Wall clock time and date at job start Tue Mar 31 2020 10:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46575 * 2 1 4 4 N 1.46896 * 109.47245 * 119.99943 * 2 1 3 5 5 C 1.46898 * 111.00334 * 278.00705 * 4 2 1 6 6 C 1.52995 * 109.47220 * 177.36424 * 5 4 2 7 7 C 1.50706 * 115.54955 * 279.75191 * 6 5 4 8 8 H 1.07995 * 119.99551 * 115.13797 * 7 6 5 9 9 C 1.37876 * 119.99896 * 295.13401 * 7 6 5 10 10 N 1.31509 * 120.00218 * 354.70816 * 9 7 6 11 11 Si 1.86804 * 119.99309 * 174.71034 * 9 7 6 12 12 H 1.48496 * 109.47601 * 60.00232 * 11 9 7 13 13 H 1.48509 * 109.46767 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47116 * 299.99536 * 11 9 7 15 15 C 1.53001 * 117.49925 * 134.04852 * 6 5 4 16 16 C 1.52999 * 117.49928 * 65.42360 * 6 5 4 17 17 C 1.50696 * 109.47254 * 240.00290 * 2 1 3 18 18 C 1.37867 * 120.14469 * 267.08352 * 17 2 1 19 19 C 1.38921 * 120.62383 * 179.70461 * 18 17 2 20 20 C 1.37754 * 119.77045 * 0.28420 * 19 18 17 21 21 C 1.38786 * 119.73641 * 0.14863 * 20 19 18 22 22 C 1.38478 * 120.49849 * 359.70289 * 21 20 19 23 23 O 1.35905 * 120.16750 * 180.02562 * 22 21 20 24 24 C 1.50634 * 122.54920 * 180.53592 * 20 19 18 25 25 C 1.52730 * 110.60228 * 341.99134 * 24 20 19 26 26 C 1.53313 * 108.40506 * 51.11715 * 25 24 20 27 27 C 1.50648 * 117.69544 * 179.70244 * 19 18 17 28 28 H 1.08998 * 109.47289 * 300.00191 * 1 2 3 29 29 H 1.09006 * 109.46911 * 59.99916 * 1 2 3 30 30 H 1.09003 * 109.46895 * 179.97438 * 1 2 3 31 31 H 1.00899 * 110.99881 * 154.04979 * 4 2 1 32 32 H 1.09004 * 109.47215 * 57.36411 * 5 4 2 33 33 H 1.08999 * 109.47257 * 297.36898 * 5 4 2 34 34 H 0.96998 * 119.99620 * 185.02532 * 10 9 7 35 35 H 1.09003 * 117.49528 * 359.97438 * 15 6 5 36 36 H 1.08999 * 117.49894 * 145.01821 * 15 6 5 37 37 H 1.08992 * 117.49803 * 214.97481 * 16 6 5 38 38 H 1.09003 * 117.49928 * 359.97438 * 16 6 5 39 39 H 1.08008 * 119.68880 * 359.97438 * 18 17 2 40 40 H 1.07992 * 119.75063 * 179.68455 * 21 20 19 41 41 H 0.96702 * 113.99596 * 269.97713 * 23 22 21 42 42 H 1.08998 * 109.25271 * 102.28333 * 24 20 19 43 43 H 1.09005 * 109.24835 * 221.70617 * 24 20 19 44 44 H 1.09008 * 109.67841 * 291.39096 * 25 24 20 45 45 H 1.08994 * 109.70538 * 170.86709 * 25 24 20 46 46 H 1.09000 * 109.68206 * 170.43510 * 26 25 24 47 47 H 1.09000 * 109.68091 * 49.88720 * 26 25 24 48 48 H 1.08997 * 109.25952 * 282.76161 * 27 19 18 49 49 H 1.08997 * 109.25848 * 42.20000 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0151 0.2036 2.3634 6 6 2.4678 -0.5693 3.6038 7 6 1.4132 -1.4247 4.2575 8 1 1.5248 -2.4987 4.2769 9 6 0.3060 -0.8360 4.8307 10 7 0.2196 0.4744 4.8999 11 14 -1.0713 -1.9001 5.5092 12 1 -0.5366 -2.7781 6.5808 13 1 -2.1383 -1.0314 6.0682 14 1 -1.6338 -2.7364 4.4186 15 6 3.5008 0.0981 4.5140 16 6 3.9092 -1.0819 3.6297 17 6 2.0324 -0.7103 -1.2305 18 6 2.3204 -2.0577 -1.1830 19 6 2.7782 -2.7238 -2.3129 20 6 2.9522 -2.0318 -3.4912 21 6 2.6717 -0.6734 -3.5397 22 6 2.2124 -0.0100 -2.4143 23 8 1.9393 1.3201 -2.4695 24 6 3.4337 -2.6933 -4.7560 25 6 4.0972 -4.0328 -4.4429 26 6 3.1450 -4.8506 -3.5626 27 6 3.0790 -4.1944 -2.1850 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9388 -1.0787 1.0440 32 1 1.0074 0.5876 2.5224 33 1 2.6968 1.0351 2.1846 34 1 -0.5232 0.8874 5.3674 35 1 3.8582 1.0876 4.2288 36 1 3.4177 -0.0814 5.5859 37 1 4.0947 -2.0375 4.1199 38 1 4.5348 -0.8689 2.7628 39 1 2.1846 -2.6016 -0.2597 40 1 2.8129 -0.1297 -4.4620 41 1 2.6929 1.8857 -2.2518 42 1 2.5856 -2.8589 -5.4203 43 1 4.1547 -2.0419 -5.2502 44 1 5.0338 -3.8632 -3.9115 45 1 4.2936 -4.5712 -5.3700 46 1 3.5187 -5.8700 -3.4660 47 1 2.1515 -4.8642 -4.0106 48 1 4.0361 -4.3229 -1.6794 49 1 2.2955 -4.6718 -1.5967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797586946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:03 Heat of formation + Delta-G solvation = -14.717597 kcal Electronic energy + Delta-G solvation = -26770.665822 eV Core-core repulsion = 23276.252472 eV Total energy + Delta-G solvation = -3494.413350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41372 -38.04044 -37.20026 -35.73627 -34.33365 -32.34256 -31.91221 -30.32578 -28.55549 -28.26111 -25.73890 -24.57280 -23.76077 -22.69895 -22.24732 -21.17276 -20.43768 -19.19220 -18.96469 -17.72614 -16.45299 -16.23337 -15.56406 -15.44802 -14.66740 -14.46426 -14.44201 -14.20759 -13.97666 -13.67798 -13.53846 -13.33478 -13.04582 -12.79648 -12.74218 -12.38673 -12.12612 -11.73681 -11.65733 -11.46888 -11.20606 -11.05686 -10.98463 -10.87792 -10.85042 -10.83593 -10.62226 -10.46936 -10.37717 -10.20237 -9.99628 -9.32636 -8.85700 -8.56855 -8.46889 -8.21081 -8.03707 -7.52440 -5.94145 -3.96345 1.30456 1.41627 3.37137 3.41478 3.45376 3.62904 4.23770 4.48338 4.56030 4.62261 4.71752 4.73155 4.93415 5.03381 5.13568 5.20298 5.30645 5.40089 5.43914 5.46300 5.53301 5.63984 5.68558 5.78485 5.81370 5.85557 5.88712 5.93569 6.04146 6.14570 6.17968 6.22161 6.28669 6.36787 6.38583 6.47964 6.57968 6.61490 6.68299 6.71195 6.74381 6.82272 6.97520 7.01104 7.11479 7.43221 7.68116 7.71167 7.97717 8.02306 8.21127 8.56147 9.00715 9.65881 11.14530 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.003522 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.470353 B = 7947.154013 C = 8407.258289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.132 3.868 3 H 0.041 0.959 4 N -0.669 5.669 5 C 0.107 3.893 6 C 0.063 3.937 7 C -0.474 4.474 8 H 0.057 0.943 9 C 0.070 3.930 10 N -0.886 5.886 11 Si 0.889 3.111 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.179 4.179 16 C -0.211 4.211 17 C -0.101 4.101 18 C -0.088 4.088 19 C -0.085 4.085 20 C -0.072 4.072 21 C -0.150 4.150 22 C 0.103 3.897 23 O -0.495 6.495 24 C -0.078 4.078 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.080 4.080 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.328 0.672 32 H 0.091 0.909 33 H -0.007 1.007 34 H 0.259 0.741 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.385 0.615 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.134 -4.282 -18.670 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.022 3.978 3 H 0.059 0.941 4 N -0.300 5.300 5 C -0.022 4.022 6 C 0.062 3.938 7 C -0.511 4.511 8 H 0.075 0.925 9 C -0.132 4.132 10 N -0.524 5.524 11 Si 0.717 3.283 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.217 4.217 16 C -0.248 4.248 17 C -0.102 4.102 18 C -0.106 4.106 19 C -0.085 4.085 20 C -0.072 4.072 21 C -0.169 4.169 22 C 0.058 3.942 23 O -0.305 6.305 24 C -0.115 4.115 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.117 4.117 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.109 0.891 33 H 0.011 0.989 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.240 0.760 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.778 -4.579 -18.660 20.064 hybrid contribution 0.470 0.497 0.424 0.805 sum 6.248 -4.082 -18.237 19.705 Atomic orbital electron populations 1.21684 0.93577 1.02243 1.01061 1.20211 0.96246 0.94508 0.86851 0.94119 1.60528 1.30327 1.36723 1.02406 1.21580 1.01476 0.90814 0.88289 1.18799 0.86369 0.96068 0.92541 1.20351 1.03054 0.92254 1.35478 0.92469 1.24907 0.97605 0.94810 0.95894 1.69939 1.31641 1.08634 1.42171 0.86720 0.82067 0.80391 0.79148 1.20522 1.21490 1.20122 1.22756 1.07717 0.93772 0.97493 1.22822 1.02325 0.98110 1.01593 1.20351 1.00114 0.94883 0.94875 1.21159 0.97283 0.93524 0.98636 1.19639 1.00254 0.95769 0.92837 1.19382 1.00042 0.92880 0.94875 1.21264 1.02466 0.94740 0.98383 1.18198 0.99532 0.83995 0.92479 1.84837 1.39800 1.13915 1.91931 1.20433 1.00133 0.96326 0.94560 1.21540 0.98839 0.95471 0.99823 1.21545 0.99974 0.98678 0.95494 1.20457 1.02405 0.91240 0.97606 0.91850 0.93272 0.92249 0.85387 0.89068 0.98895 0.93127 0.92191 0.90305 0.90606 0.92154 0.84054 0.86045 0.75995 0.90856 0.91089 0.91607 0.91670 0.91538 0.91700 0.90610 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.36 37.16 0.35 -1.94 16 2 C 0.13 2.27 2.58 -68.87 -0.18 2.10 16 3 H 0.04 0.71 7.37 -51.93 -0.38 0.33 16 4 N -0.67 -13.01 5.47 -107.96 -0.59 -13.60 16 5 C 0.11 2.41 5.29 -3.83 -0.02 2.39 16 6 C 0.06 1.53 1.51 -155.66 -0.23 1.30 16 7 C -0.47 -12.85 8.84 -34.44 -0.30 -13.16 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.07 1.91 5.29 -17.82 -0.09 1.81 16 10 N -0.89 -24.96 12.37 55.43 0.69 -24.28 16 11 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 C -0.18 -4.17 9.88 -26.73 -0.26 -4.43 16 16 C -0.21 -4.53 9.55 -26.73 -0.26 -4.79 16 17 C -0.10 -1.55 4.90 -104.58 -0.51 -2.06 16 18 C -0.09 -1.28 8.47 -39.46 -0.33 -1.62 16 19 C -0.08 -1.07 5.74 -104.57 -0.60 -1.67 16 20 C -0.07 -0.84 5.74 -104.63 -0.60 -1.44 16 21 C -0.15 -1.85 9.55 -39.29 -0.38 -2.23 16 22 C 0.10 1.43 6.67 -39.32 -0.26 1.17 16 23 O -0.50 -6.42 12.62 -19.44 -0.25 -6.67 16 24 C -0.08 -0.69 5.67 -28.05 -0.16 -0.85 16 25 C -0.12 -0.95 5.98 -26.71 -0.16 -1.11 16 26 C -0.12 -1.02 5.98 -26.71 -0.16 -1.18 16 27 C -0.08 -0.83 5.67 -28.04 -0.16 -0.99 16 28 H 0.06 1.24 7.23 -51.93 -0.38 0.86 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.33 6.04 7.09 -39.29 -0.28 5.76 16 32 H 0.09 2.34 6.14 -51.93 -0.32 2.02 16 33 H -0.01 -0.16 7.92 -51.93 -0.41 -0.57 16 34 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 35 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 36 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 39 H 0.14 2.19 7.11 -52.48 -0.37 1.81 16 40 H 0.12 1.28 8.05 -52.49 -0.42 0.86 16 41 H 0.38 3.36 9.06 45.56 0.41 3.78 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 44 H 0.07 0.54 8.10 -51.92 -0.42 0.12 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -29.32 387.75 -11.25 -40.57 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -7.60 Total: 10.47 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -4.32 Total: -28.70 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.10 Total: -37.88 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.25 Total: -6.67 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.32 -11.25 -40.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797586946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.855 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds