 1.21869 0.99225 1.00632 0.94411 1.20930 0.94727 0.95373 0.84455 0.93733 1.46069 1.17193 1.44143 1.30010 1.21122 0.81254 0.81898 0.85305 1.90653 1.57802 1.35155 1.61795 1.20294 0.95285 1.00246 0.95199 1.19538 0.93807 0.97845 1.07555 1.20733 0.92606 0.99050 0.98666 1.20714 0.96738 1.00766 1.07968 1.20945 0.97427 0.96521 0.98711 1.21306 0.93099 1.01496 1.05528 1.17728 0.93095 0.90140 0.89643 1.19604 0.97409 1.25878 1.08416 0.91242 1.26650 0.98480 0.97790 0.94823 1.69879 1.30578 1.35073 1.09715 0.85390 0.78687 0.78022 0.78765 1.17769 1.19162 1.19446 1.21336 0.91559 0.98717 0.98935 0.91524 1.22007 1.02106 0.94163 1.02480 0.93010 0.91985 0.91083 0.90112 0.90859 0.90686 0.93512 0.94853 0.89802 0.75185 0.87043 0.88620 0.86624 0.86692 0.87689 0.88560 0.90358 0.92466 0.90583 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.84 71.98 0.64 -1.18 16 2 C -0.09 -1.43 2.49 -10.79 -0.03 -1.46 16 3 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 4 C -0.11 -1.61 4.93 30.59 0.15 -1.46 16 5 C -0.12 -2.27 5.92 30.59 0.18 -2.08 16 6 C -0.12 -2.96 5.22 30.59 0.16 -2.80 16 7 C 0.15 4.02 2.15 45.01 0.10 4.12 16 8 H 0.04 1.56 7.58 -2.39 -0.02 1.54 16 9 N -0.72 -20.82 5.00 -442.44 -2.21 -23.04 16 10 C 0.52 20.50 7.45 87.66 0.65 21.15 16 11 O -0.58 -28.99 15.70 -3.03 -0.05 -29.04 16 12 C -0.07 -2.77 5.18 29.10 0.15 -2.62 16 13 C -0.19 -9.17 4.43 -19.41 -0.09 -9.26 16 14 C -0.09 -4.28 9.66 22.22 0.21 -4.07 16 15 C -0.24 -11.36 10.05 22.46 0.23 -11.14 16 16 C -0.12 -5.96 10.02 22.22 0.22 -5.74 16 17 C -0.19 -11.07 8.68 22.73 0.20 -10.87 16 18 C 0.10 5.41 5.56 -21.29 -0.12 5.29 16 19 C -0.48 -26.77 8.15 23.46 0.19 -26.58 16 20 H 0.07 3.76 6.68 -2.91 -0.02 3.74 16 21 C 0.04 1.93 5.16 85.26 0.44 2.37 16 22 N -0.83 -44.61 10.96 21.83 0.24 -44.37 16 23 Si 0.97 39.96 29.59 68.60 2.03 41.99 16 24 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 25 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 C -0.09 -1.66 2.41 -10.78 -0.03 -1.68 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 C -0.15 -2.08 7.98 71.98 0.57 -1.50 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.74 6.43 -2.39 -0.02 0.72 16 33 H 0.08 0.99 6.43 -2.38 -0.02 0.97 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.67 6.43 -2.39 -0.02 1.65 16 39 H 0.41 8.98 6.87 -92.71 -0.64 8.34 16 40 H 0.11 3.46 8.05 -2.39 -0.02 3.44 16 41 H 0.10 3.73 7.04 -2.38 -0.02 3.72 16 42 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 43 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 44 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 45 H 0.10 5.71 6.21 -2.91 -0.02 5.69 16 46 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 47 H 0.06 0.76 6.51 -2.39 -0.02 0.74 16 48 H 0.08 0.84 6.43 -2.39 -0.02 0.82 16 49 H 0.07 0.90 4.81 -2.38 -0.01 0.89 16 Total: -1.00 -70.26 373.93 4.16 -66.11 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.31 Total: 37.87 kcal Atomic # 6 Polarization: -53.35 SS G_CDS: 3.84 Total: -49.52 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -1.97 Total: -67.41 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.05 Total: -29.04 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -70.26 4.16 -66.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776779631.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.252 kcal (2) G-P(sol) polarization free energy of solvation -70.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds