Wall clock time and date at job start Tue Mar 31 2020 12:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99834 * 2 1 4 4 C 1.52998 * 109.47027 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47472 * 64.99797 * 4 3 2 6 6 C 1.46502 * 120.00159 * 266.28922 * 5 4 3 7 7 C 1.50709 * 109.46705 * 264.20857 * 6 5 4 8 8 H 1.07994 * 120.00061 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99618 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00452 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99818 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47001 * 90.00151 * 11 9 7 13 13 H 1.48506 * 109.46932 * 209.99901 * 11 9 7 14 14 H 1.48493 * 109.47198 * 330.00155 * 11 9 7 15 15 C 1.34773 * 119.99929 * 86.28484 * 5 4 3 16 16 O 1.21284 * 120.00294 * 5.25596 * 15 5 4 17 17 C 1.50707 * 120.00064 * 185.25104 * 15 5 4 18 18 H 1.08999 * 109.46945 * 16.04172 * 17 15 5 19 19 F 1.39897 * 109.47443 * 256.03801 * 17 15 5 20 20 C 1.53001 * 109.46934 * 136.03537 * 17 15 5 21 21 C 1.52996 * 109.47105 * 185.00009 * 20 17 15 22 22 C 1.53003 * 109.47331 * 185.00153 * 21 20 17 23 23 C 1.52996 * 109.47135 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47533 * 59.99869 * 23 22 21 25 25 C 1.52995 * 109.47192 * 300.00072 * 24 23 22 26 26 C 1.53000 * 109.47009 * 65.00223 * 21 20 17 27 27 H 1.09000 * 109.47224 * 59.99951 * 1 2 3 28 28 H 1.08997 * 109.46645 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46861 * 300.00123 * 1 2 3 30 30 H 1.08994 * 109.47280 * 60.00123 * 3 2 1 31 31 H 1.09000 * 109.46960 * 300.00062 * 3 2 1 32 32 H 1.09005 * 109.46883 * 304.99541 * 4 3 2 33 33 H 1.08998 * 109.47364 * 185.00295 * 4 3 2 34 34 H 1.09004 * 109.47340 * 24.20218 * 6 5 4 35 35 H 1.08993 * 109.47617 * 144.20866 * 6 5 4 36 36 H 0.96991 * 120.00531 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.46974 * 64.99962 * 20 17 15 38 38 H 1.08999 * 109.47412 * 305.00023 * 20 17 15 39 39 H 1.09000 * 109.47654 * 305.00091 * 21 20 17 40 40 H 1.09003 * 109.47116 * 300.00204 * 22 21 20 41 41 H 1.08994 * 109.47110 * 59.99969 * 22 21 20 42 42 H 1.09003 * 109.47207 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.46859 * 299.99840 * 23 22 21 44 44 H 1.09000 * 109.46830 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.47072 * 60.00101 * 24 23 22 46 46 H 1.09003 * 109.47136 * 299.99991 * 25 24 23 47 47 H 1.08994 * 109.47285 * 180.02562 * 25 24 23 48 48 H 1.08995 * 109.47509 * 300.00176 * 26 21 20 49 49 H 1.09003 * 109.47072 * 60.00021 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 4.1836 -0.8842 -1.3190 7 6 5.6412 -1.1933 -1.0924 8 1 6.3424 -0.3910 -0.9171 9 6 6.0792 -2.5006 -1.1091 10 7 5.2253 -3.4777 -1.3232 11 14 7.8860 -2.8837 -0.8290 12 1 8.1308 -3.0812 0.6223 13 1 8.2494 -4.1212 -1.5652 14 1 8.7138 -1.7536 -1.3214 15 6 4.1895 1.3266 -2.3435 16 8 4.1102 2.5342 -2.2646 17 6 4.5271 0.6781 -3.6614 18 1 4.2790 -0.3824 -3.6185 19 9 5.8942 0.8273 -3.9179 20 6 3.7227 1.3453 -4.7789 21 6 3.9703 0.6072 -6.0960 22 6 3.2664 1.3470 -7.2353 23 6 3.5135 0.6086 -8.5523 24 6 2.9614 -0.8147 -8.4505 25 6 3.6653 -1.5545 -7.3112 26 6 3.4186 -0.8162 -5.9945 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9786 2.1765 0.0890 34 1 3.5849 -1.3728 -0.5503 35 1 3.8830 -1.2499 -2.3008 36 1 5.5334 -4.3973 -1.3346 37 1 4.0349 2.3847 -4.8805 38 1 2.6610 1.3070 -4.5350 39 1 5.0413 0.5684 -6.2950 40 1 2.1954 1.3858 -7.0364 41 1 3.6594 2.3610 -7.3076 42 1 3.0124 1.1358 -9.3641 43 1 4.5845 0.5695 -8.7515 44 1 3.1380 -1.3408 -9.3886 45 1 1.8905 -0.7756 -8.2513 46 1 4.7363 -1.5936 -7.5103 47 1 3.2724 -2.5686 -7.2389 48 1 3.9200 -1.3433 -5.1828 49 1 2.3476 -0.7775 -5.7955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793416719.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:35 Heat of formation + Delta-G solvation = -162.723773 kcal Electronic energy + Delta-G solvation = -28454.063383 eV Core-core repulsion = 24522.462779 eV Total energy + Delta-G solvation = -3931.600604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.09312 -39.23919 -38.52220 -37.41294 -35.02511 -33.33694 -32.61379 -30.70777 -30.25524 -28.47404 -27.04567 -26.01233 -24.42230 -22.95151 -22.60606 -22.12180 -20.64382 -19.60156 -18.53775 -17.09467 -16.64586 -16.11605 -15.99346 -15.65733 -15.17846 -15.11007 -14.90979 -14.49134 -14.43046 -14.10224 -14.01070 -13.63464 -13.53804 -13.22904 -12.52588 -12.38461 -12.19269 -12.07832 -12.03486 -11.85873 -11.72638 -11.59567 -11.52923 -11.30930 -11.03964 -10.93295 -10.88613 -10.80961 -10.74721 -10.40950 -10.32932 -10.08742 -9.95219 -9.74443 -9.64216 -9.45388 -8.95707 -8.47476 -7.78859 -6.13272 -4.20091 3.13308 3.27840 3.34637 3.40995 3.70109 4.08901 4.38929 4.70983 4.74287 4.81270 5.06889 5.08617 5.18809 5.20658 5.32698 5.39366 5.42025 5.43607 5.54649 5.57045 5.59408 5.61428 5.62843 5.63592 5.65084 5.70775 5.75133 5.80213 5.99882 6.03567 6.08174 6.17867 6.19707 6.20917 6.29165 6.33002 6.35404 6.41486 6.57596 6.64351 6.76027 7.21290 7.41115 7.51978 7.82798 8.09319 8.22473 8.74556 8.91769 9.47447 10.93476 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.008792 B = 0.005338 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.105695 B = 5244.023807 C = 6853.062217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.579 5.579 6 C 0.238 3.762 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.068 3.932 10 N -0.890 5.890 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.496 3.504 16 O -0.565 6.565 17 C 0.082 3.918 18 H 0.115 0.885 19 F -0.191 7.191 20 C -0.129 4.129 21 C -0.087 4.087 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.122 4.122 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 5.691 -7.730 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.030 4.030 4 C -0.005 4.005 5 N -0.308 5.308 6 C 0.119 3.881 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.135 4.135 10 N -0.528 5.528 11 Si 0.722 3.278 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.282 3.718 16 O -0.445 6.445 17 C 0.043 3.957 18 H 0.132 0.868 19 F -0.172 7.172 20 C -0.167 4.167 21 C -0.105 4.105 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.159 4.159 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.492 5.915 -7.689 12.893 hybrid contribution 0.845 -0.201 0.285 0.914 sum -7.648 5.715 -7.404 12.081 Atomic orbital electron populations 1.22687 0.82049 1.02448 0.99227 1.88047 1.18758 1.27446 1.95224 1.23020 0.95137 0.84938 0.99897 1.21390 0.91097 0.99851 0.88128 1.48240 1.62893 1.10930 1.08744 1.19570 0.97011 0.72770 0.98791 1.21519 0.93338 0.92621 1.50224 0.92109 1.24895 0.97947 0.95991 0.94711 1.69926 1.34318 0.99736 1.48862 0.86535 0.84998 0.77979 0.78276 1.20560 1.21042 1.19637 1.20851 0.77449 0.87062 0.86429 1.90590 1.53621 1.14379 1.85921 1.21692 0.77935 1.03383 0.92648 0.86778 1.92826 1.32319 1.97317 1.94709 1.22068 1.00364 1.00705 0.93539 1.21149 1.00936 0.94840 0.93612 1.21548 1.00491 0.98622 0.94218 1.21525 1.01107 0.95812 0.97158 1.21541 0.99995 0.95738 0.98348 1.21502 1.00716 0.98695 0.94682 1.21691 1.01165 0.95182 0.97864 0.94629 0.89806 0.94654 0.93012 0.93380 0.89175 0.89394 0.93026 0.94852 0.92577 0.90128 0.90521 0.90450 0.92079 0.92067 0.92415 0.92036 0.92478 0.92205 0.91967 0.92011 0.90911 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.47 10.06 -35.23 -0.35 -6.83 16 3 C 0.05 0.76 6.26 37.16 0.23 0.99 16 4 C 0.12 2.19 5.77 -4.05 -0.02 2.17 16 5 N -0.58 -12.41 2.43 -175.06 -0.42 -12.84 16 6 C 0.24 5.74 4.75 -5.19 -0.02 5.72 16 7 C -0.54 -14.37 9.33 -34.44 -0.32 -14.69 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -24.71 13.29 55.43 0.74 -23.97 16 11 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.50 10.67 6.95 -10.98 -0.08 10.60 16 16 O -0.56 -12.81 16.19 5.55 0.09 -12.72 16 17 C 0.08 1.62 3.23 -27.88 -0.09 1.53 16 18 H 0.11 2.32 3.74 -51.93 -0.19 2.13 16 19 F -0.19 -4.16 16.66 2.25 0.04 -4.12 16 20 C -0.13 -2.04 4.15 -26.73 -0.11 -2.15 16 21 C -0.09 -1.20 2.15 -90.62 -0.20 -1.39 16 22 C -0.11 -1.27 5.20 -26.73 -0.14 -1.41 16 23 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 24 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 25 C -0.12 -1.42 5.92 -26.75 -0.16 -1.58 16 26 C -0.12 -1.67 4.96 -26.75 -0.13 -1.80 16 27 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 33 H 0.09 1.56 7.47 -51.93 -0.39 1.18 16 34 H 0.05 1.33 7.59 -51.93 -0.39 0.93 16 35 H 0.03 0.83 5.86 -51.93 -0.30 0.52 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.15 7.82 -51.93 -0.41 0.74 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.07 1.16 6.46 -51.93 -0.34 0.82 16 49 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -29.94 389.76 -8.15 -38.08 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.74 Total: 1.90 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.34 Total: -1.52 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.31 Total: -36.81 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.26 Total: -19.54 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.94 -8.15 -38.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793416719.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.639 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds