Wall clock time and date at job start Tue Mar 31 2020 10:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46575 * 2 1 4 4 N 1.46896 * 109.47245 * 119.99943 * 2 1 3 5 5 C 1.46898 * 111.00334 * 278.00705 * 4 2 1 6 6 C 1.52995 * 109.47220 * 177.36424 * 5 4 2 7 7 C 1.50706 * 115.54955 * 279.75191 * 6 5 4 8 8 H 1.07995 * 119.99551 * 115.13797 * 7 6 5 9 9 C 1.37876 * 119.99896 * 295.13401 * 7 6 5 10 10 N 1.31509 * 120.00218 * 354.70816 * 9 7 6 11 11 Si 1.86804 * 119.99309 * 174.71034 * 9 7 6 12 12 H 1.48496 * 109.47601 * 60.00232 * 11 9 7 13 13 H 1.48509 * 109.46767 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47116 * 299.99536 * 11 9 7 15 15 C 1.53001 * 117.49925 * 134.04852 * 6 5 4 16 16 C 1.52999 * 117.49928 * 65.42360 * 6 5 4 17 17 C 1.50696 * 109.47254 * 240.00290 * 2 1 3 18 18 C 1.37867 * 120.14469 * 267.08352 * 17 2 1 19 19 C 1.38921 * 120.62383 * 179.70461 * 18 17 2 20 20 C 1.37754 * 119.77045 * 0.28420 * 19 18 17 21 21 C 1.38786 * 119.73641 * 0.14863 * 20 19 18 22 22 C 1.38478 * 120.49849 * 359.70289 * 21 20 19 23 23 O 1.35905 * 120.16750 * 180.02562 * 22 21 20 24 24 C 1.50634 * 122.54920 * 180.53592 * 20 19 18 25 25 C 1.52730 * 110.60228 * 341.99134 * 24 20 19 26 26 C 1.53313 * 108.40506 * 51.11715 * 25 24 20 27 27 C 1.50648 * 117.69544 * 179.70244 * 19 18 17 28 28 H 1.08998 * 109.47289 * 300.00191 * 1 2 3 29 29 H 1.09006 * 109.46911 * 59.99916 * 1 2 3 30 30 H 1.09003 * 109.46895 * 179.97438 * 1 2 3 31 31 H 1.00899 * 110.99881 * 154.04979 * 4 2 1 32 32 H 1.09004 * 109.47215 * 57.36411 * 5 4 2 33 33 H 1.08999 * 109.47257 * 297.36898 * 5 4 2 34 34 H 0.96998 * 119.99620 * 185.02532 * 10 9 7 35 35 H 1.09003 * 117.49528 * 359.97438 * 15 6 5 36 36 H 1.08999 * 117.49894 * 145.01821 * 15 6 5 37 37 H 1.08992 * 117.49803 * 214.97481 * 16 6 5 38 38 H 1.09003 * 117.49928 * 359.97438 * 16 6 5 39 39 H 1.08008 * 119.68880 * 359.97438 * 18 17 2 40 40 H 1.07992 * 119.75063 * 179.68455 * 21 20 19 41 41 H 0.96702 * 113.99596 * 269.97713 * 23 22 21 42 42 H 1.08998 * 109.25271 * 102.28333 * 24 20 19 43 43 H 1.09005 * 109.24835 * 221.70617 * 24 20 19 44 44 H 1.09008 * 109.67841 * 291.39096 * 25 24 20 45 45 H 1.08994 * 109.70538 * 170.86709 * 25 24 20 46 46 H 1.09000 * 109.68206 * 170.43510 * 26 25 24 47 47 H 1.09000 * 109.68091 * 49.88720 * 26 25 24 48 48 H 1.08997 * 109.25952 * 282.76161 * 27 19 18 49 49 H 1.08997 * 109.25848 * 42.20000 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0151 0.2036 2.3634 6 6 2.4678 -0.5693 3.6038 7 6 1.4132 -1.4247 4.2575 8 1 1.5248 -2.4987 4.2769 9 6 0.3060 -0.8360 4.8307 10 7 0.2196 0.4744 4.8999 11 14 -1.0713 -1.9001 5.5092 12 1 -0.5366 -2.7781 6.5808 13 1 -2.1383 -1.0314 6.0682 14 1 -1.6338 -2.7364 4.4186 15 6 3.5008 0.0981 4.5140 16 6 3.9092 -1.0819 3.6297 17 6 2.0324 -0.7103 -1.2305 18 6 2.3204 -2.0577 -1.1830 19 6 2.7782 -2.7238 -2.3129 20 6 2.9522 -2.0318 -3.4912 21 6 2.6717 -0.6734 -3.5397 22 6 2.2124 -0.0100 -2.4143 23 8 1.9393 1.3201 -2.4695 24 6 3.4337 -2.6933 -4.7560 25 6 4.0972 -4.0328 -4.4429 26 6 3.1450 -4.8506 -3.5626 27 6 3.0790 -4.1944 -2.1850 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9388 -1.0787 1.0440 32 1 1.0074 0.5876 2.5224 33 1 2.6968 1.0351 2.1846 34 1 -0.5232 0.8874 5.3674 35 1 3.8582 1.0876 4.2288 36 1 3.4177 -0.0814 5.5859 37 1 4.0947 -2.0375 4.1199 38 1 4.5348 -0.8689 2.7628 39 1 2.1846 -2.6016 -0.2597 40 1 2.8129 -0.1297 -4.4620 41 1 2.6929 1.8857 -2.2518 42 1 2.5856 -2.8589 -5.4203 43 1 4.1547 -2.0419 -5.2502 44 1 5.0338 -3.8632 -3.9115 45 1 4.2936 -4.5712 -5.3700 46 1 3.5187 -5.8700 -3.4660 47 1 2.1515 -4.8642 -4.0106 48 1 4.0361 -4.3229 -1.6794 49 1 2.2955 -4.6718 -1.5967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797586946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:02 Heat of formation + Delta-G solvation = -30.496091 kcal Electronic energy + Delta-G solvation = -26771.350029 eV Core-core repulsion = 23276.252472 eV Total energy + Delta-G solvation = -3495.097557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41514 -39.16727 -38.67779 -37.10146 -35.40447 -33.99858 -33.24600 -31.66001 -29.64621 -29.26490 -27.72701 -26.23474 -24.79049 -23.67453 -23.19172 -22.92802 -21.61992 -20.87362 -20.20096 -18.80266 -18.07763 -17.33920 -16.98744 -16.53256 -16.42840 -15.88643 -15.52452 -15.26104 -15.16354 -15.03316 -14.73835 -14.61734 -14.51211 -13.84609 -13.66398 -13.58380 -13.31331 -13.21665 -13.04977 -12.99112 -12.82539 -12.78218 -12.64139 -12.34863 -12.05220 -12.01857 -11.88887 -11.70270 -11.68314 -11.30068 -11.27063 -10.98077 -10.83112 -10.44085 -9.95916 -9.59205 -9.22189 -9.11361 -8.03855 -6.10911 0.30202 0.38935 1.42370 1.45253 1.51108 2.46742 2.63372 3.16223 3.26320 3.31251 3.64602 3.67859 3.82207 3.93847 4.09240 4.15042 4.22645 4.29444 4.33528 4.38742 4.50259 4.56773 4.62918 4.69538 4.70777 4.72925 4.77473 4.84622 4.89695 4.96082 4.96748 5.02093 5.07562 5.09288 5.15925 5.16889 5.20804 5.25517 5.27795 5.34184 5.48390 5.51065 5.57341 5.61616 5.70710 5.73718 5.95843 6.01181 6.36183 6.46462 6.72155 6.83888 6.90892 7.53523 9.03795 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.003522 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.470353 B = 7947.154013 C = 8407.258289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.138 3.862 3 H 0.039 0.961 4 N -0.671 5.671 5 C 0.124 3.876 6 C 0.034 3.966 7 C -0.488 4.488 8 H 0.047 0.953 9 C 0.027 3.973 10 N -0.910 5.910 11 Si 0.943 3.057 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.276 1.276 15 C -0.185 4.185 16 C -0.182 4.182 17 C -0.120 4.120 18 C -0.100 4.100 19 C -0.090 4.090 20 C -0.068 4.068 21 C -0.150 4.150 22 C 0.098 3.902 23 O -0.506 6.506 24 C -0.078 4.078 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.082 4.082 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.336 0.664 32 H 0.055 0.945 33 H -0.004 1.004 34 H 0.257 0.743 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.402 0.598 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.080 0.920 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -5.363 -21.104 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.028 3.972 3 H 0.057 0.943 4 N -0.303 5.303 5 C -0.005 4.005 6 C 0.034 3.966 7 C -0.526 4.526 8 H 0.065 0.935 9 C -0.172 4.172 10 N -0.549 5.549 11 Si 0.770 3.230 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.202 1.202 15 C -0.223 4.223 16 C -0.220 4.220 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.090 4.090 20 C -0.068 4.068 21 C -0.168 4.168 22 C 0.053 3.947 23 O -0.318 6.318 24 C -0.115 4.115 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.119 4.119 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.014 0.986 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.143 0.857 40 H 0.161 0.839 41 H 0.260 0.740 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.041 -5.665 -21.096 22.950 hybrid contribution 0.112 0.828 1.133 1.408 sum 7.153 -4.837 -19.963 21.750 Atomic orbital electron populations 1.21603 0.94530 1.01322 1.00386 1.20095 0.95449 0.94579 0.87067 0.94285 1.60398 1.30898 1.36444 1.02511 1.21196 0.99262 0.91060 0.89017 1.18874 0.87201 0.97151 0.93414 1.20609 1.04184 0.92158 1.35607 0.93469 1.25525 0.99482 0.95798 0.96433 1.70044 1.32128 1.09801 1.42910 0.85856 0.79640 0.78995 0.78555 1.19851 1.21241 1.20169 1.22700 1.07891 0.95101 0.96629 1.22816 1.00325 0.97297 1.01532 1.20167 1.02182 0.95246 0.94515 1.21101 0.98390 0.93381 0.98939 1.19875 0.99733 0.96869 0.92515 1.19781 0.98533 0.92800 0.95671 1.21520 1.01665 0.95116 0.98538 1.18281 0.99567 0.84384 0.92448 1.84784 1.41232 1.13828 1.91932 1.20532 1.00923 0.96924 0.93093 1.21552 0.98311 0.94987 1.00587 1.21552 1.00248 0.99440 0.94227 1.20511 1.02331 0.89990 0.99054 0.94344 0.91953 0.93216 0.84521 0.92610 0.98559 0.93361 0.91166 0.92024 0.90424 0.89486 0.85706 0.83899 0.73976 0.89874 0.89479 0.91781 0.89593 0.90047 0.91933 0.90173 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 9.36 71.98 0.67 -3.80 16 2 C 0.14 4.83 2.58 44.17 0.11 4.94 16 3 H 0.04 1.38 7.37 -2.38 -0.02 1.36 16 4 N -0.67 -26.55 5.47 -495.46 -2.71 -29.26 16 5 C 0.12 5.72 5.29 86.30 0.46 6.17 16 6 C 0.03 1.68 1.51 -52.93 -0.08 1.61 16 7 C -0.49 -26.94 8.84 25.60 0.23 -26.71 16 8 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 9 C 0.03 1.50 5.29 84.66 0.45 1.95 16 10 N -0.91 -52.56 12.37 21.45 0.27 -52.29 16 11 Si 0.94 44.61 29.54 68.60 2.03 46.63 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 15 C -0.18 -8.61 9.88 30.60 0.30 -8.31 16 16 C -0.18 -7.64 9.55 30.60 0.29 -7.35 16 17 C -0.12 -3.64 4.90 -19.84 -0.10 -3.74 16 18 C -0.10 -2.90 8.47 22.35 0.19 -2.71 16 19 C -0.09 -2.15 5.74 -19.83 -0.11 -2.26 16 20 C -0.07 -1.43 5.74 -19.87 -0.11 -1.54 16 21 C -0.15 -3.35 9.55 22.46 0.21 -3.14 16 22 C 0.10 2.61 6.67 22.44 0.15 2.76 16 23 O -0.51 -12.44 12.62 -92.49 -1.17 -13.60 16 24 C -0.08 -1.11 5.67 29.74 0.17 -0.95 16 25 C -0.12 -1.46 5.98 30.61 0.18 -1.27 16 26 C -0.12 -1.69 5.98 30.61 0.18 -1.51 16 27 C -0.08 -1.58 5.67 29.74 0.17 -1.41 16 28 H 0.04 1.58 7.23 -2.39 -0.02 1.56 16 29 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.34 12.35 7.09 -89.69 -0.64 11.71 16 32 H 0.06 2.98 6.14 -2.39 -0.01 2.97 16 33 H 0.00 -0.16 7.92 -2.39 -0.02 -0.18 16 34 H 0.26 14.35 8.32 -92.71 -0.77 13.58 16 35 H 0.07 3.08 8.08 -2.39 -0.02 3.06 16 36 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.09 3.17 8.02 -2.39 -0.02 3.15 16 39 H 0.13 3.97 7.11 -2.91 -0.02 3.94 16 40 H 0.14 2.54 8.05 -2.91 -0.02 2.52 16 41 H 0.40 6.46 9.06 -74.06 -0.67 5.79 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.01 8.12 -2.38 -0.02 0.99 16 44 H 0.06 0.84 8.10 -2.38 -0.02 0.82 16 45 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 48 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 Total: -1.00 -63.43 387.75 1.42 -62.02 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.36 Total: 33.78 kcal Atomic # 6 Polarization: -50.64 SS G_CDS: 3.36 Total: -47.27 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -2.44 Total: -81.55 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.17 Total: -13.60 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.43 1.42 -62.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797586946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.523 kcal (2) G-P(sol) polarization free energy of solvation -63.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds