Wall clock time and date at job start Tue Mar 31 2020 12:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99929 * 2 1 4 4 C 1.52993 * 109.47386 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47235 * 64.99536 * 4 3 2 6 6 C 1.46499 * 120.00326 * 270.00650 * 5 4 3 7 7 C 1.50703 * 109.46965 * 269.99456 * 6 5 4 8 8 H 1.08005 * 119.99854 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99819 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00375 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99756 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46951 * 60.00595 * 11 9 7 13 13 H 1.48501 * 109.46805 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47170 * 300.00070 * 11 9 7 15 15 C 1.34781 * 119.99419 * 90.00320 * 5 4 3 16 16 O 1.21273 * 120.00217 * 0.02562 * 15 5 4 17 17 C 1.50698 * 119.99762 * 180.02562 * 15 5 4 18 18 H 1.09004 * 109.47315 * 345.00414 * 17 15 5 19 19 F 1.39907 * 109.47190 * 104.99715 * 17 15 5 20 20 C 1.53002 * 109.47357 * 224.99953 * 17 15 5 21 21 C 1.52996 * 109.47201 * 175.00178 * 20 17 15 22 22 C 1.53002 * 109.46891 * 175.00241 * 21 20 17 23 23 C 1.52996 * 109.46891 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.47328 * 299.99597 * 23 22 21 25 25 C 1.52997 * 109.47060 * 60.00126 * 24 23 22 26 26 C 1.52997 * 109.46975 * 294.99833 * 21 20 17 27 27 H 1.09002 * 109.47244 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46646 * 299.99675 * 1 2 3 29 29 H 1.08994 * 109.47189 * 59.99887 * 1 2 3 30 30 H 1.08999 * 109.47094 * 60.00433 * 3 2 1 31 31 H 1.08994 * 109.47241 * 300.00493 * 3 2 1 32 32 H 1.09003 * 109.47491 * 305.00359 * 4 3 2 33 33 H 1.08996 * 109.47867 * 184.99985 * 4 3 2 34 34 H 1.08996 * 109.47301 * 29.99788 * 6 5 4 35 35 H 1.08998 * 109.46756 * 149.99794 * 6 5 4 36 36 H 0.96993 * 120.00652 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.46646 * 54.99822 * 20 17 15 38 38 H 1.09001 * 109.46843 * 295.00108 * 20 17 15 39 39 H 1.09001 * 109.47372 * 55.00205 * 21 20 17 40 40 H 1.08992 * 109.47056 * 59.99654 * 22 21 20 41 41 H 1.09004 * 109.47006 * 299.99770 * 22 21 20 42 42 H 1.09004 * 109.47368 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47372 * 59.99964 * 23 22 21 44 44 H 1.09002 * 109.47398 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.47194 * 300.00476 * 24 23 22 46 46 H 1.08998 * 109.47533 * 59.99948 * 25 24 23 47 47 H 1.08996 * 109.47853 * 180.02562 * 25 24 23 48 48 H 1.09001 * 109.47375 * 300.00370 * 26 21 20 49 49 H 1.09000 * 109.47140 * 60.00388 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2196 -0.5459 -0.6538 9 6 5.8603 -2.6288 -0.9518 10 7 4.9852 -3.5444 -1.3058 11 14 7.5903 -3.1318 -0.4580 12 1 7.8531 -2.6964 0.9372 13 1 7.7216 -4.6081 -0.5494 14 1 8.5715 -2.4906 -1.3699 15 6 4.2615 1.3338 -2.3218 16 8 4.1547 2.5395 -2.2471 17 6 4.7138 0.6958 -3.6099 18 1 5.0048 -0.3376 -3.4210 19 9 3.6663 0.7231 -4.5369 20 6 5.9101 1.4684 -4.1693 21 6 6.4473 0.7496 -5.4084 22 6 7.5623 1.5857 -6.0397 23 6 8.0999 0.8665 -7.2786 24 6 8.6545 -0.5008 -6.8741 25 6 7.5396 -1.3369 -6.2427 26 6 7.0017 -0.6180 -5.0044 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5683 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.3852 -1.3629 -0.6734 35 1 3.9120 -1.2113 -2.3669 36 1 5.2378 -4.4809 -1.3103 37 1 6.6931 1.5230 -3.4129 38 1 5.5967 2.4763 -4.4412 39 1 5.6406 0.6161 -6.1293 40 1 8.3689 1.7191 -5.3189 41 1 7.1673 2.5600 -6.3275 42 1 8.8940 1.4624 -7.7286 43 1 7.2935 0.7327 -7.9996 44 1 9.0379 -1.0130 -7.7566 45 1 9.4610 -0.3670 -6.1530 46 1 6.7331 -1.4708 -6.9636 47 1 7.9347 -2.3109 -5.9541 48 1 7.8084 -0.4845 -4.2836 49 1 6.2074 -1.2137 -4.5547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793416716.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:27 Heat of formation + Delta-G solvation = -179.285811 kcal Electronic energy + Delta-G solvation = -28518.308670 eV Core-core repulsion = 24585.989882 eV Total energy + Delta-G solvation = -3932.318788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.89935 -40.88773 -39.57386 -38.74105 -36.79025 -34.69018 -34.42658 -31.81926 -31.56145 -29.80299 -28.88765 -27.21511 -25.76308 -24.87114 -23.74949 -23.29233 -21.76813 -20.65060 -20.21139 -18.82555 -18.45804 -17.87096 -17.32835 -16.91892 -16.84563 -16.50247 -16.19954 -16.13551 -15.87688 -15.19595 -15.10596 -15.02547 -14.84667 -14.76195 -14.23563 -13.90480 -13.69535 -13.42080 -13.31314 -13.13161 -13.09456 -12.94375 -12.83570 -12.75939 -12.65028 -12.55210 -12.15704 -12.07922 -11.96503 -11.83060 -11.80519 -11.69902 -11.31859 -10.98274 -10.79256 -10.76034 -10.63794 -10.45823 -9.57456 -8.18449 -6.34335 1.38794 1.43701 1.45318 1.52043 2.05820 2.41879 2.89700 3.12378 3.35362 3.49304 3.68050 3.80570 3.93101 4.04296 4.07953 4.10958 4.17803 4.33367 4.37714 4.45318 4.50027 4.51138 4.52673 4.57470 4.58995 4.64368 4.68049 4.81575 4.81705 4.83158 4.90532 4.93583 5.00758 5.08528 5.21593 5.26414 5.29651 5.32721 5.34605 5.43386 5.50930 5.59842 5.63248 5.77524 6.03807 6.23233 6.44339 6.76656 7.07001 7.37728 8.87496 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.010415 B = 0.005319 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.681789 B = 5262.752743 C = 7092.043946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.054 3.946 4 C 0.112 3.888 5 N -0.580 5.580 6 C 0.255 3.745 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.028 3.972 10 N -0.916 5.916 11 Si 0.950 3.050 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.490 3.510 16 O -0.576 6.576 17 C 0.074 3.926 18 H 0.111 0.889 19 F -0.206 7.206 20 C -0.117 4.117 21 C -0.078 4.078 22 C -0.109 4.109 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.120 4.120 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.032 0.968 35 H 0.016 0.984 36 H 0.268 0.732 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 7.122 -5.919 9.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.023 4.023 4 C -0.010 4.010 5 N -0.309 5.309 6 C 0.135 3.865 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.173 4.173 10 N -0.555 5.555 11 Si 0.775 3.225 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.190 1.190 15 C 0.277 3.723 16 O -0.458 6.458 17 C 0.035 3.965 18 H 0.129 0.871 19 F -0.187 7.187 20 C -0.155 4.155 21 C -0.097 4.097 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.158 4.158 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.051 0.949 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.631 7.351 -5.894 9.562 hybrid contribution 0.120 -0.549 0.532 0.774 sum 1.751 6.802 -5.362 8.836 Atomic orbital electron populations 1.22881 0.79911 1.03418 1.00643 1.87999 1.21264 1.28229 1.95488 1.22937 0.93537 0.84853 1.00982 1.21611 0.93016 0.99771 0.86632 1.48250 1.62257 1.09195 1.11229 1.19144 0.96592 0.73873 0.96917 1.21603 0.97437 0.92658 1.47017 0.92409 1.25598 1.00822 0.96239 0.94640 1.70024 1.36156 1.01577 1.47705 0.85719 0.80406 0.77181 0.79152 1.19730 1.20862 1.19038 1.21117 0.77644 0.86941 0.86633 1.90568 1.55562 1.14904 1.84782 1.21880 0.86106 1.04048 0.84452 0.87114 1.92777 1.60646 1.98116 1.67163 1.21986 0.94972 0.99431 0.99093 1.21091 0.98358 0.94866 0.95355 1.21543 0.97112 0.98304 0.97686 1.21513 1.00791 0.95921 0.96936 1.21537 0.97354 0.95911 1.00581 1.21499 0.98836 0.98485 0.96649 1.21635 1.00077 0.95884 0.98204 0.89214 0.92123 0.94171 0.89472 0.94482 0.89441 0.88341 0.94946 0.96604 0.92329 0.90190 0.90086 0.91147 0.91805 0.91141 0.90421 0.91811 0.90800 0.92183 0.91909 0.92405 0.92445 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -14.88 9.53 -148.98 -1.42 -16.29 16 3 C 0.05 1.77 6.28 71.98 0.45 2.22 16 4 C 0.11 4.16 5.81 86.38 0.50 4.66 16 5 N -0.58 -25.37 2.42 -826.16 -2.00 -27.37 16 6 C 0.26 12.68 4.58 85.63 0.39 13.07 16 7 C -0.55 -28.35 9.07 25.60 0.23 -28.12 16 8 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.03 1.47 5.46 84.65 0.46 1.93 16 10 N -0.92 -50.72 13.29 21.44 0.28 -50.44 16 11 Si 0.95 41.21 29.54 68.60 2.03 43.24 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 15 C 0.49 21.36 7.01 87.66 0.61 21.97 16 16 O -0.58 -26.06 16.18 -3.01 -0.05 -26.11 16 17 C 0.07 2.98 3.03 29.85 0.09 3.07 16 18 H 0.11 4.87 3.80 -2.38 -0.01 4.86 16 19 F -0.21 -8.50 16.66 44.97 0.75 -7.75 16 20 C -0.12 -3.91 4.16 30.59 0.13 -3.78 16 21 C -0.08 -2.24 2.15 -10.80 -0.02 -2.26 16 22 C -0.11 -2.47 5.20 30.59 0.16 -2.31 16 23 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16 24 C -0.12 -2.40 5.92 30.59 0.18 -2.22 16 25 C -0.12 -3.01 5.92 30.58 0.18 -2.83 16 26 C -0.12 -3.74 4.96 30.58 0.15 -3.59 16 27 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 3.25 8.07 -2.39 -0.02 3.23 16 33 H 0.10 3.41 7.42 -2.39 -0.02 3.39 16 34 H 0.03 1.75 7.11 -2.39 -0.02 1.74 16 35 H 0.02 0.85 6.23 -2.39 -0.01 0.83 16 36 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.08 2.66 8.05 -2.39 -0.02 2.64 16 39 H 0.07 2.07 7.82 -2.39 -0.02 2.05 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.04 1.59 6.46 -2.39 -0.02 1.57 16 Total: -1.00 -61.32 388.65 5.45 -55.87 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.90 Total: 27.09 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 4.95 Total: 1.77 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -1.71 Total: -77.81 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.47 Total: -42.41 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 0.75 Total: -7.75 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -61.32 5.45 -55.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793416716.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.414 kcal (2) G-P(sol) polarization free energy of solvation -61.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds