Wall clock time and date at job start Tue Mar 31 2020 11:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46994 * 2 1 4 4 C 1.53001 * 109.47069 * 120.00426 * 2 1 3 5 5 H 1.09005 * 109.46999 * 299.99625 * 4 2 1 6 6 C 1.52997 * 109.46763 * 179.97438 * 4 2 1 7 7 N 1.46502 * 109.47232 * 60.00082 * 4 2 1 8 8 C 1.34781 * 119.99519 * 239.99953 * 7 4 2 9 9 O 1.21274 * 120.00210 * 5.12214 * 8 7 4 10 10 C 1.50702 * 119.99759 * 185.12311 * 8 7 4 11 11 C 1.50693 * 109.47107 * 187.89560 * 10 8 7 12 12 C 1.37641 * 120.12948 * 265.00074 * 11 10 8 13 13 C 1.38611 * 120.25131 * 180.02562 * 12 11 10 14 14 C 1.38655 * 120.50201 * 359.97438 * 13 12 11 15 15 C 1.37601 * 120.24649 * 0.02562 * 14 13 12 16 16 C 1.40697 * 120.12801 * 84.72556 * 11 10 8 17 17 C 1.41394 * 120.24528 * 359.97438 * 16 11 10 18 18 H 1.07998 * 119.99773 * 322.22089 * 17 16 11 19 19 C 1.39947 * 120.00268 * 142.21115 * 17 16 11 20 20 N 1.30817 * 120.00206 * 177.39409 * 19 17 16 21 21 Si 1.86802 * 119.99703 * 357.40011 * 19 17 16 22 22 H 1.48502 * 109.46867 * 91.14173 * 21 19 17 23 23 H 1.48498 * 109.47251 * 211.13984 * 21 19 17 24 24 H 1.48499 * 109.47250 * 331.14071 * 21 19 17 25 25 C 1.46495 * 120.00307 * 59.99591 * 7 4 2 26 26 C 1.53001 * 117.49879 * 130.69354 * 25 7 4 27 27 C 1.52995 * 60.00213 * 252.51631 * 26 25 7 28 28 H 1.09006 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47518 * 59.99797 * 1 2 3 30 30 H 1.09001 * 109.47178 * 299.99475 * 1 2 3 31 31 H 1.09005 * 109.46904 * 240.00109 * 2 1 3 32 32 H 1.09001 * 109.46729 * 60.00250 * 3 2 1 33 33 H 1.08997 * 109.46752 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47153 * 299.99877 * 3 2 1 35 35 H 1.09005 * 109.47419 * 60.00086 * 6 4 2 36 36 H 1.09004 * 109.47348 * 179.97438 * 6 4 2 37 37 H 1.09001 * 109.47367 * 300.00027 * 6 4 2 38 38 H 1.08998 * 109.46987 * 307.89745 * 10 8 7 39 39 H 1.09005 * 109.46550 * 67.89436 * 10 8 7 40 40 H 1.08006 * 119.87158 * 0.02562 * 12 11 10 41 41 H 1.08001 * 119.74778 * 179.97438 * 13 12 11 42 42 H 1.07996 * 119.88053 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.12939 * 179.97438 * 15 14 13 44 44 H 0.97000 * 119.99881 * 180.02562 * 20 19 17 45 45 H 1.09000 * 115.55215 * 276.40782 * 25 7 4 46 46 H 1.09009 * 117.49669 * 0.02562 * 26 25 7 47 47 H 1.08996 * 117.50047 * 145.02133 * 26 25 7 48 48 H 1.09002 * 117.49576 * 252.50846 * 27 26 25 49 49 H 1.09001 * 117.50259 * 107.49379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7219 1.2488 7 7 1.5517 -2.1026 1.2491 8 6 0.7768 -2.5434 2.2600 9 8 0.4071 -1.7734 3.1209 10 6 0.3699 -3.9932 2.3205 11 6 -0.6402 -4.1859 3.4220 12 6 -0.2303 -4.5898 4.6724 13 6 -1.1573 -4.7683 5.6873 14 6 -2.5057 -4.5423 5.4566 15 6 -2.9382 -4.1380 4.2144 16 6 -2.0053 -3.9480 3.1780 17 6 -2.4373 -3.5266 1.8993 18 1 -1.8366 -2.8351 1.3271 19 6 -3.6432 -4.0057 1.3750 20 7 -4.0681 -3.5770 0.2145 21 14 -4.6460 -5.2574 2.3327 22 1 -5.6203 -4.5502 3.2022 23 1 -5.3761 -6.1367 1.3845 24 1 -3.7391 -6.0803 3.1726 25 6 1.9055 -3.0046 0.1503 26 6 2.4524 -4.3854 0.5181 27 6 3.3886 -3.3197 -0.0552 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.3057 1.2487 36 1 3.9334 -1.2354 2.1390 37 1 3.9330 -1.2359 0.3588 38 1 -0.0709 -4.2869 1.3678 39 1 1.2472 -4.6087 2.5201 40 1 0.8176 -4.7683 4.8633 41 1 -0.8268 -5.0858 6.6652 42 1 -3.2194 -4.6849 6.2545 43 1 -3.9890 -3.9629 4.0367 44 1 -4.9041 -3.9088 -0.1487 45 1 1.2787 -2.9315 -0.7384 46 1 2.5485 -4.6228 1.5776 47 1 2.1851 -5.2211 -0.1286 48 1 3.7373 -3.4544 -1.0791 49 1 4.1010 -2.8559 0.6271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776810965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:31 Heat of formation + Delta-G solvation = -6.607830 kcal Electronic energy + Delta-G solvation = -27917.127936 eV Core-core repulsion = 24423.066252 eV Total energy + Delta-G solvation = -3494.061684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51432 -39.72266 -38.33441 -37.20757 -35.42089 -33.52670 -33.40752 -32.20356 -31.16034 -28.82608 -27.73051 -26.70244 -24.47636 -23.92727 -23.27949 -23.04123 -21.92236 -20.71561 -19.87553 -19.24303 -17.78715 -17.66122 -17.24621 -16.70346 -16.27761 -15.89229 -15.57960 -15.50479 -15.36284 -14.92065 -14.66929 -14.62628 -14.30419 -14.12880 -13.85529 -13.71427 -13.34059 -13.18658 -13.09956 -12.94446 -12.83615 -12.70948 -12.48954 -12.31528 -12.09323 -11.96110 -11.91182 -11.77438 -11.60538 -11.54144 -11.40283 -11.27301 -11.14929 -10.96360 -10.55749 -9.54663 -9.36537 -9.25860 -8.76038 -6.46606 0.78658 0.88341 1.26546 1.37635 1.47229 1.78671 2.09106 2.14571 2.68883 2.82139 3.42492 3.66336 3.82813 3.95667 3.97522 4.02491 4.11430 4.16397 4.22544 4.36391 4.40956 4.46931 4.49523 4.56414 4.61878 4.67717 4.71832 4.79632 4.83951 4.90537 4.91768 4.95722 5.00121 5.01033 5.08765 5.11688 5.14942 5.19391 5.26699 5.30931 5.39608 5.41641 5.44703 5.64617 5.77773 5.84539 5.92711 6.03742 6.29846 6.44010 6.52531 6.80256 6.90406 7.38075 8.31182 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.004966 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.632711 B = 5637.065196 C = 6274.914411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.140 4.140 4 C 0.139 3.861 5 H 0.060 0.940 6 C -0.160 4.160 7 N -0.581 5.581 8 C 0.522 3.478 9 O -0.580 6.580 10 C -0.068 4.068 11 C -0.163 4.163 12 C -0.084 4.084 13 C -0.216 4.216 14 C -0.098 4.098 15 C -0.242 4.242 16 C 0.077 3.923 17 C -0.467 4.467 18 H 0.050 0.950 19 C 0.045 3.955 20 N -0.867 5.867 21 Si 0.960 3.040 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.243 1.243 25 C 0.040 3.960 26 C -0.183 4.183 27 C -0.156 4.156 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.287 0.713 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.119 0.881 48 H 0.126 0.874 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.349 0.343 -2.994 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.198 4.198 4 C 0.036 3.964 5 H 0.078 0.922 6 C -0.218 4.218 7 N -0.314 5.314 8 C 0.312 3.688 9 O -0.459 6.459 10 C -0.107 4.107 11 C -0.165 4.165 12 C -0.102 4.102 13 C -0.235 4.235 14 C -0.116 4.116 15 C -0.261 4.261 16 C 0.074 3.926 17 C -0.498 4.498 18 H 0.069 0.931 19 C -0.167 4.167 20 N -0.496 5.496 21 Si 0.785 3.215 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.167 1.167 25 C -0.064 4.064 26 C -0.220 4.220 27 C -0.193 4.193 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.124 0.876 46 H 0.117 0.883 47 H 0.137 0.863 48 H 0.144 0.856 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.998 0.793 -2.777 16.257 hybrid contribution -1.504 -0.034 0.157 1.513 sum 14.494 0.759 -2.621 14.748 Atomic orbital electron populations 1.21702 0.97124 1.00118 1.00574 1.21374 0.94018 0.97699 0.98030 1.21840 1.02218 0.93784 1.01939 1.21156 0.95574 0.81264 0.98409 0.92151 1.22420 0.92524 1.03755 1.03077 1.47454 1.50396 1.11805 1.21703 1.21091 0.76275 0.91037 0.80398 1.90618 1.55258 1.58651 1.41414 1.20549 0.98422 0.92435 0.99335 1.19747 0.93600 1.07475 0.95672 1.20898 0.99000 0.98033 0.92262 1.20928 0.92775 1.10149 0.99633 1.20988 0.96645 0.98174 0.95770 1.21161 0.98061 1.11921 0.94962 1.17783 0.92482 0.89633 0.92654 1.19205 1.04756 1.24853 1.01011 0.93141 1.26654 0.97040 0.97581 0.95389 1.69663 1.21466 1.40101 1.18366 0.85606 0.78564 0.79271 0.78050 1.19636 1.21010 1.16698 1.21692 0.98745 0.94208 0.91744 1.23586 1.03232 0.92215 1.02988 1.23670 0.90838 1.00580 1.04218 0.95701 0.91823 0.95364 0.89486 0.93692 0.89960 0.91594 0.89775 0.93213 0.89089 0.89406 0.86471 0.85761 0.85075 0.85789 0.89184 0.90246 0.87550 0.88269 0.86323 0.85578 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.04 71.98 0.65 -4.11 16 2 C -0.09 -2.37 2.37 -10.79 -0.03 -2.40 16 3 C -0.14 -2.80 8.84 71.98 0.64 -2.17 16 4 C 0.14 3.97 2.22 44.99 0.10 4.07 16 5 H 0.06 2.19 6.91 -2.38 -0.02 2.17 16 6 C -0.16 -3.14 7.69 71.98 0.55 -2.59 16 7 N -0.58 -18.72 1.94 -774.03 -1.50 -20.22 16 8 C 0.52 21.79 7.17 87.66 0.63 22.42 16 9 O -0.58 -29.65 15.40 -3.01 -0.05 -29.70 16 10 C -0.07 -2.73 3.31 29.10 0.10 -2.64 16 11 C -0.16 -7.68 4.45 -19.41 -0.09 -7.76 16 12 C -0.08 -3.49 9.66 22.22 0.21 -3.28 16 13 C -0.22 -8.68 10.05 22.46 0.23 -8.46 16 14 C -0.10 -4.25 10.02 22.22 0.22 -4.03 16 15 C -0.24 -12.23 6.75 22.73 0.15 -12.08 16 16 C 0.08 4.10 5.09 -21.29 -0.11 3.99 16 17 C -0.47 -27.08 8.42 23.46 0.20 -26.88 16 18 H 0.05 3.21 7.32 -2.91 -0.02 3.19 16 19 C 0.04 2.49 5.51 85.26 0.47 2.96 16 20 N -0.87 -49.57 13.93 21.83 0.30 -49.26 16 21 Si 0.96 45.03 24.43 68.60 1.68 46.70 16 22 H -0.27 -12.37 6.84 99.48 0.68 -11.69 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.24 -11.42 6.30 99.48 0.63 -10.80 16 25 C 0.04 1.01 4.81 44.99 0.22 1.22 16 26 C -0.18 -3.74 8.53 30.59 0.26 -3.48 16 27 C -0.16 -2.52 8.67 30.59 0.27 -2.26 16 28 H 0.02 1.02 7.60 -2.38 -0.02 1.00 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.97 7.67 -2.38 -0.02 1.95 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.23 6.43 -2.39 -0.02 1.22 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.34 6.43 -2.38 -0.02 1.32 16 36 H 0.05 1.04 8.09 -2.38 -0.02 1.02 16 37 H 0.09 1.41 5.15 -2.39 -0.01 1.40 16 38 H 0.09 3.73 6.70 -2.39 -0.02 3.72 16 39 H 0.12 3.73 5.53 -2.38 -0.01 3.71 16 40 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 43 H 0.09 4.57 4.59 -2.91 -0.01 4.56 16 44 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 45 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 46 H 0.10 2.15 5.76 -2.38 -0.01 2.14 16 47 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.11 1.73 5.66 -2.39 -0.01 1.71 16 Total: -1.00 -72.34 371.85 5.94 -66.41 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.83 Total: 33.52 kcal Atomic # 6 Polarization: -52.12 SS G_CDS: 4.67 Total: -47.45 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -1.19 Total: -69.48 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.68 Total: 46.70 kcal Total: -72.34 5.94 -66.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776810965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.798 kcal (2) G-P(sol) polarization free energy of solvation -72.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds