Wall clock time and date at job start Tue Mar 31 2020 10:43:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.47572 * 2 1
4 4 C 1.53002 * 109.46912 * 239.99947 * 2 1 3
5 5 C 1.53002 * 109.46871 * 180.02562 * 4 2 1
6 6 C 1.52991 * 109.47424 * 59.99850 * 5 4 2
7 7 H 1.09000 * 109.47237 * 180.02562 * 6 5 4
8 8 N 1.46508 * 109.47251 * 59.99896 * 6 5 4
9 9 C 1.34780 * 119.99838 * 84.99961 * 8 6 5
10 10 O 1.21281 * 120.00110 * 0.02562 * 9 8 6
11 11 C 1.50694 * 119.99740 * 179.97438 * 9 8 6
12 12 C 1.50699 * 109.46989 * 179.97438 * 11 9 8
13 13 C 1.37641 * 120.13208 * 265.00352 * 12 11 9
14 14 C 1.38608 * 120.24985 * 179.97438 * 13 12 11
15 15 C 1.38650 * 120.50357 * 359.97438 * 14 13 12
16 16 C 1.37593 * 120.24929 * 0.02647 * 15 14 13
17 17 C 1.40698 * 120.12927 * 84.98062 * 12 11 9
18 18 C 1.41396 * 120.24121 * 0.02562 * 17 12 11
19 19 H 1.08001 * 120.00184 * 334.08199 * 18 17 12
20 20 C 1.39947 * 120.00313 * 154.08624 * 18 17 12
21 21 N 1.30829 * 119.99807 * 343.62734 * 20 18 17
22 22 Si 1.86794 * 120.00288 * 163.62300 * 20 18 17
23 23 H 1.48503 * 109.47287 * 60.00132 * 22 20 18
24 24 H 1.48497 * 109.47371 * 179.97438 * 22 20 18
25 25 H 1.48504 * 109.47485 * 300.00405 * 22 20 18
26 26 C 1.53002 * 109.47219 * 299.99937 * 6 5 4
27 27 H 1.09004 * 109.47045 * 299.99881 * 26 6 5
28 28 C 1.53004 * 109.47032 * 179.97438 * 26 6 5
29 29 C 1.52998 * 109.46912 * 60.00257 * 26 6 5
30 30 H 1.09004 * 109.47572 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47093 * 300.00360 * 1 2 3
32 32 H 1.09005 * 109.46992 * 60.00022 * 1 2 3
33 33 H 1.08992 * 109.47530 * 60.00041 * 4 2 1
34 34 H 1.09004 * 109.47189 * 299.99841 * 4 2 1
35 35 H 1.08999 * 109.46737 * 299.99184 * 5 4 2
36 36 H 1.09000 * 109.46608 * 179.97438 * 5 4 2
37 37 H 0.96995 * 119.99949 * 264.99990 * 8 6 5
38 38 H 1.08995 * 109.47127 * 60.00317 * 11 9 8
39 39 H 1.08998 * 109.47581 * 299.99725 * 11 9 8
40 40 H 1.08002 * 119.87128 * 359.97438 * 13 12 11
41 41 H 1.08004 * 119.74686 * 179.97438 * 14 13 12
42 42 H 1.08001 * 119.87484 * 179.74355 * 15 14 13
43 43 H 1.08006 * 120.12806 * 179.97438 * 16 15 14
44 44 H 0.96995 * 119.99565 * 179.97438 * 21 20 18
45 45 H 1.09005 * 109.46811 * 60.00432 * 28 26 6
46 46 H 1.09003 * 109.46690 * 180.02562 * 28 26 6
47 47 H 1.08990 * 109.47340 * 299.99827 * 28 26 6
48 48 H 1.09003 * 109.47093 * 180.02562 * 29 26 6
49 49 H 1.08995 * 109.47474 * 59.99655 * 29 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 3.5699 -0.7218 -1.2489
6 6 4.0795 -1.4434 0.0002
7 1 5.1695 -1.4433 0.0007
8 7 3.5906 -2.8245 0.0000
9 6 4.2673 -3.7787 -0.6694
10 8 5.2810 -3.4941 -1.2713
11 6 3.7648 -5.1994 -0.6692
12 6 4.6940 -6.0610 -1.4847
13 6 4.4190 -6.3120 -2.8098
14 6 5.2723 -7.1037 -3.5623
15 6 6.4111 -7.6511 -2.9913
16 6 6.7060 -7.4136 -1.6685
17 6 5.8465 -6.6117 -0.8946
18 6 6.1393 -6.3609 0.4658
19 1 5.7685 -5.4651 0.9417
20 6 6.9097 -7.2733 1.1956
21 7 7.0899 -8.4871 0.7421
22 14 7.6807 -6.7579 2.8170
23 1 6.6131 -6.3505 3.7655
24 1 8.4408 -7.8985 3.3884
25 1 8.6006 -5.6151 2.5867
26 6 3.5695 -0.7221 1.2495
27 1 3.9332 0.3055 1.2497
28 6 4.0786 -1.4441 2.4988
29 6 2.0395 -0.7216 1.2493
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.6766 -0.2075 -2.1392
34 1 1.6766 -1.7490 -1.2492
35 1 3.9336 0.3057 -1.2489
36 1 3.9332 -1.2361 -2.1387
37 1 2.7801 -3.0521 0.4817
38 1 2.7655 -5.2314 -1.1033
39 1 3.7282 -5.5717 0.3546
40 1 3.5349 -5.8904 -3.2648
41 1 5.0484 -7.2957 -4.6012
42 1 7.0668 -8.2699 -3.5860
43 1 7.5934 -7.8413 -1.2257
44 1 7.6241 -9.1194 1.2478
45 1 5.1686 -1.4447 2.4991
46 1 3.7149 -0.9304 3.3887
47 1 3.7145 -2.4714 2.4984
48 1 1.6762 -0.2074 2.1390
49 1 1.6759 -1.7491 1.2490
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000776921353.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:43:19
Heat of formation + Delta-G solvation = -55.192238 kcal
Electronic energy + Delta-G solvation = -27192.607764 eV
Core-core repulsion = 23696.439302 eV
Total energy + Delta-G solvation = -3496.168462 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.16755 -38.34063 -37.05910 -34.23762 -33.56613 -32.54733 -31.79037 -30.73936
-29.39131 -27.01395 -26.75153 -25.71700 -24.82777 -22.19843 -20.98124 -20.83316
-20.71134 -19.32544 -18.89724 -17.13527 -16.58633 -15.75376 -15.41340 -15.15649
-14.72095 -14.50284 -14.29362 -14.02804 -13.86197 -13.62497 -13.26784 -13.04179
-12.89439 -12.55971 -12.52104 -12.39017 -11.96028 -11.85827 -11.70397 -11.52644
-11.40202 -11.29942 -11.10827 -10.95459 -10.94256 -10.91296 -10.64030 -10.56437
-10.36163 -10.24415 -10.01096 -9.42940 -9.32028 -9.11278 -9.03157 -8.54981
-7.25534 -7.23043 -6.68615 -4.28748 2.84735 3.03576 3.08753 3.12272
3.32304 3.45489 3.79125 3.97387 4.52960 4.56915 4.63279 4.71453
4.91561 5.08946 5.21825 5.27454 5.38093 5.45134 5.51014 5.53284
5.61887 5.64444 5.71566 5.80171 5.85528 5.87271 5.92159 6.02027
6.05404 6.07461 6.14307 6.16418 6.27293 6.31006 6.33390 6.36058
6.40732 6.49614 6.56436 6.85937 6.98540 7.14067 7.35180 7.48050
7.70019 7.96529 8.06139 8.14642 8.18752 8.37322 8.70458 8.97126
8.99625 9.07455 10.25730
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013666 B = 0.004293 C = 0.003490
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2048.329839 B = 6520.946552 C = 8021.022716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.092 4.092
3 H 0.067 0.933
4 C -0.111 4.111
5 C -0.130 4.130
6 C 0.152 3.848
7 H 0.085 0.915
8 N -0.735 5.735
9 C 0.515 3.485
10 O -0.522 6.522
11 C -0.072 4.072
12 C -0.178 4.178
13 C -0.082 4.082
14 C -0.240 4.240
15 C -0.108 4.108
16 C -0.160 4.160
17 C 0.130 3.870
18 C -0.456 4.456
19 H 0.074 0.926
20 C 0.077 3.923
21 N -0.797 5.797
22 Si 0.902 3.098
23 H -0.266 1.266
24 H -0.279 1.279
25 H -0.265 1.265
26 C -0.097 4.097
27 H 0.078 0.922
28 C -0.148 4.148
29 C -0.109 4.109
30 H 0.054 0.946
31 H 0.052 0.948
32 H 0.052 0.948
33 H 0.057 0.943
34 H 0.064 0.936
35 H 0.064 0.936
36 H 0.069 0.931
37 H 0.392 0.608
38 H 0.073 0.927
39 H 0.094 0.906
40 H 0.083 0.917
41 H 0.084 0.916
42 H 0.085 0.915
43 H 0.116 0.884
44 H 0.279 0.721
45 H 0.057 0.943
46 H 0.052 0.948
47 H 0.059 0.941
48 H 0.062 0.938
49 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.561 13.812 3.313 17.700
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.111 4.111
3 H 0.086 0.914
4 C -0.149 4.149
5 C -0.169 4.169
6 C 0.047 3.953
7 H 0.103 0.897
8 N -0.390 5.390
9 C 0.303 3.697
10 O -0.396 6.396
11 C -0.112 4.112
12 C -0.180 4.180
13 C -0.100 4.100
14 C -0.259 4.259
15 C -0.126 4.126
16 C -0.179 4.179
17 C 0.127 3.873
18 C -0.486 4.486
19 H 0.092 0.908
20 C -0.140 4.140
21 N -0.422 5.422
22 Si 0.727 3.273
23 H -0.191 1.191
24 H -0.204 1.204
25 H -0.189 1.189
26 C -0.116 4.116
27 H 0.097 0.903
28 C -0.205 4.205
29 C -0.147 4.147
30 H 0.073 0.927
31 H 0.071 0.929
32 H 0.071 0.929
33 H 0.076 0.924
34 H 0.083 0.917
35 H 0.083 0.917
36 H 0.088 0.912
37 H 0.227 0.773
38 H 0.091 0.909
39 H 0.112 0.888
40 H 0.101 0.899
41 H 0.103 0.897
42 H 0.103 0.897
43 H 0.134 0.866
44 H 0.090 0.910
45 H 0.076 0.924
46 H 0.071 0.929
47 H 0.078 0.922
48 H 0.081 0.919
49 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -9.688 13.770 2.938 17.091
hybrid contribution 0.015 0.046 0.945 0.947
sum -9.672 13.815 3.883 17.306
Atomic orbital electron populations
1.21830 0.95444 1.01817 1.01342 1.21153 0.95191 0.99537 0.95173
0.91411 1.21544 0.95615 1.00776 0.96943 1.21914 0.95649 1.00273
0.99068 1.20807 0.99439 0.81577 0.93476 0.89742 1.46213 1.29601
1.07984 1.55208 1.21165 0.83603 0.87300 0.77655 1.90670 1.24121
1.82513 1.42271 1.20265 0.98164 0.90288 1.02447 1.19058 0.97925
1.06878 0.94159 1.20288 0.97791 0.98294 0.93633 1.20293 0.99578
1.07933 0.98094 1.20664 0.96742 0.99637 0.95583 1.21287 1.00777
1.03500 0.92336 1.17321 0.88486 0.88864 0.92610 1.19435 1.28414
1.05544 0.95198 0.90829 1.25866 0.94464 0.94044 0.99608 1.69817
1.30681 1.03537 1.38189 0.86467 0.80021 0.79231 0.81585 1.19118
1.20386 1.18915 1.21401 0.95643 0.99825 0.94752 0.90318 1.21821
1.01478 1.00800 0.96443 1.21657 0.94804 1.00688 0.97516 0.92655
0.92930 0.92876 0.92406 0.91726 0.91710 0.91236 0.77300 0.90870
0.88767 0.89865 0.89750 0.89652 0.86597 0.90983 0.92423 0.92877
0.92155 0.91902 0.91910
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16
2 C -0.09 -0.78 2.72 -90.62 -0.25 -1.03 16
3 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
4 C -0.11 -1.13 5.05 -26.73 -0.13 -1.27 16
5 C -0.13 -1.58 5.60 -26.73 -0.15 -1.73 16
6 C 0.15 1.99 2.23 -67.93 -0.15 1.84 16
7 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16
8 N -0.74 -10.53 3.54 -53.81 -0.19 -10.72 16
9 C 0.52 9.95 7.43 -10.99 -0.08 9.86 16
10 O -0.52 -12.46 15.70 5.56 0.09 -12.37 16
11 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16
12 C -0.18 -4.35 4.43 -103.91 -0.46 -4.81 16
13 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16
14 C -0.24 -5.69 10.05 -39.29 -0.39 -6.08 16
15 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16
16 C -0.16 -4.34 8.68 -38.88 -0.34 -4.68 16
17 C 0.13 3.51 5.56 -106.82 -0.59 2.91 16
18 C -0.46 -12.11 8.14 -37.74 -0.31 -12.42 16
19 H 0.07 1.90 6.67 -52.49 -0.35 1.55 16
20 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16
21 N -0.80 -20.79 10.97 55.55 0.61 -20.18 16
22 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16
23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16
24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16
25 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16
26 C -0.10 -0.98 2.52 -90.62 -0.23 -1.21 16
27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
28 C -0.15 -1.59 9.03 37.16 0.34 -1.25 16
29 C -0.11 -0.94 4.31 -26.73 -0.12 -1.06 16
30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
34 H 0.06 0.71 7.60 -51.93 -0.39 0.32 16
35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
37 H 0.39 4.66 6.65 -40.82 -0.27 4.39 16
38 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16
39 H 0.09 1.84 7.06 -51.93 -0.37 1.47 16
40 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16
41 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16
42 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16
43 H 0.12 3.23 6.22 -52.48 -0.33 2.91 16
44 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16
45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
47 H 0.06 0.69 7.44 -51.93 -0.39 0.31 16
48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
49 H 0.06 0.55 6.50 -51.93 -0.34 0.21 16
LS Contribution 381.90 15.07 5.76 5.76
Total: -1.00 -30.15 381.90 -10.61 -40.76
By element:
Atomic # 1 Polarization: 17.77 SS G_CDS: -8.30 Total: 9.47 kcal
Atomic # 6 Polarization: -23.22 SS G_CDS: -3.55 Total: -26.77 kcal
Atomic # 7 Polarization: -31.32 SS G_CDS: 0.42 Total: -30.90 kcal
Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal
Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -30.15 -10.61 -40.76 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776921353.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.430 kcal
(2) G-P(sol) polarization free energy of solvation -30.150 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.580 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds