Wall clock time and date at job start Tue Mar 31 2020 11:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00284 * 2 1 4 4 C 1.53000 * 109.47294 * 125.00205 * 3 2 1 5 5 C 1.52999 * 109.47144 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47144 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47316 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47266 * 180.02562 * 7 6 5 9 9 C 1.46501 * 119.99673 * 269.99674 * 8 7 6 10 10 C 1.34773 * 120.00266 * 90.00082 * 8 7 6 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 8 7 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 8 7 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 8 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.07997 * 119.99601 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99789 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00201 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47186 * 5.00259 * 3 2 1 31 31 H 1.09002 * 109.47332 * 245.00356 * 3 2 1 32 32 H 1.08991 * 109.47023 * 60.00177 * 4 3 2 33 33 H 1.09002 * 109.47053 * 300.00321 * 4 3 2 34 34 H 1.09000 * 109.47154 * 60.00162 * 5 4 3 35 35 H 1.09002 * 109.47103 * 299.99918 * 5 4 3 36 36 H 1.08996 * 109.47021 * 59.99302 * 6 5 4 37 37 H 1.09002 * 109.47053 * 299.99948 * 6 5 4 38 38 H 1.09005 * 109.47510 * 59.99841 * 7 6 5 39 39 H 1.08998 * 109.47322 * 299.99584 * 7 6 5 40 40 H 1.08995 * 109.47181 * 269.99950 * 9 8 7 41 41 H 1.09006 * 109.47212 * 30.00135 * 9 8 7 42 42 H 1.09002 * 109.46759 * 149.99698 * 9 8 7 43 43 H 1.09001 * 109.46892 * 59.99768 * 12 10 8 44 44 H 1.08991 * 109.47294 * 299.99778 * 12 10 8 45 45 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 46 46 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 47 47 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 48 48 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 49 49 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0352 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 6 4.7709 2.6865 2.3639 7 6 5.5350 4.0119 2.3646 8 7 6.4653 4.0387 3.4961 9 6 6.0301 4.5708 4.7898 10 6 7.7215 3.5739 3.3467 11 8 8.0816 3.1330 2.2758 12 6 8.6783 3.6009 4.5107 13 6 10.0055 3.0288 4.0835 14 6 10.2865 1.6989 4.3003 15 6 11.5090 1.1717 3.9144 16 6 12.4589 1.9737 3.3004 17 6 12.1972 3.3044 3.0680 18 6 10.9594 3.8505 3.4556 19 6 10.6790 5.2165 3.2212 20 1 9.6560 5.5486 3.1235 21 6 11.7269 6.1378 3.1157 22 7 12.8733 5.8940 3.6970 23 14 11.4889 7.7160 2.1450 24 1 12.7393 8.5160 2.1865 25 1 11.1590 7.3851 0.7355 26 1 10.3791 8.5017 2.7419 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3587 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.7400 0.5065 1.0920 33 1 2.4774 1.2355 2.1130 34 1 3.0946 3.4846 1.2718 35 1 4.3575 2.7562 0.2505 36 1 5.4760 1.8601 2.2745 37 1 4.2128 2.5888 3.2951 38 1 4.8295 4.8380 2.4542 39 1 6.0931 4.1101 1.4335 40 1 6.2358 5.6403 4.8305 41 1 4.9600 4.4017 4.9108 42 1 6.5705 4.0660 5.5906 43 1 8.2725 3.0052 5.3284 44 1 8.8160 4.6294 4.8440 45 1 9.5537 1.0650 4.7772 46 1 11.7230 0.1283 4.0929 47 1 13.4080 1.5523 3.0034 48 1 12.9384 3.9271 2.5893 49 1 12.9710 5.1176 4.2701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776953677.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:05 Heat of formation + Delta-G solvation = -30.633460 kcal Electronic energy + Delta-G solvation = -25709.890762 eV Core-core repulsion = 22214.787249 eV Total energy + Delta-G solvation = -3495.103514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -39.51847 -37.66588 -36.85468 -35.37700 -33.80717 -33.75052 -31.83552 -30.22036 -29.16696 -27.24405 -26.75751 -25.32224 -24.66732 -22.42791 -21.17449 -20.89187 -20.18198 -19.95167 -18.59308 -17.63373 -16.60798 -16.04475 -15.73357 -15.37374 -15.07442 -14.83190 -14.25936 -14.13203 -14.02613 -13.79933 -13.50322 -13.04331 -12.94926 -12.65139 -12.42798 -12.27601 -12.24672 -11.98588 -11.97350 -11.67570 -11.58857 -11.26376 -11.18118 -11.13984 -10.97279 -10.82374 -10.80352 -10.55963 -10.42303 -10.35812 -9.61231 -9.59590 -9.33544 -9.11663 -8.91407 -8.31997 -7.50831 -7.45916 -7.07965 -4.37396 1.98791 2.79176 2.89298 3.17893 3.31446 3.32467 3.40154 3.43855 4.05580 4.48117 4.62832 4.70744 4.86641 4.88355 5.02267 5.08936 5.21265 5.28751 5.40882 5.44252 5.46350 5.53929 5.59771 5.68639 5.72872 5.76045 5.77348 5.80752 5.88634 5.97482 6.07185 6.08508 6.21425 6.25854 6.29903 6.34664 6.37454 6.40584 6.48423 6.72495 6.87616 7.04754 7.25684 7.46639 7.69487 7.83499 7.87676 7.91657 7.99968 8.25723 8.39566 8.82790 8.85696 8.97373 10.11357 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.002790 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.195150 B =10033.056234 C =10908.561193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.097 4.097 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.133 4.133 7 C 0.117 3.883 8 N -0.632 5.632 9 C 0.082 3.918 10 C 0.516 3.484 11 O -0.519 6.519 12 C -0.068 4.068 13 C -0.185 4.185 14 C -0.069 4.069 15 C -0.253 4.253 16 C -0.086 4.086 17 C -0.216 4.216 18 C 0.116 3.884 19 C -0.516 4.516 20 H 0.071 0.929 21 C 0.040 3.960 22 N -0.799 5.799 23 Si 1.060 2.940 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.277 1.277 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.104 0.896 49 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.194 -3.048 -0.531 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.168 4.168 3 C -0.134 4.134 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.172 4.172 7 C -0.006 4.006 8 N -0.368 5.368 9 C -0.061 4.061 10 C 0.305 3.695 11 O -0.393 6.393 12 C -0.107 4.107 13 C -0.186 4.186 14 C -0.088 4.088 15 C -0.273 4.273 16 C -0.105 4.105 17 C -0.235 4.235 18 C 0.113 3.887 19 C -0.544 4.544 20 H 0.089 0.911 21 C -0.182 4.182 22 N -0.423 5.423 23 Si 0.884 3.116 24 H -0.199 1.199 25 H -0.200 1.200 26 H -0.203 1.203 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.122 0.878 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.132 -1.912 -1.605 18.303 hybrid contribution -0.919 -1.528 0.593 1.879 sum -19.051 -3.441 -1.013 19.385 Atomic orbital electron populations 1.23836 0.95992 1.01700 1.02289 1.23040 0.96054 0.98787 0.98918 1.20812 0.98235 0.95088 0.99243 1.21528 0.97676 0.98081 0.97870 1.21528 0.97800 0.97256 0.98873 1.21942 0.98135 0.98973 0.98124 1.21361 0.91787 0.96635 0.90859 1.48011 1.12527 1.64569 1.11715 1.21711 1.00109 0.99026 0.85268 1.21211 0.81073 0.76275 0.90922 1.90669 1.75949 1.44366 1.28266 1.20271 0.92838 1.02849 0.94766 1.19049 0.95957 0.94342 1.09293 1.20346 0.95582 0.93979 0.98845 1.20256 0.96337 0.98027 1.12645 1.20597 0.97114 0.94316 0.98473 1.21135 0.99703 0.94677 1.08011 1.17392 0.90690 0.92957 0.87625 1.20426 0.96128 0.92775 1.45057 0.91059 1.26922 0.91826 1.03978 0.95433 1.70451 1.25522 1.27850 1.18442 0.83717 0.76889 0.74095 0.76915 1.19888 1.20044 1.20264 0.88693 0.88691 0.87461 0.91598 0.90890 0.91763 0.92046 0.92063 0.91632 0.91455 0.92252 0.91326 0.90063 0.92822 0.91776 0.90965 0.90790 0.88755 0.89700 0.89489 0.89412 0.87772 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 14.32 29.01 0.42 -1.06 16 2 C -0.15 -1.20 9.52 -36.03 -0.34 -1.55 16 3 C -0.10 -0.78 5.66 -27.88 -0.16 -0.94 16 4 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 5 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 6 C -0.13 -1.57 5.54 -26.74 -0.15 -1.72 16 7 C 0.12 1.57 5.41 -4.04 -0.02 1.55 16 8 N -0.63 -9.76 2.87 -181.57 -0.52 -10.28 16 9 C 0.08 0.93 10.24 59.85 0.61 1.55 16 10 C 0.52 10.43 7.31 -10.99 -0.08 10.34 16 11 O -0.52 -12.75 15.61 5.56 0.09 -12.67 16 12 C -0.07 -1.36 3.73 -29.03 -0.11 -1.47 16 13 C -0.18 -4.52 4.43 -103.91 -0.46 -4.98 16 14 C -0.07 -1.62 9.66 -39.66 -0.38 -2.00 16 15 C -0.25 -5.94 10.05 -39.29 -0.39 -6.34 16 16 C -0.09 -2.11 10.02 -39.66 -0.40 -2.51 16 17 C -0.22 -5.78 7.95 -38.87 -0.31 -6.09 16 18 C 0.12 3.13 5.30 -106.82 -0.57 2.57 16 19 C -0.52 -13.78 8.08 -37.74 -0.30 -14.09 16 20 H 0.07 1.89 6.73 -52.49 -0.35 1.53 16 21 C 0.04 1.03 4.94 -17.34 -0.09 0.94 16 22 N -0.80 -21.38 12.31 55.55 0.68 -20.70 16 23 Si 1.06 22.23 30.00 -169.99 -5.10 17.13 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 27 H 0.09 0.64 7.84 -52.49 -0.41 0.23 16 28 H 0.09 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 39 H 0.08 1.29 7.42 -51.93 -0.39 0.90 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 42 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 43 H 0.07 1.26 7.31 -51.93 -0.38 0.88 16 44 H 0.09 1.89 7.02 -51.93 -0.36 1.53 16 45 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 47 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 48 H 0.10 2.86 6.49 -52.49 -0.34 2.52 16 49 H 0.30 8.19 6.68 -40.82 -0.27 7.92 16 LS Contribution 399.99 15.07 6.03 6.03 Total: -1.00 -31.08 399.99 -10.21 -41.29 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -8.38 Total: 7.41 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: -3.01 Total: -28.21 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.16 Total: -30.98 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.10 Total: 17.13 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.08 -10.21 -41.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776953677.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.661 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds