Wall clock time and date at job start Tue Mar 31 2020 11:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00284 * 2 1 4 4 C 1.53000 * 109.47294 * 125.00205 * 3 2 1 5 5 C 1.52999 * 109.47144 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47144 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47316 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47266 * 180.02562 * 7 6 5 9 9 C 1.46501 * 119.99673 * 269.99674 * 8 7 6 10 10 C 1.34773 * 120.00266 * 90.00082 * 8 7 6 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 8 7 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 8 7 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 8 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.07997 * 119.99601 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99789 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00201 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47186 * 5.00259 * 3 2 1 31 31 H 1.09002 * 109.47332 * 245.00356 * 3 2 1 32 32 H 1.08991 * 109.47023 * 60.00177 * 4 3 2 33 33 H 1.09002 * 109.47053 * 300.00321 * 4 3 2 34 34 H 1.09000 * 109.47154 * 60.00162 * 5 4 3 35 35 H 1.09002 * 109.47103 * 299.99918 * 5 4 3 36 36 H 1.08996 * 109.47021 * 59.99302 * 6 5 4 37 37 H 1.09002 * 109.47053 * 299.99948 * 6 5 4 38 38 H 1.09005 * 109.47510 * 59.99841 * 7 6 5 39 39 H 1.08998 * 109.47322 * 299.99584 * 7 6 5 40 40 H 1.08995 * 109.47181 * 269.99950 * 9 8 7 41 41 H 1.09006 * 109.47212 * 30.00135 * 9 8 7 42 42 H 1.09002 * 109.46759 * 149.99698 * 9 8 7 43 43 H 1.09001 * 109.46892 * 59.99768 * 12 10 8 44 44 H 1.08991 * 109.47294 * 299.99778 * 12 10 8 45 45 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 46 46 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 47 47 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 48 48 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 49 49 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0352 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 6 4.7709 2.6865 2.3639 7 6 5.5350 4.0119 2.3646 8 7 6.4653 4.0387 3.4961 9 6 6.0301 4.5708 4.7898 10 6 7.7215 3.5739 3.3467 11 8 8.0816 3.1330 2.2758 12 6 8.6783 3.6009 4.5107 13 6 10.0055 3.0288 4.0835 14 6 10.2865 1.6989 4.3003 15 6 11.5090 1.1717 3.9144 16 6 12.4589 1.9737 3.3004 17 6 12.1972 3.3044 3.0680 18 6 10.9594 3.8505 3.4556 19 6 10.6790 5.2165 3.2212 20 1 9.6560 5.5486 3.1235 21 6 11.7269 6.1378 3.1157 22 7 12.8733 5.8940 3.6970 23 14 11.4889 7.7160 2.1450 24 1 12.7393 8.5160 2.1865 25 1 11.1590 7.3851 0.7355 26 1 10.3791 8.5017 2.7419 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3587 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.7400 0.5065 1.0920 33 1 2.4774 1.2355 2.1130 34 1 3.0946 3.4846 1.2718 35 1 4.3575 2.7562 0.2505 36 1 5.4760 1.8601 2.2745 37 1 4.2128 2.5888 3.2951 38 1 4.8295 4.8380 2.4542 39 1 6.0931 4.1101 1.4335 40 1 6.2358 5.6403 4.8305 41 1 4.9600 4.4017 4.9108 42 1 6.5705 4.0660 5.5906 43 1 8.2725 3.0052 5.3284 44 1 8.8160 4.6294 4.8440 45 1 9.5537 1.0650 4.7772 46 1 11.7230 0.1283 4.0929 47 1 13.4080 1.5523 3.0034 48 1 12.9384 3.9271 2.5893 49 1 12.9710 5.1176 4.2701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776953677.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:04 Heat of formation + Delta-G solvation = -44.868674 kcal Electronic energy + Delta-G solvation = -25710.508048 eV Core-core repulsion = 22214.787249 eV Total energy + Delta-G solvation = -3495.720799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.02524 -39.44041 -37.73734 -36.56595 -35.74287 -34.67480 -33.48397 -31.20073 -31.07765 -28.72762 -27.81322 -26.95704 -26.05519 -23.46551 -22.83031 -21.98516 -21.87043 -20.57665 -20.09322 -19.49304 -17.97949 -17.21815 -16.80849 -16.72480 -16.61050 -15.99395 -15.86208 -15.77506 -15.36943 -14.90500 -14.47874 -14.31198 -14.25185 -14.06742 -13.85637 -13.72243 -13.55493 -13.23081 -13.11680 -12.98523 -12.87521 -12.67056 -12.60327 -12.38344 -12.23926 -12.08760 -11.98835 -11.78385 -11.58637 -11.47646 -11.41148 -11.21936 -10.84774 -10.72042 -10.20595 -9.56555 -9.45170 -9.43043 -9.05998 -6.39870 0.90664 0.98027 1.40695 1.45967 1.61434 1.75781 1.78929 2.18155 2.30734 2.70823 3.53555 3.77144 3.86508 4.01693 4.12331 4.14347 4.20293 4.25346 4.31692 4.36749 4.42829 4.47926 4.54417 4.55853 4.64570 4.66910 4.69483 4.77982 4.84150 4.90932 4.93761 4.99330 5.00943 5.02715 5.07402 5.12027 5.25126 5.32106 5.39061 5.44943 5.49201 5.71227 5.76682 5.79174 5.83531 5.89939 5.98186 6.04459 6.28939 6.43292 6.48390 6.86344 7.01431 7.36393 8.07964 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.002790 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.195150 B =10033.056234 C =10908.561193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C -0.094 4.094 4 C -0.110 4.110 5 C -0.111 4.111 6 C -0.122 4.122 7 C 0.113 3.887 8 N -0.624 5.624 9 C 0.072 3.928 10 C 0.513 3.487 11 O -0.577 6.577 12 C -0.064 4.064 13 C -0.191 4.191 14 C -0.081 4.081 15 C -0.251 4.251 16 C -0.097 4.097 17 C -0.245 4.245 18 C 0.085 3.915 19 C -0.539 4.539 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.819 5.819 23 Si 1.107 2.893 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.252 1.252 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.110 0.890 48 H 0.083 0.917 49 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.180 -2.921 0.479 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.185 4.185 3 C -0.131 4.131 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.161 4.161 7 C -0.010 4.010 8 N -0.357 5.357 9 C -0.069 4.069 10 C 0.302 3.698 11 O -0.456 6.456 12 C -0.104 4.104 13 C -0.193 4.193 14 C -0.099 4.099 15 C -0.270 4.270 16 C -0.115 4.115 17 C -0.265 4.265 18 C 0.082 3.918 19 C -0.567 4.567 20 H 0.084 0.916 21 C -0.212 4.212 22 N -0.442 5.442 23 Si 0.925 3.075 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.176 1.176 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.127 0.873 44 H 0.110 0.890 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.128 0.872 48 H 0.102 0.898 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.168 -1.781 -0.548 21.250 hybrid contribution -0.085 -1.714 0.336 1.749 sum -21.253 -3.496 -0.213 21.540 Atomic orbital electron populations 1.24013 0.95796 1.02555 1.00919 1.23090 0.96479 0.98731 1.00180 1.20774 0.98141 0.95583 0.98578 1.21473 0.97514 0.97076 0.98667 1.21490 0.97600 0.98511 0.97310 1.21831 0.97687 0.96578 0.99997 1.21547 0.91591 0.98950 0.88891 1.48046 1.11199 1.62683 1.13793 1.22047 1.02398 0.99376 0.83108 1.21146 0.82539 0.76209 0.89883 1.90644 1.77423 1.47426 1.30063 1.20263 0.91236 1.03051 0.95834 1.19565 0.97177 0.94832 1.07705 1.20787 0.96361 0.94072 0.98705 1.20712 0.95912 0.99429 1.10935 1.20895 0.98546 0.93645 0.98424 1.21147 0.99908 0.95741 1.09664 1.17785 0.91593 0.93836 0.88538 1.20504 0.96095 0.93274 1.46876 0.91635 1.28235 0.91140 1.06585 0.95271 1.70553 1.26312 1.27685 1.19652 0.83141 0.77820 0.71014 0.75555 1.19280 1.20147 1.17587 0.87925 0.87805 0.87630 0.90621 0.91339 0.93172 0.91365 0.89913 0.92902 0.94849 0.90292 0.87721 0.93277 0.92012 0.88224 0.90262 0.87271 0.88964 0.86498 0.86308 0.87209 0.89833 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 14.32 67.78 0.97 -1.53 16 2 C -0.17 -2.46 9.52 25.65 0.24 -2.22 16 3 C -0.09 -1.38 5.66 29.85 0.17 -1.21 16 4 C -0.11 -1.82 5.20 30.59 0.16 -1.66 16 5 C -0.11 -1.98 5.21 30.59 0.16 -1.82 16 6 C -0.12 -2.71 5.54 30.59 0.17 -2.54 16 7 C 0.11 2.87 5.41 86.37 0.47 3.33 16 8 N -0.62 -18.22 2.87 -846.76 -2.43 -20.65 16 9 C 0.07 1.39 10.24 127.77 1.31 2.70 16 10 C 0.51 20.62 7.31 87.66 0.64 21.26 16 11 O -0.58 -29.22 15.61 -3.04 -0.05 -29.27 16 12 C -0.06 -2.54 3.73 29.10 0.11 -2.44 16 13 C -0.19 -9.39 4.43 -19.40 -0.09 -9.48 16 14 C -0.08 -3.70 9.66 22.22 0.21 -3.49 16 15 C -0.25 -11.47 10.05 22.46 0.23 -11.25 16 16 C -0.10 -4.78 10.02 22.22 0.22 -4.55 16 17 C -0.25 -13.65 7.95 22.73 0.18 -13.47 16 18 C 0.09 4.74 5.30 -21.29 -0.11 4.63 16 19 C -0.54 -29.81 8.08 23.46 0.19 -29.62 16 20 H 0.07 3.58 6.73 -2.91 -0.02 3.56 16 21 C 0.00 0.20 4.94 85.25 0.42 0.62 16 22 N -0.82 -45.49 12.31 21.82 0.27 -45.22 16 23 Si 1.11 45.39 30.00 68.60 2.06 47.44 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 27 H 0.10 1.14 7.84 -2.91 -0.02 1.11 16 28 H 0.10 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.11 1.55 8.06 -2.91 -0.02 1.52 16 30 H 0.08 0.96 7.79 -2.38 -0.02 0.95 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 1.92 8.07 -2.38 -0.02 1.90 16 39 H 0.05 1.58 7.42 -2.39 -0.02 1.57 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.10 1.25 8.07 -2.38 -0.02 1.24 16 42 H 0.08 1.44 6.44 -2.39 -0.02 1.42 16 43 H 0.11 3.44 7.31 -2.39 -0.02 3.43 16 44 H 0.09 3.67 7.02 -2.39 -0.02 3.65 16 45 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 46 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 47 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 48 H 0.08 4.87 6.49 -2.91 -0.02 4.85 16 49 H 0.28 16.38 6.68 -92.71 -0.62 15.76 16 Total: -1.00 -71.45 399.99 6.54 -64.91 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 1.04 Total: 35.52 kcal Atomic # 6 Polarization: -58.38 SS G_CDS: 5.65 Total: -52.73 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -2.16 Total: -65.88 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.05 Total: -29.27 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.06 Total: 47.44 kcal Total: -71.45 6.54 -64.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776953677.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.039 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds