Wall clock time and date at job start Tue Mar 31 2020 10:43:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.47572 * 2 1
4 4 C 1.53002 * 109.46912 * 239.99947 * 2 1 3
5 5 C 1.53002 * 109.46871 * 180.02562 * 4 2 1
6 6 C 1.52991 * 109.47424 * 59.99850 * 5 4 2
7 7 H 1.09000 * 109.47237 * 180.02562 * 6 5 4
8 8 N 1.46508 * 109.47251 * 59.99896 * 6 5 4
9 9 C 1.34780 * 119.99838 * 84.99961 * 8 6 5
10 10 O 1.21281 * 120.00110 * 0.02562 * 9 8 6
11 11 C 1.50694 * 119.99740 * 179.97438 * 9 8 6
12 12 C 1.50699 * 109.46989 * 179.97438 * 11 9 8
13 13 C 1.37641 * 120.13208 * 265.00352 * 12 11 9
14 14 C 1.38608 * 120.24985 * 179.97438 * 13 12 11
15 15 C 1.38650 * 120.50357 * 359.97438 * 14 13 12
16 16 C 1.37593 * 120.24929 * 0.02647 * 15 14 13
17 17 C 1.40698 * 120.12927 * 84.98062 * 12 11 9
18 18 C 1.41396 * 120.24121 * 0.02562 * 17 12 11
19 19 H 1.08001 * 120.00184 * 334.08199 * 18 17 12
20 20 C 1.39947 * 120.00313 * 154.08624 * 18 17 12
21 21 N 1.30829 * 119.99807 * 343.62734 * 20 18 17
22 22 Si 1.86794 * 120.00288 * 163.62300 * 20 18 17
23 23 H 1.48503 * 109.47287 * 60.00132 * 22 20 18
24 24 H 1.48497 * 109.47371 * 179.97438 * 22 20 18
25 25 H 1.48504 * 109.47485 * 300.00405 * 22 20 18
26 26 C 1.53002 * 109.47219 * 299.99937 * 6 5 4
27 27 H 1.09004 * 109.47045 * 299.99881 * 26 6 5
28 28 C 1.53004 * 109.47032 * 179.97438 * 26 6 5
29 29 C 1.52998 * 109.46912 * 60.00257 * 26 6 5
30 30 H 1.09004 * 109.47572 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47093 * 300.00360 * 1 2 3
32 32 H 1.09005 * 109.46992 * 60.00022 * 1 2 3
33 33 H 1.08992 * 109.47530 * 60.00041 * 4 2 1
34 34 H 1.09004 * 109.47189 * 299.99841 * 4 2 1
35 35 H 1.08999 * 109.46737 * 299.99184 * 5 4 2
36 36 H 1.09000 * 109.46608 * 179.97438 * 5 4 2
37 37 H 0.96995 * 119.99949 * 264.99990 * 8 6 5
38 38 H 1.08995 * 109.47127 * 60.00317 * 11 9 8
39 39 H 1.08998 * 109.47581 * 299.99725 * 11 9 8
40 40 H 1.08002 * 119.87128 * 359.97438 * 13 12 11
41 41 H 1.08004 * 119.74686 * 179.97438 * 14 13 12
42 42 H 1.08001 * 119.87484 * 179.74355 * 15 14 13
43 43 H 1.08006 * 120.12806 * 179.97438 * 16 15 14
44 44 H 0.96995 * 119.99565 * 179.97438 * 21 20 18
45 45 H 1.09005 * 109.46811 * 60.00432 * 28 26 6
46 46 H 1.09003 * 109.46690 * 180.02562 * 28 26 6
47 47 H 1.08990 * 109.47340 * 299.99827 * 28 26 6
48 48 H 1.09003 * 109.47093 * 180.02562 * 29 26 6
49 49 H 1.08995 * 109.47474 * 59.99655 * 29 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 3.5699 -0.7218 -1.2489
6 6 4.0795 -1.4434 0.0002
7 1 5.1695 -1.4433 0.0007
8 7 3.5906 -2.8245 0.0000
9 6 4.2673 -3.7787 -0.6694
10 8 5.2810 -3.4941 -1.2713
11 6 3.7648 -5.1994 -0.6692
12 6 4.6940 -6.0610 -1.4847
13 6 4.4190 -6.3120 -2.8098
14 6 5.2723 -7.1037 -3.5623
15 6 6.4111 -7.6511 -2.9913
16 6 6.7060 -7.4136 -1.6685
17 6 5.8465 -6.6117 -0.8946
18 6 6.1393 -6.3609 0.4658
19 1 5.7685 -5.4651 0.9417
20 6 6.9097 -7.2733 1.1956
21 7 7.0899 -8.4871 0.7421
22 14 7.6807 -6.7579 2.8170
23 1 6.6131 -6.3505 3.7655
24 1 8.4408 -7.8985 3.3884
25 1 8.6006 -5.6151 2.5867
26 6 3.5695 -0.7221 1.2495
27 1 3.9332 0.3055 1.2497
28 6 4.0786 -1.4441 2.4988
29 6 2.0395 -0.7216 1.2493
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.6766 -0.2075 -2.1392
34 1 1.6766 -1.7490 -1.2492
35 1 3.9336 0.3057 -1.2489
36 1 3.9332 -1.2361 -2.1387
37 1 2.7801 -3.0521 0.4817
38 1 2.7655 -5.2314 -1.1033
39 1 3.7282 -5.5717 0.3546
40 1 3.5349 -5.8904 -3.2648
41 1 5.0484 -7.2957 -4.6012
42 1 7.0668 -8.2699 -3.5860
43 1 7.5934 -7.8413 -1.2257
44 1 7.6241 -9.1194 1.2478
45 1 5.1686 -1.4447 2.4991
46 1 3.7149 -0.9304 3.3887
47 1 3.7145 -2.4714 2.4984
48 1 1.6762 -0.2074 2.1390
49 1 1.6759 -1.7491 1.2490
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000776921353.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:43:18
Heat of formation + Delta-G solvation = -69.701099 kcal
Electronic energy + Delta-G solvation = -27193.236916 eV
Core-core repulsion = 23696.439302 eV
Total energy + Delta-G solvation = -3496.797614 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.35356 -39.82245 -38.72877 -35.49412 -35.26448 -33.68497 -33.32884 -31.90805
-31.32116 -28.59956 -27.48608 -27.07686 -26.42982 -23.22133 -22.81014 -22.31322
-21.53895 -20.96961 -19.96315 -19.06061 -17.99111 -17.31507 -16.83672 -16.44462
-16.18380 -15.82240 -15.56002 -15.43167 -14.96965 -14.88196 -14.53645 -14.50547
-14.35368 -14.08245 -13.51023 -13.36221 -13.32960 -13.19216 -12.90977 -12.81995
-12.75689 -12.65965 -12.62816 -12.48512 -12.23076 -12.11957 -12.07783 -11.76179
-11.32247 -11.31752 -11.20734 -11.08394 -11.02485 -10.88873 -10.65562 -9.85195
-9.22142 -9.14956 -8.58999 -6.28447 1.00751 1.14300 1.34739 1.44983
1.53913 1.91996 2.19602 2.46096 2.79630 3.67320 3.77616 3.79588
3.82284 4.12078 4.17200 4.23454 4.39064 4.41532 4.44577 4.52063
4.58076 4.61511 4.67398 4.69967 4.72454 4.80298 4.81772 4.88367
4.96677 5.04499 5.06928 5.09862 5.15355 5.17288 5.20591 5.26668
5.31048 5.37238 5.42012 5.46356 5.49960 5.55622 5.63268 5.75283
5.78434 6.04699 6.17562 6.21890 6.42984 6.71578 6.79095 7.00229
7.12298 7.54157 8.37522
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013666 B = 0.004293 C = 0.003490
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2048.329839 B = 6520.946552 C = 8021.022716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.087 4.087
3 H 0.076 0.924
4 C -0.107 4.107
5 C -0.126 4.126
6 C 0.149 3.851
7 H 0.050 0.950
8 N -0.712 5.712
9 C 0.518 3.482
10 O -0.576 6.576
11 C -0.071 4.071
12 C -0.185 4.185
13 C -0.092 4.092
14 C -0.243 4.243
15 C -0.118 4.118
16 C -0.195 4.195
17 C 0.097 3.903
18 C -0.482 4.482
19 H 0.071 0.929
20 C 0.037 3.963
21 N -0.827 5.827
22 Si 0.969 3.031
23 H -0.252 1.252
24 H -0.266 1.266
25 H -0.272 1.272
26 C -0.088 4.088
27 H 0.093 0.907
28 C -0.149 4.149
29 C -0.106 4.106
30 H 0.053 0.947
31 H 0.063 0.937
32 H 0.055 0.945
33 H 0.064 0.936
34 H 0.056 0.944
35 H 0.080 0.920
36 H 0.035 0.965
37 H 0.408 0.592
38 H 0.109 0.891
39 H 0.095 0.905
40 H 0.115 0.885
41 H 0.114 0.886
42 H 0.105 0.895
43 H 0.096 0.904
44 H 0.286 0.714
45 H 0.038 0.962
46 H 0.075 0.925
47 H 0.049 0.951
48 H 0.082 0.918
49 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.939 15.587 4.425 20.736
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.105 4.105
3 H 0.094 0.906
4 C -0.144 4.144
5 C -0.164 4.164
6 C 0.044 3.956
7 H 0.068 0.932
8 N -0.366 5.366
9 C 0.306 3.694
10 O -0.454 6.454
11 C -0.110 4.110
12 C -0.187 4.187
13 C -0.110 4.110
14 C -0.262 4.262
15 C -0.136 4.136
16 C -0.214 4.214
17 C 0.095 3.905
18 C -0.512 4.512
19 H 0.089 0.911
20 C -0.177 4.177
21 N -0.453 5.453
22 Si 0.791 3.209
23 H -0.176 1.176
24 H -0.191 1.191
25 H -0.197 1.197
26 C -0.106 4.106
27 H 0.111 0.889
28 C -0.206 4.206
29 C -0.143 4.143
30 H 0.072 0.928
31 H 0.082 0.918
32 H 0.074 0.926
33 H 0.083 0.917
34 H 0.074 0.926
35 H 0.098 0.902
36 H 0.054 0.946
37 H 0.245 0.755
38 H 0.127 0.873
39 H 0.113 0.887
40 H 0.133 0.867
41 H 0.132 0.868
42 H 0.123 0.877
43 H 0.114 0.886
44 H 0.096 0.904
45 H 0.057 0.943
46 H 0.094 0.906
47 H 0.069 0.931
48 H 0.100 0.900
49 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -12.123 15.556 4.070 20.137
hybrid contribution 0.715 -0.481 0.499 0.996
sum -11.408 15.074 4.569 19.449
Atomic orbital electron populations
1.21802 0.94365 1.01952 1.02075 1.21114 0.95980 0.99566 0.93838
0.90584 1.21520 0.93679 1.00758 0.98490 1.21849 0.97342 1.00415
0.96834 1.20925 0.97688 0.81013 0.95952 0.93195 1.45975 1.29274
1.07930 1.53455 1.21030 0.83051 0.87807 0.77519 1.90653 1.26503
1.83292 1.44988 1.20277 0.98857 0.89859 1.02031 1.19547 0.97650
1.06367 0.95144 1.20720 0.98852 0.97979 0.93477 1.20703 0.98846
1.07052 0.99583 1.20938 0.97714 0.99935 0.95045 1.21303 1.00982
1.05444 0.93691 1.17717 0.89702 0.89782 0.93318 1.19586 1.30126
1.05923 0.95566 0.91126 1.26651 0.94366 0.93712 1.03005 1.69880
1.31230 1.04458 1.39745 0.85445 0.79209 0.78726 0.77539 1.17621
1.19072 1.19699 1.21356 0.96968 0.99844 0.92470 0.88861 1.21831
1.00363 1.00648 0.97759 1.21659 0.93097 1.01076 0.98490 0.92835
0.91813 0.92605 0.91746 0.92557 0.90178 0.94607 0.75467 0.87329
0.88732 0.86733 0.86760 0.87733 0.88589 0.90388 0.94252 0.90608
0.93140 0.89962 0.91933
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.69 9.19 71.98 0.66 -1.03 16
2 C -0.09 -1.19 2.72 -10.79 -0.03 -1.22 16
3 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
4 C -0.11 -1.96 5.05 30.60 0.15 -1.80 16
5 C -0.13 -2.97 5.60 30.59 0.17 -2.80 16
6 C 0.15 3.84 2.23 44.99 0.10 3.94 16
7 H 0.05 1.65 7.58 -2.39 -0.02 1.64 16
8 N -0.71 -20.02 3.54 -442.53 -1.57 -21.58 16
9 C 0.52 20.19 7.43 87.65 0.65 20.84 16
10 O -0.58 -28.53 15.70 -3.03 -0.05 -28.58 16
11 C -0.07 -2.76 5.18 29.10 0.15 -2.61 16
12 C -0.19 -9.12 4.43 -19.40 -0.09 -9.20 16
13 C -0.09 -4.26 9.66 22.22 0.21 -4.04 16
14 C -0.24 -11.35 10.05 22.46 0.23 -11.12 16
15 C -0.12 -5.97 10.02 22.22 0.22 -5.75 16
16 C -0.19 -11.03 8.68 22.73 0.20 -10.84 16
17 C 0.10 5.43 5.56 -21.29 -0.12 5.32 16
18 C -0.48 -26.52 8.14 23.46 0.19 -26.33 16
19 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16
20 C 0.04 1.93 5.16 85.26 0.44 2.37 16
21 N -0.83 -44.58 10.97 21.83 0.24 -44.34 16
22 Si 0.97 39.75 29.59 68.60 2.03 41.78 16
23 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16
24 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16
25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16
26 C -0.09 -1.58 2.52 -10.79 -0.03 -1.61 16
27 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16
28 C -0.15 -2.94 9.03 71.98 0.65 -2.29 16
29 C -0.11 -1.47 4.31 30.59 0.13 -1.34 16
30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16
31 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16
32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16
33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
34 H 0.06 1.12 7.60 -2.38 -0.02 1.11 16
35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16
37 H 0.41 9.00 6.65 -92.71 -0.62 8.39 16
38 H 0.11 3.39 8.05 -2.39 -0.02 3.37 16
39 H 0.09 3.68 7.06 -2.39 -0.02 3.66 16
40 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16
41 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16
42 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16
43 H 0.10 5.68 6.22 -2.91 -0.02 5.66 16
44 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16
45 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16
46 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
47 H 0.05 1.08 7.44 -2.39 -0.02 1.07 16
48 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16
49 H 0.06 0.89 6.50 -2.39 -0.02 0.87 16
Total: -1.00 -68.91 381.90 4.87 -64.04
By element:
Atomic # 1 Polarization: 37.88 SS G_CDS: 0.31 Total: 38.19 kcal
Atomic # 6 Polarization: -53.41 SS G_CDS: 3.90 Total: -49.51 kcal
Atomic # 7 Polarization: -64.60 SS G_CDS: -1.33 Total: -65.92 kcal
Atomic # 8 Polarization: -28.53 SS G_CDS: -0.05 Total: -28.58 kcal
Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal
Total: -68.91 4.87 -64.04 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776921353.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.660 kcal
(2) G-P(sol) polarization free energy of solvation -68.907 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.567 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.041 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.701 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds