Wall clock time and date at job start Tue Mar 31 2020 10:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47398 * 2 1 4 4 C 1.52999 * 109.47111 * 240.00063 * 2 1 3 5 5 C 1.53005 * 109.47316 * 300.00232 * 4 2 1 6 6 C 1.52998 * 109.46864 * 300.00134 * 5 4 2 7 7 H 1.09005 * 109.46965 * 299.99454 * 6 5 4 8 8 N 1.46505 * 109.46741 * 180.02562 * 6 5 4 9 9 C 1.34774 * 120.00063 * 85.00157 * 8 6 5 10 10 O 1.21290 * 120.00165 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00345 * 179.97438 * 9 8 6 12 12 C 1.50698 * 109.47360 * 179.97438 * 11 9 8 13 13 C 1.37639 * 120.12558 * 264.99418 * 12 11 9 14 14 C 1.38608 * 120.24862 * 179.97438 * 13 12 11 15 15 C 1.38655 * 120.49884 * 359.97438 * 14 13 12 16 16 C 1.37598 * 120.25251 * 359.97438 * 15 14 13 17 17 C 1.40688 * 120.13001 * 84.97852 * 12 11 9 18 18 C 1.41396 * 120.24354 * 0.02562 * 17 12 11 19 19 H 1.08000 * 120.00558 * 334.04422 * 18 17 12 20 20 C 1.39945 * 120.00144 * 154.04213 * 18 17 12 21 21 N 1.30827 * 120.00100 * 343.67435 * 20 18 17 22 22 Si 1.86800 * 120.00403 * 163.67140 * 20 18 17 23 23 H 1.48504 * 109.47288 * 89.99789 * 22 20 18 24 24 H 1.48497 * 109.47555 * 210.00241 * 22 20 18 25 25 H 1.48501 * 109.46890 * 330.00120 * 22 20 18 26 26 C 1.52999 * 109.47263 * 59.99833 * 6 5 4 27 27 H 1.08996 * 109.46925 * 60.00216 * 26 6 5 28 28 C 1.53007 * 109.46761 * 179.97438 * 26 6 5 29 29 C 1.52991 * 109.47226 * 299.99956 * 26 6 5 30 30 H 1.09001 * 109.47121 * 299.99702 * 1 2 3 31 31 H 1.09003 * 109.47098 * 59.99714 * 1 2 3 32 32 H 1.09003 * 109.47311 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46958 * 60.00137 * 4 2 1 34 34 H 1.08996 * 109.47449 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47119 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46808 * 60.00385 * 5 4 2 37 37 H 0.96993 * 119.99677 * 264.99270 * 8 6 5 38 38 H 1.08997 * 109.46846 * 59.99510 * 11 9 8 39 39 H 1.09004 * 109.46605 * 299.99993 * 11 9 8 40 40 H 1.08003 * 119.87375 * 359.97438 * 13 12 11 41 41 H 1.07999 * 119.75060 * 179.97438 * 14 13 12 42 42 H 1.08007 * 119.87618 * 179.72159 * 15 14 13 43 43 H 1.07995 * 120.12872 * 179.97438 * 16 15 14 44 44 H 0.97004 * 120.00060 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47017 * 60.00526 * 28 26 6 46 46 H 1.08999 * 109.46649 * 179.97438 * 28 26 6 47 47 H 1.08989 * 109.47334 * 300.00036 * 28 26 6 48 48 H 1.08999 * 109.47536 * 180.02562 * 29 26 6 49 49 H 1.09005 * 109.47178 * 299.99846 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5299 -2.1638 -1.2493 6 6 2.0399 -2.8850 -0.0001 7 1 3.1299 -2.8851 -0.0001 8 7 1.5520 -4.2664 -0.0005 9 6 2.2293 -5.2201 -0.6700 10 8 3.2425 -4.9347 -1.2725 11 6 1.7278 -6.6412 -0.6700 12 6 2.6578 -7.5021 -1.4854 13 6 2.3829 -7.7532 -2.8105 14 6 3.2368 -8.5442 -3.5631 15 6 4.3760 -9.0908 -2.9921 16 6 4.6713 -8.8523 -1.6695 17 6 3.8105 -8.0521 -0.8954 18 6 4.1030 -7.8012 0.4651 19 1 3.7321 -6.9054 0.9410 20 6 4.8731 -8.7136 1.1950 21 7 5.0542 -9.9272 0.7412 22 14 5.6428 -8.1987 2.8174 23 1 4.6989 -8.4875 3.9268 24 1 6.9028 -8.9554 3.0298 25 1 5.9386 -6.7438 2.7852 26 6 1.5299 -2.1638 1.2491 27 1 0.4399 -2.1638 1.2491 28 6 2.0394 -2.8855 2.4984 29 6 2.0399 -0.7214 1.2492 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6766 -0.2073 -2.1392 34 1 3.1299 -0.7209 -1.2495 35 1 1.8929 -2.6774 -2.1396 36 1 0.4399 -2.1637 -1.2494 37 1 0.7416 -4.4947 0.4811 38 1 0.7286 -6.6738 -1.1042 39 1 1.6914 -7.0136 0.3538 40 1 1.4985 -7.3322 -3.2656 41 1 3.0131 -8.7364 -4.6020 42 1 5.0320 -9.7094 -3.5866 43 1 5.5589 -9.2793 -1.2267 44 1 5.5877 -10.5597 1.2474 45 1 3.1294 -2.8859 2.4986 46 1 1.6764 -2.3714 3.3883 47 1 1.6757 -3.9130 2.4981 48 1 1.6770 -0.2076 2.1394 49 1 3.1299 -0.7214 1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776921355.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:25 Heat of formation + Delta-G solvation = -54.170015 kcal Electronic energy + Delta-G solvation = -27049.940624 eV Core-core repulsion = 23553.816489 eV Total energy + Delta-G solvation = -3496.124135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.09333 -38.51793 -37.14521 -34.34790 -33.56843 -32.53966 -31.72681 -30.32019 -29.39158 -27.13869 -26.72756 -25.86315 -24.84959 -22.42447 -21.21300 -20.87442 -20.30474 -19.40483 -18.64843 -17.12247 -16.33843 -16.06364 -15.38244 -15.16578 -14.94925 -14.61032 -14.43105 -13.89653 -13.75656 -13.62415 -13.18405 -13.02418 -12.86620 -12.68472 -12.52967 -12.21860 -12.03756 -11.89668 -11.68035 -11.52846 -11.44343 -11.16836 -11.09037 -10.94445 -10.92778 -10.91432 -10.65765 -10.40630 -10.35711 -10.29991 -10.09508 -9.43068 -9.32686 -9.11537 -9.02066 -8.56381 -7.25767 -7.23145 -6.68976 -4.28921 2.83022 3.02676 3.09200 3.14630 3.31086 3.44164 3.73436 3.97373 4.55291 4.57940 4.69452 4.72317 4.92600 5.07184 5.17904 5.32389 5.38884 5.44217 5.48142 5.51338 5.65467 5.66503 5.72591 5.80403 5.85930 5.87872 5.95824 6.01753 6.04342 6.09550 6.14537 6.17000 6.21185 6.28354 6.33629 6.37954 6.47376 6.50475 6.56242 6.85730 6.96256 7.13753 7.34932 7.47774 7.69829 7.96104 8.05291 8.14243 8.18497 8.37076 8.70287 8.96812 8.98458 9.07183 10.25367 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.004113 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.358431 B = 6805.356121 C = 8312.529965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.153 3.847 7 H 0.084 0.916 8 N -0.740 5.740 9 C 0.516 3.484 10 O -0.521 6.521 11 C -0.072 4.072 12 C -0.179 4.179 13 C -0.082 4.082 14 C -0.240 4.240 15 C -0.108 4.108 16 C -0.160 4.160 17 C 0.129 3.871 18 C -0.456 4.456 19 H 0.074 0.926 20 C 0.077 3.923 21 N -0.796 5.796 22 Si 0.901 3.099 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.262 1.262 26 C -0.098 4.098 27 H 0.075 0.925 28 C -0.149 4.149 29 C -0.106 4.106 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.393 0.607 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.279 0.721 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.809 15.089 3.305 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.169 4.169 6 C 0.048 3.952 7 H 0.102 0.898 8 N -0.394 5.394 9 C 0.303 3.697 10 O -0.395 6.395 11 C -0.112 4.112 12 C -0.181 4.181 13 C -0.100 4.100 14 C -0.259 4.259 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.127 3.873 18 C -0.486 4.486 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.422 5.422 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.186 1.186 26 C -0.117 4.117 27 H 0.093 0.907 28 C -0.206 4.206 29 C -0.144 4.144 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.226 0.774 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.134 0.866 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.926 15.042 2.924 17.252 hybrid contribution 0.011 0.008 0.947 0.948 sum -7.915 15.049 3.871 17.439 Atomic orbital electron populations 1.21940 0.95448 1.02156 1.01191 1.21124 0.95873 0.98993 0.95152 0.91401 1.21525 1.00893 0.95335 0.97236 1.21955 1.00719 0.95240 0.98959 1.20854 0.99926 0.80986 0.93466 0.89786 1.46196 1.29681 1.08147 1.55332 1.21181 0.83590 0.87317 0.77611 1.90675 1.24122 1.82488 1.42176 1.20270 0.98194 0.90207 1.02485 1.19056 0.97925 1.06908 0.94166 1.20292 0.97794 0.98295 0.93633 1.20295 0.99561 1.07941 0.98097 1.20669 0.96735 0.99626 0.95586 1.21285 1.00766 1.03507 0.92341 1.17323 0.88486 0.88858 0.92626 1.19457 1.28369 1.05540 0.95190 0.90809 1.25867 0.94452 0.94053 0.99614 1.69824 1.30770 1.03559 1.38063 0.86433 0.79174 0.80173 0.81685 1.19566 1.20116 1.18566 1.21411 1.00658 0.94929 0.94666 0.90689 1.21833 1.01706 1.00555 0.96498 1.21581 1.00910 0.94440 0.97468 0.93029 0.92997 0.91947 0.92033 0.91782 0.91396 0.91847 0.77375 0.90797 0.88721 0.89848 0.89737 0.89645 0.86599 0.91034 0.92507 0.92884 0.92126 0.91781 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.50 37.16 0.32 -0.87 16 2 C -0.09 -0.81 3.20 -90.62 -0.29 -1.10 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -1.16 5.45 -26.73 -0.15 -1.30 16 5 C -0.13 -1.60 5.22 -26.73 -0.14 -1.74 16 6 C 0.15 2.02 1.90 -67.93 -0.13 1.89 16 7 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 8 N -0.74 -10.70 4.38 -53.80 -0.24 -10.94 16 9 C 0.52 10.02 7.43 -10.99 -0.08 9.94 16 10 O -0.52 -12.52 15.70 5.55 0.09 -12.44 16 11 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16 12 C -0.18 -4.36 4.43 -103.92 -0.46 -4.82 16 13 C -0.08 -1.92 9.66 -39.66 -0.38 -2.31 16 14 C -0.24 -5.69 10.05 -39.29 -0.39 -6.09 16 15 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 16 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 17 C 0.13 3.51 5.56 -106.83 -0.59 2.91 16 18 C -0.46 -12.12 8.14 -37.74 -0.31 -12.43 16 19 H 0.07 1.91 6.68 -52.49 -0.35 1.56 16 20 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 21 N -0.80 -20.80 10.97 55.55 0.61 -20.19 16 22 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 26 C -0.10 -1.00 2.02 -90.62 -0.18 -1.18 16 27 H 0.07 0.69 6.43 -51.93 -0.33 0.36 16 28 C -0.15 -1.61 9.04 37.16 0.34 -1.28 16 29 C -0.11 -0.97 4.73 -26.74 -0.13 -1.10 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 37 H 0.39 4.53 8.39 -40.82 -0.34 4.19 16 38 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 39 H 0.09 1.84 7.06 -51.93 -0.37 1.47 16 40 H 0.08 1.73 8.06 -52.48 -0.42 1.30 16 41 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 43 H 0.12 3.23 6.22 -52.49 -0.33 2.91 16 44 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.69 7.44 -51.94 -0.39 0.31 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -30.45 379.31 -10.54 -40.99 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.13 Total: 9.74 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -3.56 Total: -26.92 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.37 Total: -31.12 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.45 -10.54 -40.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776921355.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.176 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds