Wall clock time and date at job start Tue Mar 31 2020 12:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99929 * 2 1 4 4 C 1.52993 * 109.47386 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47235 * 64.99536 * 4 3 2 6 6 C 1.46499 * 120.00326 * 270.00650 * 5 4 3 7 7 C 1.50703 * 109.46965 * 269.99456 * 6 5 4 8 8 H 1.08005 * 119.99854 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99819 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00375 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99756 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46951 * 60.00595 * 11 9 7 13 13 H 1.48501 * 109.46805 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47170 * 300.00070 * 11 9 7 15 15 C 1.34781 * 119.99419 * 90.00320 * 5 4 3 16 16 O 1.21273 * 120.00217 * 0.02562 * 15 5 4 17 17 C 1.50698 * 119.99762 * 180.02562 * 15 5 4 18 18 H 1.09004 * 109.47315 * 345.00414 * 17 15 5 19 19 F 1.39907 * 109.47190 * 104.99715 * 17 15 5 20 20 C 1.53002 * 109.47357 * 224.99953 * 17 15 5 21 21 C 1.52996 * 109.47201 * 175.00178 * 20 17 15 22 22 C 1.53002 * 109.46891 * 175.00241 * 21 20 17 23 23 C 1.52996 * 109.46891 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.47328 * 299.99597 * 23 22 21 25 25 C 1.52997 * 109.47060 * 60.00126 * 24 23 22 26 26 C 1.52997 * 109.46975 * 294.99833 * 21 20 17 27 27 H 1.09002 * 109.47244 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46646 * 299.99675 * 1 2 3 29 29 H 1.08994 * 109.47189 * 59.99887 * 1 2 3 30 30 H 1.08999 * 109.47094 * 60.00433 * 3 2 1 31 31 H 1.08994 * 109.47241 * 300.00493 * 3 2 1 32 32 H 1.09003 * 109.47491 * 305.00359 * 4 3 2 33 33 H 1.08996 * 109.47867 * 184.99985 * 4 3 2 34 34 H 1.08996 * 109.47301 * 29.99788 * 6 5 4 35 35 H 1.08998 * 109.46756 * 149.99794 * 6 5 4 36 36 H 0.96993 * 120.00652 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.46646 * 54.99822 * 20 17 15 38 38 H 1.09001 * 109.46843 * 295.00108 * 20 17 15 39 39 H 1.09001 * 109.47372 * 55.00205 * 21 20 17 40 40 H 1.08992 * 109.47056 * 59.99654 * 22 21 20 41 41 H 1.09004 * 109.47006 * 299.99770 * 22 21 20 42 42 H 1.09004 * 109.47368 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47372 * 59.99964 * 23 22 21 44 44 H 1.09002 * 109.47398 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.47194 * 300.00476 * 24 23 22 46 46 H 1.08998 * 109.47533 * 59.99948 * 25 24 23 47 47 H 1.08996 * 109.47853 * 180.02562 * 25 24 23 48 48 H 1.09001 * 109.47375 * 300.00370 * 26 21 20 49 49 H 1.09000 * 109.47140 * 60.00388 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2196 -0.5459 -0.6538 9 6 5.8603 -2.6288 -0.9518 10 7 4.9852 -3.5444 -1.3058 11 14 7.5903 -3.1318 -0.4580 12 1 7.8531 -2.6964 0.9372 13 1 7.7216 -4.6081 -0.5494 14 1 8.5715 -2.4906 -1.3699 15 6 4.2615 1.3338 -2.3218 16 8 4.1547 2.5395 -2.2471 17 6 4.7138 0.6958 -3.6099 18 1 5.0048 -0.3376 -3.4210 19 9 3.6663 0.7231 -4.5369 20 6 5.9101 1.4684 -4.1693 21 6 6.4473 0.7496 -5.4084 22 6 7.5623 1.5857 -6.0397 23 6 8.0999 0.8665 -7.2786 24 6 8.6545 -0.5008 -6.8741 25 6 7.5396 -1.3369 -6.2427 26 6 7.0017 -0.6180 -5.0044 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5683 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.3852 -1.3629 -0.6734 35 1 3.9120 -1.2113 -2.3669 36 1 5.2378 -4.4809 -1.3103 37 1 6.6931 1.5230 -3.4129 38 1 5.5967 2.4763 -4.4412 39 1 5.6406 0.6161 -6.1293 40 1 8.3689 1.7191 -5.3189 41 1 7.1673 2.5600 -6.3275 42 1 8.8940 1.4624 -7.7286 43 1 7.2935 0.7327 -7.9996 44 1 9.0379 -1.0130 -7.7566 45 1 9.4610 -0.3670 -6.1530 46 1 6.7331 -1.4708 -6.9636 47 1 7.9347 -2.3109 -5.9541 48 1 7.8084 -0.4845 -4.2836 49 1 6.2074 -1.2137 -4.5547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793416716.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:29 Heat of formation + Delta-G solvation = -165.236302 kcal Electronic energy + Delta-G solvation = -28517.699438 eV Core-core repulsion = 24585.989882 eV Total energy + Delta-G solvation = -3931.709556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -47.25591 -39.22119 -38.44068 -37.36884 -35.02251 -33.27908 -32.63691 -30.61425 -30.22846 -28.39249 -27.08373 -25.97300 -24.37948 -22.94687 -22.53265 -22.05931 -20.57777 -19.50693 -18.56507 -17.12721 -16.54321 -16.23219 -15.93238 -15.53522 -15.27168 -15.11120 -14.78187 -14.56569 -14.41911 -14.00623 -13.95043 -13.63813 -13.48703 -13.29243 -12.56252 -12.34365 -12.11863 -12.06590 -11.97984 -11.74305 -11.70264 -11.54057 -11.52303 -11.28974 -10.98441 -10.94319 -10.88944 -10.75494 -10.69982 -10.43770 -10.23136 -10.12796 -9.86514 -9.78394 -9.60131 -9.39384 -8.95650 -8.52719 -7.79319 -6.17273 -4.26019 3.12510 3.23342 3.29041 3.31427 3.70079 4.14531 4.32262 4.78409 4.82400 4.89483 5.10443 5.13414 5.15971 5.26331 5.38237 5.45067 5.49388 5.50481 5.62042 5.63393 5.65837 5.66272 5.70219 5.71645 5.74318 5.78143 5.82589 5.86480 6.02708 6.10316 6.15656 6.24364 6.27465 6.32260 6.32674 6.41988 6.44072 6.53239 6.69107 6.75941 6.77282 7.24679 7.46574 7.51902 7.77514 8.04848 8.24086 8.71791 8.88046 9.41629 10.89103 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.010415 B = 0.005319 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.681789 B = 5262.752743 C = 7092.043946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.120 3.880 5 N -0.577 5.577 6 C 0.234 3.766 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.070 3.930 10 N -0.885 5.885 11 Si 0.892 3.108 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.495 3.505 16 O -0.565 6.565 17 C 0.072 3.928 18 H 0.128 0.872 19 F -0.202 7.202 20 C -0.124 4.124 21 C -0.085 4.085 22 C -0.112 4.112 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.121 4.121 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.035 0.965 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 6.247 -5.494 8.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.307 5.307 6 C 0.115 3.885 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.134 4.134 10 N -0.523 5.523 11 Si 0.719 3.281 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.281 3.719 16 O -0.445 6.445 17 C 0.034 3.966 18 H 0.145 0.855 19 F -0.183 7.183 20 C -0.162 4.162 21 C -0.103 4.103 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.159 4.159 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.484 6.459 -5.478 8.483 hybrid contribution 0.578 -0.273 0.357 0.732 sum 1.062 6.186 -5.121 8.100 Atomic orbital electron populations 1.22684 0.82078 1.02446 0.99189 1.88050 1.18754 1.27346 1.95210 1.23003 0.95131 0.85032 0.99848 1.21382 0.91249 0.99667 0.88074 1.48244 1.62256 1.10164 1.10001 1.19592 0.97685 0.72463 0.98767 1.21458 0.97050 0.92502 1.47258 0.92155 1.24897 0.97394 0.96288 0.94819 1.69919 1.34338 1.01281 1.46764 0.86646 0.84559 0.77502 0.79344 1.20166 1.21136 1.19938 1.20837 0.77895 0.87017 0.86156 1.90589 1.54869 1.14615 1.84477 1.21868 0.85287 1.04581 0.84888 0.85464 1.92793 1.60258 1.98120 1.67118 1.21994 0.96417 0.99554 0.98265 1.21134 0.97593 0.95166 0.96454 1.21552 0.98095 0.98190 0.97106 1.21514 1.00092 0.96218 0.97654 1.21546 0.98283 0.95795 1.00066 1.21501 0.97977 0.98475 0.97584 1.21681 1.01343 0.95488 0.97352 0.89814 0.94716 0.94593 0.93090 0.93367 0.89184 0.89379 0.92752 0.94752 0.92422 0.90010 0.90403 0.90789 0.91960 0.92169 0.92478 0.92147 0.92571 0.92149 0.92181 0.92062 0.91654 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.82 9.53 -35.23 -0.34 -7.15 16 3 C 0.05 0.80 6.28 37.15 0.23 1.03 16 4 C 0.12 2.22 5.81 -4.04 -0.02 2.20 16 5 N -0.58 -12.37 2.42 -175.06 -0.42 -12.79 16 6 C 0.23 5.62 4.58 -5.19 -0.02 5.60 16 7 C -0.54 -13.79 9.07 -34.44 -0.31 -14.10 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -24.05 13.29 55.43 0.74 -23.32 16 11 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 13 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 C 0.50 10.62 7.01 -10.98 -0.08 10.55 16 16 O -0.56 -12.79 16.18 5.56 0.09 -12.70 16 17 C 0.07 1.42 3.03 -27.88 -0.08 1.34 16 18 H 0.13 2.66 3.80 -51.93 -0.20 2.46 16 19 F -0.20 -4.08 16.66 2.25 0.04 -4.04 16 20 C -0.12 -2.08 4.16 -26.73 -0.11 -2.19 16 21 C -0.08 -1.24 2.15 -90.62 -0.20 -1.43 16 22 C -0.11 -1.38 5.20 -26.73 -0.14 -1.52 16 23 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 24 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 25 C -0.12 -1.56 5.92 -26.76 -0.16 -1.72 16 26 C -0.12 -1.87 4.96 -26.76 -0.13 -2.00 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.66 8.07 -51.93 -0.42 1.24 16 33 H 0.09 1.55 7.42 -51.93 -0.39 1.16 16 34 H 0.05 1.41 7.11 -51.93 -0.37 1.04 16 35 H 0.03 0.87 6.23 -51.93 -0.32 0.55 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 39 H 0.07 1.10 7.82 -51.93 -0.41 0.70 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.07 1.31 6.46 -51.93 -0.34 0.98 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -28.61 388.65 -8.13 -36.74 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.74 Total: 4.26 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.33 Total: -1.96 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.31 Total: -36.11 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.25 Total: -19.85 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.04 Total: -4.04 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.61 -8.13 -36.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793416716.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.497 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds