Wall clock time and date at job start Tue Mar 31 2020 11:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46994 * 2 1 4 4 C 1.53001 * 109.47069 * 120.00426 * 2 1 3 5 5 H 1.09005 * 109.46999 * 299.99625 * 4 2 1 6 6 C 1.52997 * 109.46763 * 179.97438 * 4 2 1 7 7 N 1.46502 * 109.47232 * 60.00082 * 4 2 1 8 8 C 1.34781 * 119.99519 * 239.99953 * 7 4 2 9 9 O 1.21274 * 120.00210 * 5.12214 * 8 7 4 10 10 C 1.50702 * 119.99759 * 185.12311 * 8 7 4 11 11 C 1.50693 * 109.47107 * 187.89560 * 10 8 7 12 12 C 1.37641 * 120.12948 * 265.00074 * 11 10 8 13 13 C 1.38611 * 120.25131 * 180.02562 * 12 11 10 14 14 C 1.38655 * 120.50201 * 359.97438 * 13 12 11 15 15 C 1.37601 * 120.24649 * 0.02562 * 14 13 12 16 16 C 1.40697 * 120.12801 * 84.72556 * 11 10 8 17 17 C 1.41394 * 120.24528 * 359.97438 * 16 11 10 18 18 H 1.07998 * 119.99773 * 322.22089 * 17 16 11 19 19 C 1.39947 * 120.00268 * 142.21115 * 17 16 11 20 20 N 1.30817 * 120.00206 * 177.39409 * 19 17 16 21 21 Si 1.86802 * 119.99703 * 357.40011 * 19 17 16 22 22 H 1.48502 * 109.46867 * 91.14173 * 21 19 17 23 23 H 1.48498 * 109.47251 * 211.13984 * 21 19 17 24 24 H 1.48499 * 109.47250 * 331.14071 * 21 19 17 25 25 C 1.46495 * 120.00307 * 59.99591 * 7 4 2 26 26 C 1.53001 * 117.49879 * 130.69354 * 25 7 4 27 27 C 1.52995 * 60.00213 * 252.51631 * 26 25 7 28 28 H 1.09006 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47518 * 59.99797 * 1 2 3 30 30 H 1.09001 * 109.47178 * 299.99475 * 1 2 3 31 31 H 1.09005 * 109.46904 * 240.00109 * 2 1 3 32 32 H 1.09001 * 109.46729 * 60.00250 * 3 2 1 33 33 H 1.08997 * 109.46752 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47153 * 299.99877 * 3 2 1 35 35 H 1.09005 * 109.47419 * 60.00086 * 6 4 2 36 36 H 1.09004 * 109.47348 * 179.97438 * 6 4 2 37 37 H 1.09001 * 109.47367 * 300.00027 * 6 4 2 38 38 H 1.08998 * 109.46987 * 307.89745 * 10 8 7 39 39 H 1.09005 * 109.46550 * 67.89436 * 10 8 7 40 40 H 1.08006 * 119.87158 * 0.02562 * 12 11 10 41 41 H 1.08001 * 119.74778 * 179.97438 * 13 12 11 42 42 H 1.07996 * 119.88053 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.12939 * 179.97438 * 15 14 13 44 44 H 0.97000 * 119.99881 * 180.02562 * 20 19 17 45 45 H 1.09000 * 115.55215 * 276.40782 * 25 7 4 46 46 H 1.09009 * 117.49669 * 0.02562 * 26 25 7 47 47 H 1.08996 * 117.50047 * 145.02133 * 26 25 7 48 48 H 1.09002 * 117.49576 * 252.50846 * 27 26 25 49 49 H 1.09001 * 117.50259 * 107.49379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7219 1.2488 7 7 1.5517 -2.1026 1.2491 8 6 0.7768 -2.5434 2.2600 9 8 0.4071 -1.7734 3.1209 10 6 0.3699 -3.9932 2.3205 11 6 -0.6402 -4.1859 3.4220 12 6 -0.2303 -4.5898 4.6724 13 6 -1.1573 -4.7683 5.6873 14 6 -2.5057 -4.5423 5.4566 15 6 -2.9382 -4.1380 4.2144 16 6 -2.0053 -3.9480 3.1780 17 6 -2.4373 -3.5266 1.8993 18 1 -1.8366 -2.8351 1.3271 19 6 -3.6432 -4.0057 1.3750 20 7 -4.0681 -3.5770 0.2145 21 14 -4.6460 -5.2574 2.3327 22 1 -5.6203 -4.5502 3.2022 23 1 -5.3761 -6.1367 1.3845 24 1 -3.7391 -6.0803 3.1726 25 6 1.9055 -3.0046 0.1503 26 6 2.4524 -4.3854 0.5181 27 6 3.3886 -3.3197 -0.0552 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.3057 1.2487 36 1 3.9334 -1.2354 2.1390 37 1 3.9330 -1.2359 0.3588 38 1 -0.0709 -4.2869 1.3678 39 1 1.2472 -4.6087 2.5201 40 1 0.8176 -4.7683 4.8633 41 1 -0.8268 -5.0858 6.6652 42 1 -3.2194 -4.6849 6.2545 43 1 -3.9890 -3.9629 4.0367 44 1 -4.9041 -3.9088 -0.1487 45 1 1.2787 -2.9315 -0.7384 46 1 2.5485 -4.6228 1.5776 47 1 2.1851 -5.2211 -0.1286 48 1 3.7373 -3.4544 -1.0791 49 1 4.1010 -2.8559 0.6271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776810965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:32 Heat of formation + Delta-G solvation = 9.095306 kcal Electronic energy + Delta-G solvation = -27916.446997 eV Core-core repulsion = 24423.066252 eV Total energy + Delta-G solvation = -3493.380745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.16756 -38.04186 -36.85603 -36.14690 -33.46019 -32.20640 -31.81726 -30.31129 -29.98996 -27.31067 -26.48345 -24.83623 -23.34132 -22.69901 -22.25350 -21.32895 -20.39565 -19.25560 -18.65623 -17.28128 -16.33780 -16.24287 -15.71715 -15.36289 -14.64546 -14.31672 -14.24081 -14.17685 -13.77507 -13.58391 -13.33422 -13.09262 -13.00359 -12.58813 -12.24253 -12.10567 -12.07222 -11.97366 -11.83160 -11.70104 -11.28468 -11.05688 -10.94182 -10.83810 -10.76207 -10.75059 -10.58357 -10.52272 -10.27466 -10.20485 -10.05121 -9.63848 -9.48773 -9.08017 -9.03168 -8.27073 -7.52698 -7.41163 -6.76949 -4.42452 2.59267 2.74666 3.17297 3.23495 3.32946 3.35699 3.36869 3.75007 4.06334 4.59988 4.76411 4.84983 4.91237 4.95782 5.07466 5.21421 5.33290 5.42880 5.52373 5.55203 5.59864 5.66474 5.74602 5.82005 5.84860 5.93251 5.95715 5.98078 6.06678 6.07157 6.12430 6.16339 6.17988 6.22637 6.24507 6.36309 6.37253 6.51464 6.64861 6.72385 6.72871 6.98586 6.99838 7.28723 7.44650 7.68167 7.75306 7.88598 7.96214 8.18764 8.44406 8.72643 8.87854 8.90638 10.25199 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.004966 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.632711 B = 5637.065196 C = 6274.914411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C -0.145 4.145 4 C 0.145 3.855 5 H 0.097 0.903 6 C -0.172 4.172 7 N -0.592 5.592 8 C 0.527 3.473 9 O -0.525 6.525 10 C -0.074 4.074 11 C -0.156 4.156 12 C -0.074 4.074 13 C -0.230 4.230 14 C -0.087 4.087 15 C -0.221 4.221 16 C 0.106 3.894 17 C -0.447 4.447 18 H 0.089 0.911 19 C 0.083 3.917 20 N -0.826 5.826 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.295 1.295 24 H -0.240 1.240 25 C 0.076 3.924 26 C -0.182 4.182 27 C -0.193 4.193 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.281 0.719 45 H 0.115 0.885 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.346 1.544 -3.533 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.203 4.203 4 C 0.042 3.958 5 H 0.115 0.885 6 C -0.229 4.229 7 N -0.327 5.327 8 C 0.316 3.684 9 O -0.399 6.399 10 C -0.114 4.114 11 C -0.158 4.158 12 C -0.092 4.092 13 C -0.250 4.250 14 C -0.106 4.106 15 C -0.240 4.240 16 C 0.103 3.897 17 C -0.477 4.477 18 H 0.107 0.893 19 C -0.133 4.133 20 N -0.452 5.452 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.223 1.223 24 H -0.163 1.163 25 C -0.029 4.029 26 C -0.219 4.219 27 C -0.230 4.230 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.133 0.867 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.116 0.884 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.959 1.999 -3.277 13.515 hybrid contribution -0.698 -0.427 0.224 0.849 sum 12.260 1.571 -3.054 12.732 Atomic orbital electron populations 1.21758 0.94124 1.02937 1.01227 1.21406 0.96838 0.95764 0.97999 1.21868 1.00648 0.95938 1.01867 1.20997 0.93059 0.82347 0.99398 0.88510 1.22491 0.95940 1.02128 1.02364 1.47496 1.52044 1.10721 1.22425 1.21054 0.76133 0.91248 0.79922 1.90656 1.52829 1.57555 1.38861 1.20560 0.98007 0.91772 1.01029 1.19277 0.93800 1.08917 0.93823 1.20450 0.96984 0.98823 0.92951 1.20378 0.93341 1.13081 0.98163 1.20593 0.95164 0.98786 0.96018 1.21014 0.98320 1.10819 0.93854 1.17565 0.90772 0.88445 0.92940 1.19353 1.04152 1.23996 1.00170 0.89312 1.26031 0.96356 0.96158 0.94726 1.69611 1.20438 1.38167 1.17028 0.86457 0.79944 0.81228 0.79114 1.19982 1.22333 1.16308 1.21509 0.95826 0.92930 0.92654 1.23519 1.03034 0.92448 1.02892 1.23579 0.93363 1.03447 1.02639 0.91829 0.93275 0.92719 0.91251 0.92615 0.92600 0.92725 0.91773 0.92745 0.91140 0.88100 0.89949 0.89103 0.88921 0.88946 0.88503 0.90830 0.86749 0.87674 0.87640 0.88377 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.04 37.16 0.34 -1.95 16 2 C -0.10 -1.30 2.37 -90.62 -0.21 -1.52 16 3 C -0.15 -1.57 8.84 37.16 0.33 -1.24 16 4 C 0.15 2.06 2.22 -67.93 -0.15 1.91 16 5 H 0.10 1.65 6.91 -51.93 -0.36 1.29 16 6 C -0.17 -1.89 7.69 37.16 0.29 -1.61 16 7 N -0.59 -9.29 1.94 -158.58 -0.31 -9.60 16 8 C 0.53 10.50 7.17 -10.98 -0.08 10.42 16 9 O -0.52 -12.62 15.40 5.56 0.09 -12.53 16 10 C -0.07 -1.45 3.31 -29.04 -0.10 -1.55 16 11 C -0.16 -3.64 4.45 -103.92 -0.46 -4.10 16 12 C -0.07 -1.61 9.66 -39.66 -0.38 -1.99 16 13 C -0.23 -4.99 10.05 -39.29 -0.39 -5.38 16 14 C -0.09 -1.98 10.02 -39.66 -0.40 -2.38 16 15 C -0.22 -5.54 6.75 -38.87 -0.26 -5.80 16 16 C 0.11 2.72 5.09 -106.82 -0.54 2.18 16 17 C -0.45 -12.10 8.42 -37.74 -0.32 -12.42 16 18 H 0.09 2.55 7.32 -52.49 -0.38 2.17 16 19 C 0.08 2.21 5.51 -17.34 -0.10 2.11 16 20 N -0.83 -22.29 13.93 55.55 0.77 -21.52 16 21 Si 0.90 21.19 24.43 -169.99 -4.15 17.04 16 22 H -0.27 -6.32 6.84 56.52 0.39 -5.94 16 23 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.24 -5.69 6.30 56.52 0.36 -5.34 16 25 C 0.08 0.97 4.81 -67.93 -0.33 0.65 16 26 C -0.18 -2.03 8.53 -26.73 -0.23 -2.26 16 27 C -0.19 -1.89 8.67 -26.73 -0.23 -2.12 16 28 H 0.06 1.20 7.60 -51.93 -0.39 0.80 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.84 7.67 -51.93 -0.40 0.44 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 36 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.07 0.69 5.15 -51.93 -0.27 0.42 16 38 H 0.10 2.03 6.70 -51.93 -0.35 1.68 16 39 H 0.08 1.35 5.53 -51.93 -0.29 1.06 16 40 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.10 2.42 4.59 -52.49 -0.24 2.18 16 44 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 45 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.11 1.25 5.76 -51.92 -0.30 0.95 16 47 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.11 1.03 5.66 -51.93 -0.29 0.74 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -30.32 371.85 -9.02 -39.34 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.78 Total: 8.72 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -3.23 Total: -27.05 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.47 Total: -31.12 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.15 Total: 17.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.32 -9.02 -39.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776810965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.435 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds