Wall clock time and date at job start Tue Mar 31 2020 10:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47398 * 2 1 4 4 C 1.52999 * 109.47111 * 240.00063 * 2 1 3 5 5 C 1.53005 * 109.47316 * 300.00232 * 4 2 1 6 6 C 1.52998 * 109.46864 * 300.00134 * 5 4 2 7 7 H 1.09005 * 109.46965 * 299.99454 * 6 5 4 8 8 N 1.46505 * 109.46741 * 180.02562 * 6 5 4 9 9 C 1.34774 * 120.00063 * 85.00157 * 8 6 5 10 10 O 1.21290 * 120.00165 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00345 * 179.97438 * 9 8 6 12 12 C 1.50698 * 109.47360 * 179.97438 * 11 9 8 13 13 C 1.37639 * 120.12558 * 264.99418 * 12 11 9 14 14 C 1.38608 * 120.24862 * 179.97438 * 13 12 11 15 15 C 1.38655 * 120.49884 * 359.97438 * 14 13 12 16 16 C 1.37598 * 120.25251 * 359.97438 * 15 14 13 17 17 C 1.40688 * 120.13001 * 84.97852 * 12 11 9 18 18 C 1.41396 * 120.24354 * 0.02562 * 17 12 11 19 19 H 1.08000 * 120.00558 * 334.04422 * 18 17 12 20 20 C 1.39945 * 120.00144 * 154.04213 * 18 17 12 21 21 N 1.30827 * 120.00100 * 343.67435 * 20 18 17 22 22 Si 1.86800 * 120.00403 * 163.67140 * 20 18 17 23 23 H 1.48504 * 109.47288 * 89.99789 * 22 20 18 24 24 H 1.48497 * 109.47555 * 210.00241 * 22 20 18 25 25 H 1.48501 * 109.46890 * 330.00120 * 22 20 18 26 26 C 1.52999 * 109.47263 * 59.99833 * 6 5 4 27 27 H 1.08996 * 109.46925 * 60.00216 * 26 6 5 28 28 C 1.53007 * 109.46761 * 179.97438 * 26 6 5 29 29 C 1.52991 * 109.47226 * 299.99956 * 26 6 5 30 30 H 1.09001 * 109.47121 * 299.99702 * 1 2 3 31 31 H 1.09003 * 109.47098 * 59.99714 * 1 2 3 32 32 H 1.09003 * 109.47311 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46958 * 60.00137 * 4 2 1 34 34 H 1.08996 * 109.47449 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47119 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46808 * 60.00385 * 5 4 2 37 37 H 0.96993 * 119.99677 * 264.99270 * 8 6 5 38 38 H 1.08997 * 109.46846 * 59.99510 * 11 9 8 39 39 H 1.09004 * 109.46605 * 299.99993 * 11 9 8 40 40 H 1.08003 * 119.87375 * 359.97438 * 13 12 11 41 41 H 1.07999 * 119.75060 * 179.97438 * 14 13 12 42 42 H 1.08007 * 119.87618 * 179.72159 * 15 14 13 43 43 H 1.07995 * 120.12872 * 179.97438 * 16 15 14 44 44 H 0.97004 * 120.00060 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47017 * 60.00526 * 28 26 6 46 46 H 1.08999 * 109.46649 * 179.97438 * 28 26 6 47 47 H 1.08989 * 109.47334 * 300.00036 * 28 26 6 48 48 H 1.08999 * 109.47536 * 180.02562 * 29 26 6 49 49 H 1.09005 * 109.47178 * 299.99846 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5299 -2.1638 -1.2493 6 6 2.0399 -2.8850 -0.0001 7 1 3.1299 -2.8851 -0.0001 8 7 1.5520 -4.2664 -0.0005 9 6 2.2293 -5.2201 -0.6700 10 8 3.2425 -4.9347 -1.2725 11 6 1.7278 -6.6412 -0.6700 12 6 2.6578 -7.5021 -1.4854 13 6 2.3829 -7.7532 -2.8105 14 6 3.2368 -8.5442 -3.5631 15 6 4.3760 -9.0908 -2.9921 16 6 4.6713 -8.8523 -1.6695 17 6 3.8105 -8.0521 -0.8954 18 6 4.1030 -7.8012 0.4651 19 1 3.7321 -6.9054 0.9410 20 6 4.8731 -8.7136 1.1950 21 7 5.0542 -9.9272 0.7412 22 14 5.6428 -8.1987 2.8174 23 1 4.6989 -8.4875 3.9268 24 1 6.9028 -8.9554 3.0298 25 1 5.9386 -6.7438 2.7852 26 6 1.5299 -2.1638 1.2491 27 1 0.4399 -2.1638 1.2491 28 6 2.0394 -2.8855 2.4984 29 6 2.0399 -0.7214 1.2492 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6766 -0.2073 -2.1392 34 1 3.1299 -0.7209 -1.2495 35 1 1.8929 -2.6774 -2.1396 36 1 0.4399 -2.1637 -1.2494 37 1 0.7416 -4.4947 0.4811 38 1 0.7286 -6.6738 -1.1042 39 1 1.6914 -7.0136 0.3538 40 1 1.4985 -7.3322 -3.2656 41 1 3.0131 -8.7364 -4.6020 42 1 5.0320 -9.7094 -3.5866 43 1 5.5589 -9.2793 -1.2267 44 1 5.5877 -10.5597 1.2474 45 1 3.1294 -2.8859 2.4986 46 1 1.6764 -2.3714 3.3883 47 1 1.6757 -3.9130 2.4981 48 1 1.6770 -0.2076 2.1394 49 1 3.1299 -0.7214 1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776921355.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:24 Heat of formation + Delta-G solvation = -69.702430 kcal Electronic energy + Delta-G solvation = -27050.614160 eV Core-core repulsion = 23553.816489 eV Total energy + Delta-G solvation = -3496.797671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27324 -39.94002 -38.86369 -35.53771 -35.48552 -33.60940 -33.34775 -31.48640 -31.27442 -28.61908 -27.51979 -27.17366 -26.53661 -23.51244 -22.81349 -22.20456 -21.80379 -20.95036 -19.62172 -19.05001 -17.70509 -17.45221 -17.10386 -16.30974 -16.18039 -16.01973 -15.72711 -15.40079 -15.13900 -14.82434 -14.58445 -14.41777 -14.30987 -13.90348 -13.64817 -13.48197 -13.36929 -13.09334 -12.90519 -12.89319 -12.75350 -12.69616 -12.63453 -12.49107 -12.22310 -12.13857 -11.95594 -11.75559 -11.32167 -11.28612 -11.21793 -11.16888 -11.02189 -10.99282 -10.58971 -9.86726 -9.22324 -9.15140 -8.59532 -6.28846 0.99937 1.13686 1.34328 1.45634 1.52801 1.90225 2.19291 2.42041 2.79024 3.64775 3.74449 3.77677 3.91336 4.12824 4.16203 4.22267 4.36050 4.41043 4.41658 4.50430 4.54792 4.57289 4.62651 4.70313 4.72324 4.79382 4.82282 4.84962 4.97507 5.02506 5.06172 5.10573 5.13642 5.16712 5.20251 5.24832 5.29670 5.36856 5.41604 5.43704 5.46932 5.55350 5.64142 5.73375 5.78172 6.04383 6.17321 6.21582 6.42630 6.71324 6.78948 6.99892 7.11939 7.53070 8.37165 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.004113 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.358431 B = 6805.356121 C = 8312.529965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.111 4.111 5 C -0.123 4.123 6 C 0.151 3.849 7 H 0.045 0.955 8 N -0.719 5.719 9 C 0.518 3.482 10 O -0.576 6.576 11 C -0.070 4.070 12 C -0.186 4.186 13 C -0.092 4.092 14 C -0.243 4.243 15 C -0.118 4.118 16 C -0.195 4.195 17 C 0.097 3.903 18 C -0.482 4.482 19 H 0.070 0.930 20 C 0.037 3.963 21 N -0.827 5.827 22 Si 0.969 3.031 23 H -0.253 1.253 24 H -0.268 1.268 25 H -0.270 1.270 26 C -0.087 4.087 27 H 0.098 0.902 28 C -0.149 4.149 29 C -0.105 4.105 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.083 0.917 37 H 0.411 0.589 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.286 0.714 45 H 0.034 0.966 46 H 0.076 0.924 47 H 0.052 0.948 48 H 0.085 0.915 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.275 16.954 4.388 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.162 4.162 6 C 0.047 3.953 7 H 0.063 0.937 8 N -0.372 5.372 9 C 0.306 3.694 10 O -0.454 6.454 11 C -0.110 4.110 12 C -0.188 4.188 13 C -0.110 4.110 14 C -0.262 4.262 15 C -0.136 4.136 16 C -0.214 4.214 17 C 0.094 3.906 18 C -0.512 4.512 19 H 0.088 0.912 20 C -0.177 4.177 21 N -0.453 5.453 22 Si 0.791 3.209 23 H -0.177 1.177 24 H -0.192 1.192 25 H -0.194 1.194 26 C -0.106 4.106 27 H 0.116 0.884 28 C -0.207 4.207 29 C -0.143 4.143 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.248 0.752 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.054 0.946 46 H 0.095 0.905 47 H 0.071 0.929 48 H 0.104 0.896 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.447 16.915 4.028 20.285 hybrid contribution 0.734 -0.557 0.511 1.054 sum -9.713 16.358 4.539 19.558 Atomic orbital electron populations 1.21924 0.94198 1.02241 1.02165 1.21103 0.96800 0.99164 0.93575 0.90166 1.21528 0.99974 0.94369 0.99025 1.21875 1.01696 0.95936 0.96673 1.20959 0.97890 0.80494 0.95986 0.93695 1.45971 1.29495 1.08046 1.53641 1.21077 0.83028 0.87882 0.77446 1.90659 1.26559 1.83295 1.44934 1.20287 0.98932 0.89655 1.02121 1.19555 0.97654 1.06381 0.95169 1.20731 0.98877 0.97970 0.93471 1.20709 0.98821 1.07046 0.99595 1.20943 0.97719 0.99932 0.95044 1.21301 1.00965 1.05458 0.93702 1.17719 0.89721 0.89790 0.93320 1.19599 1.30127 1.05901 0.95575 0.91188 1.26647 0.94352 0.93723 1.03002 1.69884 1.31334 1.04470 1.39635 0.85399 0.78714 0.79060 0.77757 1.17749 1.19230 1.19418 1.21380 1.01791 0.95080 0.92368 0.88372 1.21850 1.00381 1.00590 0.97854 1.21599 1.00223 0.93749 0.98737 0.91670 0.92526 0.92219 0.90957 0.93415 0.94840 0.89870 0.75213 0.87092 0.88611 0.86650 0.86729 0.87724 0.88602 0.90387 0.94648 0.90526 0.92871 0.89624 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.50 71.98 0.61 -1.18 16 2 C -0.09 -1.31 3.20 -10.79 -0.03 -1.35 16 3 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.11 -2.19 5.45 30.60 0.17 -2.02 16 5 C -0.12 -2.95 5.22 30.60 0.16 -2.79 16 6 C 0.15 3.98 1.90 44.99 0.09 4.06 16 7 H 0.04 1.56 7.58 -2.38 -0.02 1.54 16 8 N -0.72 -20.26 4.38 -442.52 -1.94 -22.20 16 9 C 0.52 20.28 7.43 87.66 0.65 20.93 16 10 O -0.58 -28.81 15.70 -3.06 -0.05 -28.86 16 11 C -0.07 -2.74 5.18 29.10 0.15 -2.59 16 12 C -0.19 -9.14 4.43 -19.41 -0.09 -9.23 16 13 C -0.09 -4.27 9.66 22.22 0.21 -4.05 16 14 C -0.24 -11.34 10.05 22.46 0.23 -11.11 16 15 C -0.12 -5.98 10.02 22.22 0.22 -5.75 16 16 C -0.19 -11.05 8.69 22.73 0.20 -10.85 16 17 C 0.10 5.43 5.56 -21.29 -0.12 5.31 16 18 C -0.48 -26.60 8.14 23.46 0.19 -26.41 16 19 H 0.07 3.77 6.68 -2.91 -0.02 3.75 16 20 C 0.04 1.93 5.16 85.26 0.44 2.37 16 21 N -0.83 -44.61 10.97 21.83 0.24 -44.37 16 22 Si 0.97 39.86 29.59 68.60 2.03 41.89 16 23 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 24 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C -0.09 -1.61 2.02 -10.79 -0.02 -1.63 16 27 H 0.10 1.42 6.43 -2.39 -0.02 1.41 16 28 C -0.15 -3.01 9.04 71.98 0.65 -2.36 16 29 C -0.11 -1.69 4.73 30.59 0.14 -1.55 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.75 4.81 -2.39 -0.01 0.74 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.65 6.43 -2.39 -0.02 1.64 16 37 H 0.41 8.61 8.39 -92.71 -0.78 7.83 16 38 H 0.11 3.42 8.05 -2.39 -0.02 3.40 16 39 H 0.10 3.70 7.06 -2.39 -0.02 3.68 16 40 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 42 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.10 5.68 6.22 -2.91 -0.02 5.66 16 44 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 45 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.05 1.13 7.44 -2.39 -0.02 1.12 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -70.11 379.31 4.29 -65.82 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: 0.16 Total: 37.92 kcal Atomic # 6 Polarization: -54.06 SS G_CDS: 3.85 Total: -50.21 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -1.70 Total: -66.57 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.05 Total: -28.86 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -70.11 4.29 -65.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776921355.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.881 kcal (2) G-P(sol) polarization free energy of solvation -70.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds