Wall clock time and date at job start Tue Mar 31 2020 10:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 108.85649 * 2 1 4 4 C 1.54298 * 109.13474 * 241.18931 * 2 1 3 5 5 C 1.50880 * 110.23567 * 199.01265 * 4 2 1 6 6 C 1.52568 * 109.36038 * 91.80052 * 5 4 2 7 7 C 1.47102 * 114.32570 * 274.99378 * 6 5 4 8 8 H 1.09003 * 109.32114 * 302.53681 * 7 6 5 9 9 C 1.53001 * 109.32959 * 183.06094 * 7 6 5 10 10 C 1.54865 * 110.32480 * 62.79579 * 7 6 5 11 11 N 1.44576 * 109.59798 * 288.73701 * 10 7 6 12 12 C 1.34782 * 118.64492 * 270.70250 * 11 10 7 13 13 O 1.21278 * 120.00386 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99390 * 0.02562 * 12 11 10 15 15 C 1.50710 * 109.46690 * 179.97438 * 14 12 11 16 16 C 1.37636 * 120.12789 * 264.97769 * 15 14 12 17 17 C 1.38612 * 120.24661 * 180.02562 * 16 15 14 18 18 C 1.38657 * 120.50134 * 359.97438 * 17 16 15 19 19 C 1.37599 * 120.24922 * 0.02562 * 18 17 16 20 20 C 1.40698 * 120.12378 * 85.00250 * 15 14 12 21 21 C 1.41399 * 120.24445 * 359.95408 * 20 15 14 22 22 H 1.07993 * 120.00244 * 334.07397 * 21 20 15 23 23 C 1.39945 * 119.99601 * 154.07552 * 21 20 15 24 24 N 1.30820 * 120.00362 * 343.66228 * 23 21 20 25 25 Si 1.86800 * 119.99690 * 163.65926 * 23 21 20 26 26 H 1.48505 * 109.47363 * 60.00167 * 25 23 21 27 27 H 1.48502 * 109.47369 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47194 * 300.00080 * 25 23 21 29 29 H 1.09002 * 109.46613 * 301.31433 * 1 2 3 30 30 H 1.08999 * 109.47039 * 61.31307 * 1 2 3 31 31 H 1.09000 * 109.46870 * 181.31516 * 1 2 3 32 32 H 1.09003 * 109.36971 * 78.73871 * 4 2 1 33 33 H 1.08999 * 109.12779 * 319.13515 * 4 2 1 34 34 H 1.09002 * 109.49107 * 331.83751 * 5 4 2 35 35 H 1.09001 * 109.49229 * 211.76594 * 5 4 2 36 36 H 1.08994 * 108.51656 * 153.73648 * 6 5 4 37 37 H 1.09005 * 108.51347 * 36.23800 * 6 5 4 38 38 H 1.09001 * 109.46948 * 299.13200 * 9 7 6 39 39 H 1.09002 * 109.47117 * 59.12892 * 9 7 6 40 40 H 1.08998 * 109.47163 * 179.13193 * 9 7 6 41 41 H 1.08997 * 109.44968 * 168.69720 * 10 7 6 42 42 H 1.08995 * 109.44812 * 48.77212 * 10 7 6 43 43 H 1.09002 * 109.47249 * 60.00111 * 14 12 11 44 44 H 1.08991 * 109.47609 * 299.99613 * 14 12 11 45 45 H 1.08000 * 119.87445 * 0.02562 * 16 15 14 46 46 H 1.07997 * 119.75049 * 180.02562 * 17 16 15 47 47 H 1.07995 * 119.87730 * 180.28263 * 18 17 16 48 48 H 1.08003 * 120.12578 * 180.02562 * 19 18 17 49 49 H 0.97001 * 119.99960 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8823 1.0314 0.0000 4 6 2.0358 -0.7025 -1.2773 5 6 3.4713 -1.1328 -1.1026 6 6 3.5097 -2.5601 -0.5650 7 6 3.3972 -2.6596 0.8983 8 1 4.1982 -2.0835 1.3616 9 6 3.5248 -4.1256 1.3175 10 6 2.0295 -2.1084 1.3715 11 7 2.0093 -0.6702 1.2246 12 6 2.4407 0.0901 2.2505 13 8 2.4340 1.2990 2.1541 14 6 2.9314 -0.5621 3.5173 15 6 3.3536 0.5010 4.4986 16 6 4.6731 0.8850 4.5759 17 6 5.0642 1.8621 5.4779 18 6 4.1335 2.4639 6.3111 19 6 2.8090 2.0958 6.2510 20 6 2.4005 1.1045 5.3395 21 6 1.0421 0.7184 5.2685 22 1 0.6447 0.3073 4.3524 23 6 0.2127 0.8690 6.3855 24 7 0.7372 1.0566 7.5692 25 14 -1.6435 0.8023 6.1863 26 1 -2.0340 -0.5158 5.6247 27 1 -2.2905 0.9881 7.5100 28 1 -2.0817 1.8821 5.2658 29 1 -0.3632 0.5341 0.8780 30 1 -0.3633 0.4933 -0.9015 31 1 -0.3633 -1.0274 0.0236 32 1 1.9646 -0.0151 -2.1203 33 1 1.4171 -1.5785 -1.4719 34 1 3.9679 -0.4654 -0.3982 35 1 3.9827 -1.0926 -2.0644 36 1 4.4487 -3.0205 -0.8721 37 1 2.6901 -3.1212 -1.0139 38 1 2.7213 -4.7048 0.8627 39 1 4.4869 -4.5159 0.9856 40 1 3.4573 -4.2003 2.4028 41 1 1.8760 -2.3685 2.4187 42 1 1.2338 -2.5459 0.7687 43 1 3.7822 -1.2042 3.2895 44 1 2.1307 -1.1605 3.9517 45 1 5.4064 0.4231 3.9315 46 1 6.1016 2.1575 5.5316 47 1 4.4486 3.2274 7.0069 48 1 2.0857 2.5662 6.9006 49 1 0.1622 1.1614 8.3434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776958017.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:16 Heat of formation + Delta-G solvation = -52.278771 kcal Electronic energy + Delta-G solvation = -27820.513257 eV Core-core repulsion = 24324.471132 eV Total energy + Delta-G solvation = -3496.042125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.54293 -39.57633 -38.51074 -35.73010 -35.50235 -34.78806 -33.18260 -31.36805 -31.08365 -28.49368 -27.23327 -27.07079 -26.83877 -23.83344 -22.86211 -22.53363 -21.23899 -21.06336 -19.49495 -19.04954 -18.09404 -17.41717 -17.15119 -16.46023 -16.25505 -15.74923 -15.56146 -15.31438 -15.12034 -14.95282 -14.55272 -14.37818 -14.18690 -13.89352 -13.55904 -13.42288 -13.36143 -13.15502 -12.93544 -12.91982 -12.81666 -12.74216 -12.59584 -12.49391 -12.37799 -12.15423 -12.11556 -11.69708 -11.50137 -11.34551 -11.27082 -11.23043 -11.10853 -11.03603 -10.59773 -9.47991 -9.23661 -9.16058 -8.60063 -6.29748 0.99286 1.12564 1.33478 1.43879 1.52571 1.83814 2.18185 2.19273 2.77541 3.56986 3.75431 3.87219 3.99187 4.01491 4.08206 4.10259 4.28989 4.37687 4.40109 4.49480 4.54913 4.56330 4.63535 4.68509 4.73149 4.75326 4.76696 4.84517 4.95147 4.97593 5.01517 5.06904 5.08953 5.18061 5.19286 5.24826 5.30569 5.35722 5.38162 5.42102 5.51048 5.53975 5.58202 5.76522 5.87202 6.03105 6.15657 6.20331 6.41624 6.55214 6.73102 6.98853 7.10498 7.43178 8.36428 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012566 B = 0.004948 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.746231 B = 5657.030020 C = 6594.683021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.059 0.941 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.107 4.107 7 C -0.106 4.106 8 H 0.051 0.949 9 C -0.141 4.141 10 C 0.108 3.892 11 N -0.600 5.600 12 C 0.513 3.487 13 O -0.578 6.578 14 C -0.062 4.062 15 C -0.187 4.187 16 C -0.093 4.093 17 C -0.241 4.241 18 C -0.117 4.117 19 C -0.193 4.193 20 C 0.096 3.904 21 C -0.482 4.482 22 H 0.067 0.933 23 C 0.038 3.962 24 N -0.825 5.825 25 Si 0.969 3.031 26 H -0.253 1.253 27 H -0.265 1.265 28 H -0.272 1.272 29 H 0.025 0.975 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.097 0.903 49 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -11.700 -15.828 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 H 0.077 0.923 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.144 4.144 7 C -0.126 4.126 8 H 0.070 0.930 9 C -0.199 4.199 10 C -0.015 4.015 11 N -0.332 5.332 12 C 0.303 3.697 13 O -0.457 6.457 14 C -0.102 4.102 15 C -0.189 4.189 16 C -0.111 4.111 17 C -0.261 4.261 18 C -0.135 4.135 19 C -0.212 4.212 20 C 0.094 3.906 21 C -0.511 4.511 22 H 0.085 0.915 23 C -0.177 4.177 24 N -0.451 5.451 25 Si 0.790 3.210 26 H -0.176 1.176 27 H -0.189 1.189 28 H -0.197 1.197 29 H 0.045 0.955 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.124 0.876 48 H 0.115 0.885 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.431 -11.070 -15.649 19.173 hybrid contribution -0.681 0.658 0.632 1.138 sum -0.251 -10.412 -15.017 18.276 Atomic orbital electron populations 1.22121 0.94736 1.02701 1.01735 1.21564 0.94330 0.96693 0.84619 0.92255 1.21807 0.96721 1.01452 0.94996 1.21054 0.96516 0.96982 1.00897 1.20462 1.03089 0.96157 0.94723 1.20814 0.96823 0.97705 0.97257 0.93022 1.21772 1.02710 0.93788 1.01583 1.21870 0.98392 0.78629 1.02582 1.47835 1.63732 1.07145 1.14506 1.21177 0.76129 0.86996 0.85383 1.90628 1.56120 1.16684 1.82289 1.20270 1.01880 0.96965 0.91046 1.19577 0.93274 1.02709 1.03307 1.20698 0.95020 0.97501 0.97910 1.20696 0.98629 1.03998 1.02728 1.20940 0.93802 0.99689 0.99101 1.21294 0.95350 1.00781 1.03783 1.17720 0.93247 0.89259 0.90359 1.19539 0.94669 1.38871 0.98047 0.91481 1.26636 1.05322 0.91755 0.93967 1.69870 1.39412 1.35942 0.99916 0.85461 0.76873 0.80020 0.78665 1.17648 1.18872 1.19738 0.95533 0.89806 0.90839 0.89786 0.89459 0.94717 0.90494 0.91621 0.90523 0.91132 0.91757 0.92679 0.90563 0.88528 0.88008 0.88996 0.87022 0.86698 0.87596 0.88499 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.35 71.98 0.67 -3.11 16 2 C 0.13 3.53 2.64 45.22 0.12 3.65 16 3 H 0.06 2.03 6.95 -2.39 -0.02 2.01 16 4 C -0.11 -2.03 5.10 30.35 0.15 -1.87 16 5 C -0.12 -2.21 5.51 29.76 0.16 -2.04 16 6 C -0.11 -1.69 4.38 28.62 0.13 -1.57 16 7 C -0.11 -2.00 2.49 -11.99 -0.03 -2.03 16 8 H 0.05 1.21 7.28 -2.39 -0.02 1.20 16 9 C -0.14 -2.06 9.10 71.98 0.66 -1.41 16 10 C 0.11 2.43 4.44 87.38 0.39 2.82 16 11 N -0.60 -18.13 1.83 -793.81 -1.45 -19.57 16 12 C 0.51 21.04 7.25 87.66 0.64 21.68 16 13 O -0.58 -29.62 15.31 -3.02 -0.05 -29.67 16 14 C -0.06 -2.54 3.68 29.10 0.11 -2.43 16 15 C -0.19 -9.39 4.43 -19.40 -0.09 -9.48 16 16 C -0.09 -4.39 9.66 22.22 0.21 -4.18 16 17 C -0.24 -11.39 10.05 22.46 0.23 -11.17 16 18 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 19 C -0.19 -10.96 8.68 22.73 0.20 -10.77 16 20 C 0.10 5.46 5.56 -21.29 -0.12 5.34 16 21 C -0.48 -26.80 8.14 23.46 0.19 -26.61 16 22 H 0.07 3.67 6.67 -2.91 -0.02 3.65 16 23 C 0.04 1.97 5.16 85.26 0.44 2.41 16 24 N -0.83 -44.57 10.97 21.83 0.24 -44.33 16 25 Si 0.97 39.98 29.59 68.60 2.03 42.01 16 26 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 27 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.48 7.86 -2.39 -0.02 1.46 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.23 7.16 -2.39 -0.02 1.21 16 34 H 0.03 0.89 7.49 -2.39 -0.02 0.87 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 0.93 8.11 -2.39 -0.02 0.91 16 37 H 0.08 0.96 7.36 -2.38 -0.02 0.94 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 1.83 6.22 -2.39 -0.01 1.82 16 42 H 0.10 1.71 7.79 -2.39 -0.02 1.69 16 43 H 0.10 3.47 7.00 -2.39 -0.02 3.46 16 44 H 0.09 3.76 6.23 -2.39 -0.01 3.75 16 45 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 46 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 47 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 48 H 0.10 5.74 6.22 -2.91 -0.02 5.73 16 49 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 Total: -1.00 -70.15 376.46 5.97 -64.18 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.92 Total: 33.86 kcal Atomic # 6 Polarization: -50.76 SS G_CDS: 4.28 Total: -46.48 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -1.21 Total: -63.90 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.05 Total: -29.67 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -70.15 5.97 -64.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776958017.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.900 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds