Wall clock time and date at job start Tue Mar 31 2020 10:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 108.85649 * 2 1 4 4 C 1.54298 * 109.13474 * 241.18931 * 2 1 3 5 5 C 1.50880 * 110.23567 * 199.01265 * 4 2 1 6 6 C 1.52568 * 109.36038 * 91.80052 * 5 4 2 7 7 C 1.47102 * 114.32570 * 274.99378 * 6 5 4 8 8 H 1.09003 * 109.32114 * 302.53681 * 7 6 5 9 9 C 1.53001 * 109.32959 * 183.06094 * 7 6 5 10 10 C 1.54865 * 110.32480 * 62.79579 * 7 6 5 11 11 N 1.44576 * 109.59798 * 288.73701 * 10 7 6 12 12 C 1.34782 * 118.64492 * 270.70250 * 11 10 7 13 13 O 1.21278 * 120.00386 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99390 * 0.02562 * 12 11 10 15 15 C 1.50710 * 109.46690 * 179.97438 * 14 12 11 16 16 C 1.37636 * 120.12789 * 264.97769 * 15 14 12 17 17 C 1.38612 * 120.24661 * 180.02562 * 16 15 14 18 18 C 1.38657 * 120.50134 * 359.97438 * 17 16 15 19 19 C 1.37599 * 120.24922 * 0.02562 * 18 17 16 20 20 C 1.40698 * 120.12378 * 85.00250 * 15 14 12 21 21 C 1.41399 * 120.24445 * 359.95408 * 20 15 14 22 22 H 1.07993 * 120.00244 * 334.07397 * 21 20 15 23 23 C 1.39945 * 119.99601 * 154.07552 * 21 20 15 24 24 N 1.30820 * 120.00362 * 343.66228 * 23 21 20 25 25 Si 1.86800 * 119.99690 * 163.65926 * 23 21 20 26 26 H 1.48505 * 109.47363 * 60.00167 * 25 23 21 27 27 H 1.48502 * 109.47369 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47194 * 300.00080 * 25 23 21 29 29 H 1.09002 * 109.46613 * 301.31433 * 1 2 3 30 30 H 1.08999 * 109.47039 * 61.31307 * 1 2 3 31 31 H 1.09000 * 109.46870 * 181.31516 * 1 2 3 32 32 H 1.09003 * 109.36971 * 78.73871 * 4 2 1 33 33 H 1.08999 * 109.12779 * 319.13515 * 4 2 1 34 34 H 1.09002 * 109.49107 * 331.83751 * 5 4 2 35 35 H 1.09001 * 109.49229 * 211.76594 * 5 4 2 36 36 H 1.08994 * 108.51656 * 153.73648 * 6 5 4 37 37 H 1.09005 * 108.51347 * 36.23800 * 6 5 4 38 38 H 1.09001 * 109.46948 * 299.13200 * 9 7 6 39 39 H 1.09002 * 109.47117 * 59.12892 * 9 7 6 40 40 H 1.08998 * 109.47163 * 179.13193 * 9 7 6 41 41 H 1.08997 * 109.44968 * 168.69720 * 10 7 6 42 42 H 1.08995 * 109.44812 * 48.77212 * 10 7 6 43 43 H 1.09002 * 109.47249 * 60.00111 * 14 12 11 44 44 H 1.08991 * 109.47609 * 299.99613 * 14 12 11 45 45 H 1.08000 * 119.87445 * 0.02562 * 16 15 14 46 46 H 1.07997 * 119.75049 * 180.02562 * 17 16 15 47 47 H 1.07995 * 119.87730 * 180.28263 * 18 17 16 48 48 H 1.08003 * 120.12578 * 180.02562 * 19 18 17 49 49 H 0.97001 * 119.99960 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8823 1.0314 0.0000 4 6 2.0358 -0.7025 -1.2773 5 6 3.4713 -1.1328 -1.1026 6 6 3.5097 -2.5601 -0.5650 7 6 3.3972 -2.6596 0.8983 8 1 4.1982 -2.0835 1.3616 9 6 3.5248 -4.1256 1.3175 10 6 2.0295 -2.1084 1.3715 11 7 2.0093 -0.6702 1.2246 12 6 2.4407 0.0901 2.2505 13 8 2.4340 1.2990 2.1541 14 6 2.9314 -0.5621 3.5173 15 6 3.3536 0.5010 4.4986 16 6 4.6731 0.8850 4.5759 17 6 5.0642 1.8621 5.4779 18 6 4.1335 2.4639 6.3111 19 6 2.8090 2.0958 6.2510 20 6 2.4005 1.1045 5.3395 21 6 1.0421 0.7184 5.2685 22 1 0.6447 0.3073 4.3524 23 6 0.2127 0.8690 6.3855 24 7 0.7372 1.0566 7.5692 25 14 -1.6435 0.8023 6.1863 26 1 -2.0340 -0.5158 5.6247 27 1 -2.2905 0.9881 7.5100 28 1 -2.0817 1.8821 5.2658 29 1 -0.3632 0.5341 0.8780 30 1 -0.3633 0.4933 -0.9015 31 1 -0.3633 -1.0274 0.0236 32 1 1.9646 -0.0151 -2.1203 33 1 1.4171 -1.5785 -1.4719 34 1 3.9679 -0.4654 -0.3982 35 1 3.9827 -1.0926 -2.0644 36 1 4.4487 -3.0205 -0.8721 37 1 2.6901 -3.1212 -1.0139 38 1 2.7213 -4.7048 0.8627 39 1 4.4869 -4.5159 0.9856 40 1 3.4573 -4.2003 2.4028 41 1 1.8760 -2.3685 2.4187 42 1 1.2338 -2.5459 0.7687 43 1 3.7822 -1.2042 3.2895 44 1 2.1307 -1.1605 3.9517 45 1 5.4064 0.4231 3.9315 46 1 6.1016 2.1575 5.5316 47 1 4.4486 3.2274 7.0069 48 1 2.0857 2.5662 6.9006 49 1 0.1622 1.1614 8.3434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776958017.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:17 Heat of formation + Delta-G solvation = -38.458144 kcal Electronic energy + Delta-G solvation = -27819.913950 eV Core-core repulsion = 24324.471132 eV Total energy + Delta-G solvation = -3495.442817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.26143 -37.97458 -36.96139 -34.70488 -33.58935 -33.56797 -31.49299 -30.06932 -29.38660 -26.75905 -26.40460 -25.97861 -24.95668 -22.80485 -21.23279 -20.85242 -20.37496 -19.44423 -18.21197 -17.10762 -16.72517 -16.12297 -15.42038 -15.19360 -14.67263 -14.46015 -14.22418 -14.00923 -13.67501 -13.39525 -13.34648 -13.04833 -12.76327 -12.56582 -12.51203 -12.22108 -12.04470 -11.81103 -11.62667 -11.51977 -11.39862 -11.26708 -11.12868 -11.01399 -10.91635 -10.74409 -10.64337 -10.62954 -10.44930 -10.34922 -10.24054 -9.42475 -9.30265 -9.11092 -8.98958 -8.22268 -7.25536 -7.22899 -6.68699 -4.28844 2.84154 3.01713 3.08462 3.12061 3.32107 3.38065 3.48703 3.97217 4.52670 4.70937 4.71784 4.84590 4.92106 4.99257 5.24526 5.36163 5.42448 5.51292 5.53791 5.56636 5.61986 5.74483 5.78207 5.81854 5.83079 5.86851 5.89235 6.03328 6.07088 6.11378 6.12773 6.19729 6.24251 6.31278 6.35116 6.36193 6.43052 6.51728 6.56423 6.85761 7.04807 7.13849 7.35079 7.47982 7.69294 7.88986 7.99784 8.13045 8.18531 8.37277 8.70199 8.92573 8.97361 9.07353 10.25563 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012566 B = 0.004948 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.746231 B = 5657.030020 C = 6594.683021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.094 0.906 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.108 4.108 7 C -0.113 4.113 8 H 0.074 0.926 9 C -0.145 4.145 10 C 0.118 3.882 11 N -0.613 5.613 12 C 0.514 3.486 13 O -0.521 6.521 14 C -0.069 4.069 15 C -0.179 4.179 16 C -0.082 4.082 17 C -0.239 4.239 18 C -0.108 4.108 19 C -0.159 4.159 20 C 0.129 3.871 21 C -0.456 4.456 22 H 0.073 0.927 23 C 0.078 3.922 24 N -0.796 5.796 25 Si 0.901 3.099 26 H -0.266 1.266 27 H -0.279 1.279 28 H -0.265 1.265 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.116 0.884 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -9.194 -13.558 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.112 0.888 4 C -0.161 4.161 5 C -0.154 4.154 6 C -0.145 4.145 7 C -0.133 4.133 8 H 0.092 0.908 9 C -0.203 4.203 10 C -0.006 4.006 11 N -0.348 5.348 12 C 0.304 3.696 13 O -0.395 6.395 14 C -0.108 4.108 15 C -0.181 4.181 16 C -0.100 4.100 17 C -0.259 4.259 18 C -0.126 4.126 19 C -0.178 4.178 20 C 0.127 3.873 21 C -0.486 4.486 22 H 0.091 0.909 23 C -0.140 4.140 24 N -0.422 5.422 25 Si 0.726 3.274 26 H -0.191 1.191 27 H -0.204 1.204 28 H -0.189 1.189 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.134 0.866 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.691 -8.508 -13.358 15.852 hybrid contribution -0.872 -0.117 -0.027 0.880 sum -0.181 -8.625 -13.385 15.924 Atomic orbital electron populations 1.22165 0.95734 1.01732 1.02259 1.21390 0.93555 0.97927 0.83765 0.88771 1.21841 0.96636 1.00653 0.96936 1.21042 0.96654 0.96934 1.00791 1.20470 1.01656 0.96723 0.95699 1.20887 0.99000 0.96904 0.96490 0.90783 1.21801 1.01526 0.95156 1.01797 1.21552 0.96229 0.80694 1.02129 1.47849 1.65720 1.06007 1.15224 1.21289 0.76165 0.87594 0.84571 1.90655 1.53300 1.14434 1.81150 1.20323 1.00920 0.97951 0.91614 1.19095 0.93099 1.02444 1.03479 1.20283 0.94642 0.97452 0.97634 1.20292 0.97349 1.04608 1.03616 1.20664 0.94363 0.99156 0.98430 1.21282 0.94470 0.99472 1.02614 1.17326 0.92142 0.88547 0.89307 1.19420 0.94060 1.37374 0.97706 0.90921 1.25857 1.00911 0.92537 0.94648 1.69812 1.37644 1.35519 0.99200 0.86480 0.82671 0.79860 0.78371 1.19110 1.20355 1.18918 0.91960 0.92125 0.92846 0.91244 0.91783 0.91400 0.92246 0.92716 0.92491 0.92747 0.92674 0.92086 0.89936 0.91119 0.90772 0.88774 0.89905 0.89751 0.89655 0.86605 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.35 37.16 0.35 -1.71 16 2 C 0.14 1.89 2.64 -66.65 -0.18 1.71 16 3 H 0.09 1.54 6.95 -51.93 -0.36 1.18 16 4 C -0.12 -1.28 5.10 -27.12 -0.14 -1.42 16 5 C -0.12 -1.24 5.51 -28.02 -0.15 -1.40 16 6 C -0.11 -1.04 4.38 -29.78 -0.13 -1.17 16 7 C -0.11 -1.20 2.49 -92.47 -0.23 -1.43 16 8 H 0.07 0.92 7.28 -51.93 -0.38 0.54 16 9 C -0.14 -1.29 9.10 37.16 0.34 -0.95 16 10 C 0.12 1.44 4.44 -4.09 -0.02 1.43 16 11 N -0.61 -9.36 1.83 -164.84 -0.30 -9.66 16 12 C 0.51 10.24 7.25 -10.98 -0.08 10.16 16 13 O -0.52 -12.67 15.31 5.56 0.09 -12.59 16 14 C -0.07 -1.37 3.68 -29.03 -0.11 -1.48 16 15 C -0.18 -4.39 4.43 -103.91 -0.46 -4.85 16 16 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 17 C -0.24 -5.68 10.05 -39.29 -0.39 -6.08 16 18 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 19 C -0.16 -4.32 8.68 -38.87 -0.34 -4.66 16 20 C 0.13 3.50 5.56 -106.82 -0.59 2.91 16 21 C -0.46 -12.15 8.14 -37.74 -0.31 -12.45 16 22 H 0.07 1.90 6.67 -52.49 -0.35 1.55 16 23 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 24 N -0.80 -20.77 10.97 55.55 0.61 -20.16 16 25 Si 0.90 19.13 29.59 -169.99 -5.03 14.10 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.61 7.86 -51.93 -0.41 0.21 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.61 7.16 -51.93 -0.37 0.23 16 34 H 0.07 0.90 7.49 -51.93 -0.39 0.51 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.49 8.11 -51.93 -0.42 0.07 16 37 H 0.06 0.50 7.36 -51.93 -0.38 0.12 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 1.04 6.22 -51.93 -0.32 0.72 16 42 H 0.07 0.75 7.79 -51.93 -0.40 0.35 16 43 H 0.07 1.28 7.00 -51.93 -0.36 0.91 16 44 H 0.09 1.88 6.23 -51.93 -0.32 1.55 16 45 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 46 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 47 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 48 H 0.12 3.23 6.22 -52.48 -0.33 2.90 16 49 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -30.19 376.46 -10.44 -40.63 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.16 Total: 6.91 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -3.31 Total: -24.90 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: 0.31 Total: -29.82 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.19 -10.44 -40.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776958017.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.172 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds