Wall clock time and date at job start Tue Mar 31 2020 10:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46539 * 2 1 4 4 C 1.52997 * 109.47414 * 239.99554 * 2 1 3 5 5 C 1.53004 * 109.46895 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47385 * 59.99810 * 5 4 2 7 7 C 1.53001 * 109.46985 * 300.00186 * 6 5 4 8 8 H 1.08997 * 109.47369 * 299.99370 * 7 6 5 9 9 N 1.46507 * 109.47091 * 180.02562 * 7 6 5 10 10 C 1.34776 * 120.00179 * 84.99815 * 9 7 6 11 11 O 1.21278 * 119.99596 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00111 * 180.02562 * 10 9 7 13 13 C 1.50697 * 109.47209 * 179.97438 * 12 10 9 14 14 C 1.37639 * 120.12915 * 264.99947 * 13 12 10 15 15 C 1.38607 * 120.24764 * 180.02562 * 14 13 12 16 16 C 1.38653 * 120.50480 * 359.97438 * 15 14 13 17 17 C 1.37596 * 120.24760 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12815 * 85.01935 * 13 12 10 19 19 C 1.41393 * 120.24189 * 359.97438 * 18 13 12 20 20 H 1.08002 * 120.00485 * 334.03826 * 19 18 13 21 21 C 1.39945 * 119.99979 * 154.03743 * 19 18 13 22 22 N 1.30827 * 120.00100 * 343.67842 * 21 19 18 23 23 Si 1.86800 * 120.00403 * 163.67546 * 21 19 18 24 24 H 1.48500 * 109.47167 * 59.99851 * 23 21 19 25 25 H 1.48500 * 109.47488 * 180.02562 * 23 21 19 26 26 H 1.48511 * 109.47104 * 300.00223 * 23 21 19 27 27 C 1.52997 * 109.47386 * 60.00161 * 7 6 5 28 28 H 1.08997 * 109.47513 * 59.99297 * 27 7 6 29 29 C 1.53001 * 109.47386 * 179.97438 * 27 7 6 30 30 H 1.08998 * 109.46539 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47769 * 300.00532 * 1 2 3 32 32 H 1.08997 * 109.46878 * 60.00761 * 1 2 3 33 33 H 1.08996 * 109.46991 * 60.00376 * 4 2 1 34 34 H 1.08994 * 109.46992 * 299.99456 * 4 2 1 35 35 H 1.09002 * 109.46755 * 299.99737 * 5 4 2 36 36 H 1.08993 * 109.47251 * 179.97438 * 5 4 2 37 37 H 1.09001 * 109.47288 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.46931 * 59.99764 * 6 5 4 39 39 H 0.97005 * 119.99782 * 265.00126 * 9 7 6 40 40 H 1.09002 * 109.47139 * 59.99337 * 12 10 9 41 41 H 1.09007 * 109.46826 * 299.99994 * 12 10 9 42 42 H 1.08002 * 119.87241 * 0.02562 * 14 13 12 43 43 H 1.08011 * 119.74657 * 179.97438 * 15 14 13 44 44 H 1.08000 * 119.87706 * 179.72568 * 16 15 14 45 45 H 1.07994 * 120.12745 * 179.97438 * 17 16 15 46 46 H 0.97004 * 120.00060 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.46941 * 59.99410 * 29 27 7 48 48 H 1.09001 * 109.47301 * 179.97438 * 29 27 7 49 49 H 1.09003 * 109.46754 * 300.00016 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7218 -1.2487 6 6 4.0796 -1.4433 0.0006 7 6 3.5695 -0.7219 1.2498 8 1 3.9331 0.3056 1.2500 9 7 4.0578 -1.4124 2.4461 10 6 5.2797 -1.1264 2.9376 11 8 5.9752 -0.2978 2.3893 12 6 5.7823 -1.8370 4.1679 13 6 7.1639 -1.3395 4.5063 14 6 8.2726 -2.0226 4.0607 15 6 9.5445 -1.5675 4.3710 16 6 9.7156 -0.4209 5.1316 17 6 8.6217 0.2780 5.5877 18 6 7.3255 -0.1750 5.2793 19 6 6.1939 0.5350 5.7424 20 1 5.2598 0.4731 5.2038 21 6 6.2842 1.3181 6.8987 22 7 7.2866 1.1541 7.7232 23 14 4.9736 2.5978 7.2649 24 1 3.6516 1.9321 7.3849 25 1 5.2981 3.2883 8.5389 26 1 4.9294 3.5909 6.1616 27 6 2.0395 -0.7215 1.2494 28 1 1.6758 -1.7490 1.2492 29 6 1.5293 -0.0007 2.4989 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5137 -0.8900 33 1 1.6769 -0.2075 -2.1391 34 1 1.6769 -1.7490 -1.2490 35 1 3.9337 0.3058 -1.2486 36 1 3.9336 -1.2361 -2.1383 37 1 5.1696 -1.4440 0.0007 38 1 3.7159 -2.4708 0.0005 39 1 3.5017 -2.0754 2.8844 40 1 5.8190 -2.9098 3.9782 41 1 5.1096 -1.6385 5.0024 42 1 8.1510 -2.9167 3.4671 43 1 10.4089 -2.1101 4.0174 44 1 10.7113 -0.0779 5.3711 45 1 8.7572 1.1705 6.1804 46 1 7.3490 1.6967 8.5249 47 1 1.8930 1.0269 2.4995 48 1 0.4393 0.0000 2.4984 49 1 1.8923 -0.5151 3.3887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776779633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:40 Heat of formation + Delta-G solvation = -56.447676 kcal Electronic energy + Delta-G solvation = -26973.619241 eV Core-core repulsion = 23477.396339 eV Total energy + Delta-G solvation = -3496.222902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 4.60 seconds Orbital eigenvalues (eV) -39.99628 -38.45872 -37.13232 -34.10956 -33.56830 -33.12994 -31.74253 -30.37543 -29.39058 -27.41239 -26.47996 -25.53845 -24.85248 -21.91616 -21.12775 -20.86917 -20.23719 -19.95325 -19.06249 -17.12737 -16.39388 -15.89856 -15.33025 -14.87936 -14.74640 -14.63414 -14.39900 -14.25451 -14.03699 -13.57272 -13.15740 -13.11034 -12.80639 -12.56016 -12.51882 -12.19019 -11.91302 -11.82777 -11.67448 -11.56643 -11.51962 -11.16244 -11.09139 -10.94293 -10.93055 -10.91208 -10.64891 -10.53824 -10.36815 -10.35854 -10.09760 -9.43170 -9.32335 -9.11560 -9.02401 -8.56899 -7.25791 -7.23277 -6.68816 -4.29038 2.84396 3.02956 3.08516 3.12026 3.32033 3.43852 3.72075 3.97143 4.51890 4.60311 4.68689 4.71915 4.93004 5.05860 5.27570 5.31888 5.35884 5.39644 5.45129 5.55650 5.57737 5.67586 5.72231 5.82442 5.85224 5.86965 5.94703 5.98119 6.06184 6.10043 6.14572 6.17197 6.20828 6.30866 6.33475 6.35066 6.46385 6.50064 6.56249 6.85717 6.95777 7.13785 7.34970 7.47813 7.69750 7.96049 8.05133 8.14079 8.18489 8.37081 8.70188 8.96654 8.98169 9.07186 10.25490 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.004169 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.418534 B = 6714.414812 C = 8336.430793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.129 4.129 7 C 0.152 3.848 8 H 0.084 0.916 9 N -0.740 5.740 10 C 0.516 3.484 11 O -0.521 6.521 12 C -0.072 4.072 13 C -0.179 4.179 14 C -0.082 4.082 15 C -0.240 4.240 16 C -0.108 4.108 17 C -0.160 4.160 18 C 0.129 3.871 19 C -0.456 4.456 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.902 3.098 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.265 1.265 27 C -0.090 4.090 28 H 0.072 0.928 29 C -0.150 4.150 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.393 0.607 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.279 0.721 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.140 -4.260 -11.172 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.167 4.167 7 C 0.047 3.953 8 H 0.103 0.897 9 N -0.393 5.393 10 C 0.303 3.697 11 O -0.395 6.395 12 C -0.112 4.112 13 C -0.180 4.180 14 C -0.100 4.100 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.127 3.873 19 C -0.486 4.486 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.727 3.273 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.189 1.189 27 C -0.109 4.109 28 H 0.090 0.910 29 C -0.208 4.208 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.227 0.773 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.513 -3.552 -11.316 17.241 hybrid contribution -0.769 0.262 0.460 0.933 sum -13.281 -3.290 -10.856 17.466 Atomic orbital electron populations 1.21874 0.95197 1.01698 1.01704 1.21125 0.95418 0.99823 0.94023 0.90953 1.21617 0.95683 1.00516 0.97326 1.21492 0.95292 1.01127 0.97612 1.21923 1.01499 0.99144 0.94171 1.20856 0.92392 0.97577 0.84485 0.89745 1.46196 1.18688 1.44466 1.29989 1.21184 0.80252 0.82636 0.85617 1.90671 1.55862 1.32796 1.60144 1.20273 0.97584 0.98230 0.95077 1.19054 0.91149 0.98756 1.09080 1.20293 0.92889 0.98068 0.98778 1.20297 0.95320 1.01233 1.09058 1.20667 0.97086 0.96131 0.98730 1.21286 0.91826 1.01055 1.03729 1.17322 0.92889 0.88727 0.88349 1.19434 0.97621 1.24033 1.07521 0.90834 1.25864 0.96274 0.96427 0.95409 1.69816 1.29112 1.34147 1.09132 0.86472 0.81390 0.81226 0.78242 1.19100 1.20365 1.18924 1.21395 0.94326 0.99988 0.95210 0.91007 1.21894 1.00545 1.01014 0.97306 0.92816 0.92261 0.92873 0.92101 0.92068 0.91779 0.92010 0.91326 0.92203 0.77345 0.90788 0.88711 0.89844 0.89734 0.89641 0.86592 0.90972 0.92509 0.92503 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.84 37.16 0.33 -0.82 16 2 C -0.08 -0.78 2.25 -90.62 -0.20 -0.99 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.00 5.20 -26.73 -0.14 -1.14 16 5 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 6 C -0.13 -1.59 5.49 -26.73 -0.15 -1.74 16 7 C 0.15 2.02 1.90 -67.93 -0.13 1.89 16 8 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 9 N -0.74 -10.75 4.38 -53.80 -0.24 -10.98 16 10 C 0.52 10.04 7.43 -10.99 -0.08 9.96 16 11 O -0.52 -12.53 15.70 5.56 0.09 -12.44 16 12 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16 13 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 14 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 15 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16 16 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 17 C -0.16 -4.34 8.68 -38.87 -0.34 -4.68 16 18 C 0.13 3.51 5.56 -106.83 -0.59 2.91 16 19 C -0.46 -12.14 8.14 -37.74 -0.31 -12.44 16 20 H 0.07 1.90 6.68 -52.49 -0.35 1.55 16 21 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 22 N -0.80 -20.79 10.97 55.55 0.61 -20.18 16 23 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 27 C -0.09 -0.93 1.82 -90.62 -0.17 -1.09 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 C -0.15 -1.63 8.68 37.16 0.32 -1.31 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.39 4.57 8.39 -40.82 -0.34 4.23 16 40 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16 41 H 0.09 1.85 7.06 -51.93 -0.37 1.48 16 42 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16 44 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 45 H 0.12 3.23 6.22 -52.49 -0.33 2.91 16 46 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 49 H 0.06 0.69 7.44 -51.93 -0.39 0.30 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -30.37 382.70 -10.59 -40.97 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -8.31 Total: 9.61 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -3.49 Total: -26.81 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.37 Total: -31.17 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.37 -10.59 -40.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776779633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.479 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.60 seconds