Wall clock time and date at job start Tue Mar 31 2020 12:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99834 * 2 1 4 4 C 1.52998 * 109.47027 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47472 * 64.99797 * 4 3 2 6 6 C 1.46502 * 120.00159 * 266.28922 * 5 4 3 7 7 C 1.50709 * 109.46705 * 264.20857 * 6 5 4 8 8 H 1.07994 * 120.00061 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99618 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00452 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99818 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47001 * 90.00151 * 11 9 7 13 13 H 1.48506 * 109.46932 * 209.99901 * 11 9 7 14 14 H 1.48493 * 109.47198 * 330.00155 * 11 9 7 15 15 C 1.34773 * 119.99929 * 86.28484 * 5 4 3 16 16 O 1.21284 * 120.00294 * 5.25596 * 15 5 4 17 17 C 1.50707 * 120.00064 * 185.25104 * 15 5 4 18 18 H 1.08999 * 109.46945 * 16.04172 * 17 15 5 19 19 F 1.39897 * 109.47443 * 256.03801 * 17 15 5 20 20 C 1.53001 * 109.46934 * 136.03537 * 17 15 5 21 21 C 1.52996 * 109.47105 * 185.00009 * 20 17 15 22 22 C 1.53003 * 109.47331 * 185.00153 * 21 20 17 23 23 C 1.52996 * 109.47135 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47533 * 59.99869 * 23 22 21 25 25 C 1.52995 * 109.47192 * 300.00072 * 24 23 22 26 26 C 1.53000 * 109.47009 * 65.00223 * 21 20 17 27 27 H 1.09000 * 109.47224 * 59.99951 * 1 2 3 28 28 H 1.08997 * 109.46645 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46861 * 300.00123 * 1 2 3 30 30 H 1.08994 * 109.47280 * 60.00123 * 3 2 1 31 31 H 1.09000 * 109.46960 * 300.00062 * 3 2 1 32 32 H 1.09005 * 109.46883 * 304.99541 * 4 3 2 33 33 H 1.08998 * 109.47364 * 185.00295 * 4 3 2 34 34 H 1.09004 * 109.47340 * 24.20218 * 6 5 4 35 35 H 1.08993 * 109.47617 * 144.20866 * 6 5 4 36 36 H 0.96991 * 120.00531 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.46974 * 64.99962 * 20 17 15 38 38 H 1.08999 * 109.47412 * 305.00023 * 20 17 15 39 39 H 1.09000 * 109.47654 * 305.00091 * 21 20 17 40 40 H 1.09003 * 109.47116 * 300.00204 * 22 21 20 41 41 H 1.08994 * 109.47110 * 59.99969 * 22 21 20 42 42 H 1.09003 * 109.47207 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.46859 * 299.99840 * 23 22 21 44 44 H 1.09000 * 109.46830 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.47072 * 60.00101 * 24 23 22 46 46 H 1.09003 * 109.47136 * 299.99991 * 25 24 23 47 47 H 1.08994 * 109.47285 * 180.02562 * 25 24 23 48 48 H 1.08995 * 109.47509 * 300.00176 * 26 21 20 49 49 H 1.09003 * 109.47072 * 60.00021 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 4.1836 -0.8842 -1.3190 7 6 5.6412 -1.1933 -1.0924 8 1 6.3424 -0.3910 -0.9171 9 6 6.0792 -2.5006 -1.1091 10 7 5.2253 -3.4777 -1.3232 11 14 7.8860 -2.8837 -0.8290 12 1 8.1308 -3.0812 0.6223 13 1 8.2494 -4.1212 -1.5652 14 1 8.7138 -1.7536 -1.3214 15 6 4.1895 1.3266 -2.3435 16 8 4.1102 2.5342 -2.2646 17 6 4.5271 0.6781 -3.6614 18 1 4.2790 -0.3824 -3.6185 19 9 5.8942 0.8273 -3.9179 20 6 3.7227 1.3453 -4.7789 21 6 3.9703 0.6072 -6.0960 22 6 3.2664 1.3470 -7.2353 23 6 3.5135 0.6086 -8.5523 24 6 2.9614 -0.8147 -8.4505 25 6 3.6653 -1.5545 -7.3112 26 6 3.4186 -0.8162 -5.9945 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9786 2.1765 0.0890 34 1 3.5849 -1.3728 -0.5503 35 1 3.8830 -1.2499 -2.3008 36 1 5.5334 -4.3973 -1.3346 37 1 4.0349 2.3847 -4.8805 38 1 2.6610 1.3070 -4.5350 39 1 5.0413 0.5684 -6.2950 40 1 2.1954 1.3858 -7.0364 41 1 3.6594 2.3610 -7.3076 42 1 3.0124 1.1358 -9.3641 43 1 4.5845 0.5695 -8.7515 44 1 3.1380 -1.3408 -9.3886 45 1 1.8905 -0.7756 -8.2513 46 1 4.7363 -1.5936 -7.5103 47 1 3.2724 -2.5686 -7.2389 48 1 3.9200 -1.3433 -5.1828 49 1 2.3476 -0.7775 -5.7955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793416719.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:34 Heat of formation + Delta-G solvation = -178.106579 kcal Electronic energy + Delta-G solvation = -28454.730432 eV Core-core repulsion = 24522.462779 eV Total energy + Delta-G solvation = -3932.267653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.200 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -48.79884 -40.88769 -39.58064 -38.71617 -36.79354 -34.68600 -34.46454 -31.81933 -31.56739 -29.83971 -28.85544 -27.18261 -25.75690 -24.89758 -23.75512 -23.29813 -21.77500 -20.64894 -20.19356 -18.76809 -18.59827 -17.74544 -17.35375 -17.12044 -16.59004 -16.44347 -16.31419 -16.14084 -15.81074 -15.27081 -15.12806 -14.91722 -14.80459 -14.74969 -14.29063 -13.85927 -13.67486 -13.50805 -13.31504 -13.17039 -13.07519 -12.94251 -12.81409 -12.79388 -12.67086 -12.54462 -12.18290 -12.06172 -11.97407 -11.83366 -11.79178 -11.68242 -11.32198 -10.98553 -10.80471 -10.76699 -10.62847 -10.44670 -9.57769 -8.21773 -6.35940 1.37961 1.38805 1.42718 1.52061 2.07410 2.40313 2.90601 3.08687 3.35806 3.49052 3.70471 3.77368 3.92123 4.03446 4.05875 4.12195 4.17447 4.35409 4.37703 4.44952 4.50515 4.52511 4.55006 4.57837 4.59114 4.64148 4.67343 4.80882 4.82928 4.84821 4.89090 4.91784 5.00790 5.08213 5.20002 5.22366 5.28660 5.32068 5.34289 5.42696 5.49924 5.57757 5.62434 5.77823 6.02944 6.24768 6.42564 6.75044 7.07345 7.35572 8.83966 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.008792 B = 0.005338 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.105695 B = 5244.023807 C = 6853.062217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.057 3.943 4 C 0.110 3.890 5 N -0.581 5.581 6 C 0.258 3.742 7 C -0.551 4.551 8 H 0.046 0.954 9 C 0.027 3.973 10 N -0.914 5.914 11 Si 0.951 3.049 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.277 1.277 15 C 0.491 3.509 16 O -0.577 6.577 17 C 0.080 3.920 18 H 0.104 0.896 19 F -0.205 7.205 20 C -0.118 4.118 21 C -0.082 4.082 22 C -0.107 4.107 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.121 4.121 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.024 0.976 36 H 0.269 0.731 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.041 0.959 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 6.163 -8.535 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.020 4.020 4 C -0.012 4.012 5 N -0.310 5.310 6 C 0.138 3.862 7 C -0.589 4.589 8 H 0.064 0.936 9 C -0.174 4.174 10 N -0.553 5.553 11 Si 0.776 3.224 12 H -0.196 1.196 13 H -0.201 1.201 14 H -0.202 1.202 15 C 0.278 3.722 16 O -0.458 6.458 17 C 0.041 3.959 18 H 0.121 0.879 19 F -0.186 7.186 20 C -0.156 4.156 21 C -0.101 4.101 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.152 4.152 25 C -0.156 4.156 26 C -0.158 4.158 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.362 6.394 -8.480 14.158 hybrid contribution 1.081 -0.353 0.597 1.285 sum -8.281 6.041 -7.883 12.931 Atomic orbital electron populations 1.22890 0.79774 1.03465 1.00736 1.87994 1.21344 1.28152 1.95515 1.22905 0.92992 0.84901 1.01238 1.21617 0.93383 0.99618 0.86603 1.48239 1.62885 1.09953 1.09965 1.19133 0.95371 0.74245 0.97475 1.21658 0.94272 0.92505 1.50506 0.93579 1.25566 1.01606 0.95841 0.94387 1.70000 1.35904 1.00100 1.49254 0.85659 0.80426 0.77695 0.78585 1.19605 1.20138 1.20164 1.21140 0.77184 0.86984 0.86932 1.90568 1.54353 1.14700 1.86220 1.21835 0.77589 1.03130 0.93364 0.87887 1.92787 1.33682 1.97354 1.94804 1.22041 1.00108 1.00310 0.93154 1.21114 1.00487 0.94958 0.93491 1.21529 1.00640 0.98632 0.93673 1.21529 1.01204 0.95753 0.96931 1.21525 1.00060 0.95636 0.97991 1.21506 1.00652 0.98945 0.94503 1.21661 1.01160 0.95098 0.97923 0.93785 0.89158 0.92382 0.89626 0.93851 0.89640 0.88873 0.94764 0.95786 0.92214 0.90322 0.89433 0.91880 0.91153 0.91525 0.90393 0.92391 0.91025 0.91500 0.92675 0.91801 0.94026 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.41 -13.88 10.06 -148.98 -1.50 -15.38 16 3 C 0.06 1.76 6.26 71.98 0.45 2.21 16 4 C 0.11 4.08 5.77 86.38 0.50 4.57 16 5 N -0.58 -25.46 2.43 -826.15 -2.00 -27.46 16 6 C 0.26 12.85 4.75 85.64 0.41 13.26 16 7 C -0.55 -30.09 9.33 25.60 0.24 -29.85 16 8 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 9 C 0.03 1.47 5.46 84.65 0.46 1.93 16 10 N -0.91 -51.26 13.29 21.45 0.28 -50.98 16 11 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 15 C 0.49 21.47 6.95 87.66 0.61 22.08 16 16 O -0.58 -26.21 16.19 -3.04 -0.05 -26.26 16 17 C 0.08 3.21 3.23 29.85 0.10 3.31 16 18 H 0.10 4.40 3.74 -2.39 -0.01 4.39 16 19 F -0.21 -9.22 16.66 44.97 0.75 -8.47 16 20 C -0.12 -3.74 4.15 30.59 0.13 -3.61 16 21 C -0.08 -2.23 2.15 -10.79 -0.02 -2.25 16 22 C -0.11 -2.24 5.20 30.59 0.16 -2.08 16 23 C -0.12 -2.11 5.92 30.59 0.18 -1.93 16 24 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 25 C -0.12 -2.77 5.92 30.58 0.18 -2.59 16 26 C -0.12 -3.33 4.96 30.58 0.15 -3.18 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 3.19 8.04 -2.38 -0.02 3.17 16 33 H 0.09 3.30 7.47 -2.39 -0.02 3.28 16 34 H 0.03 1.82 7.59 -2.38 -0.02 1.80 16 35 H 0.02 1.25 5.86 -2.39 -0.01 1.24 16 36 H 0.27 14.23 8.31 -92.72 -0.77 13.46 16 37 H 0.08 2.53 8.04 -2.39 -0.02 2.51 16 38 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.06 1.89 7.82 -2.39 -0.02 1.87 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 46 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.04 1.39 6.46 -2.39 -0.02 1.37 16 49 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -64.11 389.76 5.38 -58.73 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.90 Total: 22.38 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 4.97 Total: 1.84 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -1.72 Total: -78.44 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.55 Total: -41.64 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 0.75 Total: -8.47 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.11 5.38 -58.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793416719.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.376 kcal (2) G-P(sol) polarization free energy of solvation -64.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds