Wall clock time and date at job start Tue Mar 31 2020 10:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.91814 * 2 1 4 4 C 1.55151 * 111.00550 * 123.90703 * 2 1 3 5 5 C 1.54326 * 102.94313 * 82.56750 * 4 2 1 6 6 H 1.08996 * 109.88384 * 262.77575 * 5 4 2 7 7 C 1.50706 * 110.00929 * 141.68244 * 5 4 2 8 8 C 1.38229 * 119.99957 * 280.39216 * 7 5 4 9 9 C 1.38238 * 119.99718 * 179.81390 * 8 7 5 10 10 C 1.38234 * 119.99882 * 0.38786 * 9 8 7 11 11 C 1.38233 * 120.00046 * 359.86399 * 10 9 8 12 12 C 1.38233 * 120.00067 * 359.95216 * 11 10 9 13 13 N 1.47021 * 107.27002 * 22.19392 * 5 4 2 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 5 4 15 15 O 1.21280 * 119.99974 * 359.97438 * 14 13 5 16 16 C 1.50704 * 120.00087 * 179.97438 * 14 13 5 17 17 C 1.52997 * 109.47157 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46867 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47042 * 179.97438 * 18 17 16 20 20 C 1.50690 * 109.47084 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00393 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99942 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00087 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00086 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47095 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46988 * 120.00198 * 24 22 20 27 27 H 1.48495 * 109.47326 * 240.00328 * 24 22 20 28 28 C 1.47421 * 108.70450 * 1.06211 * 13 5 4 29 29 H 1.08997 * 109.47419 * 182.44000 * 1 2 3 30 30 H 1.08994 * 109.47216 * 302.44818 * 1 2 3 31 31 H 1.09000 * 109.47149 * 62.44521 * 1 2 3 32 32 H 1.09000 * 110.72429 * 200.93704 * 4 2 1 33 33 H 1.09003 * 110.71831 * 324.20826 * 4 2 1 34 34 H 1.07999 * 120.00299 * 359.97438 * 8 7 5 35 35 H 1.08006 * 119.99740 * 180.23186 * 9 8 7 36 36 H 1.07999 * 119.99826 * 179.83877 * 10 9 8 37 37 H 1.08000 * 119.99609 * 179.97438 * 11 10 9 38 38 H 1.07995 * 119.99782 * 180.02562 * 12 11 10 39 39 H 1.09007 * 109.46927 * 300.00894 * 16 14 13 40 40 H 1.09000 * 109.46612 * 60.00404 * 16 14 13 41 41 H 1.09003 * 109.47056 * 300.00306 * 17 16 14 42 42 H 1.09003 * 109.47036 * 60.00235 * 17 16 14 43 43 H 1.08994 * 109.47293 * 299.99878 * 18 17 16 44 44 H 1.09002 * 109.46738 * 60.00658 * 18 17 16 45 45 H 1.09003 * 109.47093 * 300.00425 * 19 18 17 46 46 H 1.09003 * 109.46823 * 60.00246 * 19 18 17 47 47 H 0.97004 * 120.00356 * 179.97438 * 23 22 20 48 48 H 1.09002 * 110.36865 * 217.03325 * 28 13 5 49 49 H 1.09001 * 110.37117 * 94.70643 * 28 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0861 -0.8080 1.2021 5 6 2.0284 -2.2647 0.6958 6 1 1.1218 -2.7480 1.0597 7 6 3.2401 -3.0243 1.1713 8 6 4.4480 -2.8796 0.5150 9 6 5.5603 -3.5734 0.9535 10 6 5.4627 -4.4180 2.0435 11 6 4.2535 -4.5666 2.6966 12 6 3.1421 -3.8699 2.2604 13 7 2.0137 -2.2159 -0.7735 14 6 1.9457 -3.2827 -1.5942 15 8 1.8904 -4.4020 -1.1305 16 6 1.9382 -3.0849 -3.0882 17 6 1.8551 -4.4458 -3.7825 18 6 1.8482 -4.2449 -5.2992 19 6 1.7656 -5.6058 -5.9935 20 6 1.7595 -5.4080 -7.4874 21 1 1.8091 -4.4113 -7.9004 22 6 1.6906 -6.4995 -8.3271 23 7 1.6298 -7.7131 -7.8242 24 14 1.6823 -6.2543 -10.1789 25 1 1.7579 -4.8034 -10.4864 26 1 2.8521 -6.9478 -10.7753 27 1 0.4309 -6.8166 -10.7471 28 6 2.0852 -0.8066 -1.2004 29 1 -0.3634 -1.0267 0.0437 30 1 -0.3633 0.5513 0.8672 31 1 -0.3633 0.4754 -0.9111 32 1 3.1133 -0.5161 1.4209 33 1 1.4523 -0.6793 2.0795 34 1 4.5234 -2.2226 -0.3389 35 1 6.5050 -3.4575 0.4430 36 1 6.3311 -4.9620 2.3845 37 1 4.1773 -5.2268 3.5479 38 1 2.1976 -3.9858 2.7710 39 1 1.0764 -2.4800 -3.3703 40 1 2.8536 -2.5770 -3.3919 41 1 2.7167 -5.0509 -3.5003 42 1 0.9395 -4.9533 -3.4786 43 1 0.9868 -3.6397 -5.5817 44 1 2.7640 -3.7376 -5.6026 45 1 2.6273 -6.2107 -5.7110 46 1 0.8500 -6.1135 -5.6901 47 1 1.5809 -8.4810 -8.4149 48 1 1.4671 -0.6460 -2.0838 49 1 3.1182 -0.5233 -1.4025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807702654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:25 Heat of formation + Delta-G solvation = -37.163009 kcal Electronic energy + Delta-G solvation = -26075.558738 eV Core-core repulsion = 22580.172082 eV Total energy + Delta-G solvation = -3495.386656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79979 -38.84563 -37.78839 -34.85744 -32.96960 -32.74887 -32.12155 -30.96143 -29.62329 -28.53101 -26.93850 -25.71216 -23.83017 -22.73006 -22.35303 -21.32076 -20.37998 -19.91667 -18.97737 -17.31225 -16.84043 -16.21240 -16.12630 -15.45794 -15.40012 -14.83547 -14.60520 -14.37182 -14.31005 -14.03122 -13.68261 -13.47696 -13.34212 -13.06645 -12.62478 -12.59938 -12.39712 -12.31843 -12.01256 -11.66519 -11.61359 -11.54947 -11.26486 -11.24797 -11.02815 -10.99779 -10.95133 -10.49901 -10.46129 -10.37285 -9.73525 -9.58256 -9.20091 -8.99653 -8.96226 -8.89096 -8.63885 -8.28668 -5.93162 -3.95565 1.23859 1.32786 2.78377 2.90767 3.34391 3.41452 3.45453 3.68830 4.06769 4.23009 4.44119 4.50643 4.61824 4.77094 4.82911 4.87108 4.97375 5.00923 5.10643 5.14152 5.23175 5.33209 5.36415 5.39527 5.41833 5.42289 5.47998 5.52007 5.61155 5.67552 5.69645 5.86992 5.88040 5.91430 5.97263 6.16645 6.17785 6.34979 6.36190 6.42082 6.52685 6.59217 6.87702 6.90556 7.05447 7.23215 7.49176 7.76979 7.93103 8.08607 8.30595 8.50443 9.12442 9.67964 11.18211 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.002666 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.229736 B =10501.370023 C =11752.063350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.118 4.118 5 C 0.178 3.822 6 H 0.080 0.920 7 C -0.082 4.082 8 C -0.101 4.101 9 C -0.120 4.120 10 C -0.122 4.122 11 C -0.120 4.120 12 C -0.107 4.107 13 N -0.619 5.619 14 C 0.528 3.472 15 O -0.524 6.524 16 C -0.133 4.133 17 C -0.103 4.103 18 C -0.109 4.109 19 C 0.020 3.980 20 C -0.519 4.519 21 H 0.055 0.945 22 C 0.055 3.945 23 N -0.895 5.895 24 Si 0.891 3.109 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.102 3.898 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.082 0.918 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 18.228 23.554 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 H 0.110 0.890 4 C -0.156 4.156 5 C 0.074 3.926 6 H 0.098 0.902 7 C -0.083 4.083 8 C -0.120 4.120 9 C -0.138 4.138 10 C -0.141 4.141 11 C -0.138 4.138 12 C -0.125 4.125 13 N -0.355 5.355 14 C 0.317 3.683 15 O -0.398 6.398 16 C -0.173 4.173 17 C -0.141 4.141 18 C -0.147 4.147 19 C -0.017 4.017 20 C -0.557 4.557 21 H 0.073 0.927 22 C -0.146 4.146 23 N -0.535 5.535 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.022 4.022 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.100 0.900 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.050 17.346 23.671 29.504 hybrid contribution 0.065 -0.022 -1.090 1.093 sum 3.114 17.324 22.581 28.630 Atomic orbital electron populations 1.21763 0.93931 1.02415 1.02061 1.22367 0.96590 0.99141 0.94293 0.88997 1.22778 1.02332 0.92390 0.98123 1.20378 0.95645 0.95501 0.81045 0.90169 1.20008 0.94786 0.97666 0.95866 1.20871 0.92315 0.99672 0.99097 1.21126 0.98546 0.97173 0.96954 1.21126 0.97774 0.98812 0.96344 1.21083 0.93006 0.99540 1.00148 1.20926 0.98534 0.96293 0.96779 1.48676 1.74912 1.06453 1.05497 1.20796 0.75208 0.83126 0.89134 1.90726 1.48295 1.23177 1.77620 1.21778 1.03682 1.01957 0.89845 1.21455 1.02881 0.93593 0.96155 1.21640 0.99999 1.01097 0.91948 1.19097 0.97278 0.90892 0.94470 1.21321 1.50033 0.92615 0.91763 0.92718 1.25047 0.95505 0.95312 0.98750 1.69987 1.50889 0.97827 1.34754 0.86561 0.77537 0.78152 0.85888 1.19779 1.21063 1.21057 1.22427 1.01053 0.80758 0.97917 0.92302 0.92303 0.92115 0.90212 0.89810 0.86606 0.86228 0.86285 0.86194 0.86321 0.89335 0.89392 0.91861 0.91850 0.93522 0.93533 0.96608 0.96607 0.93116 0.90015 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.24 37.16 0.34 -0.54 16 2 C -0.10 -0.62 3.72 -88.47 -0.33 -0.95 16 3 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 4 C -0.12 -0.79 5.97 -24.90 -0.15 -0.94 16 5 C 0.18 1.80 2.66 -68.10 -0.18 1.62 16 6 H 0.08 0.88 8.03 -51.93 -0.42 0.47 16 7 C -0.08 -0.95 4.09 -104.62 -0.43 -1.38 16 8 C -0.10 -1.18 9.14 -39.58 -0.36 -1.55 16 9 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 10 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 11 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 12 C -0.11 -1.19 9.68 -39.58 -0.38 -1.57 16 13 N -0.62 -6.87 2.30 -164.32 -0.38 -7.25 16 14 C 0.53 7.88 7.47 -10.98 -0.08 7.80 16 15 O -0.52 -10.08 15.81 5.56 0.09 -9.99 16 16 C -0.13 -1.88 4.71 -27.88 -0.13 -2.01 16 17 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 18 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 19 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 20 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 21 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 24 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.10 0.77 6.15 -2.53 -0.02 0.76 16 29 H 0.06 0.46 7.81 -51.93 -0.41 0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.53 7.82 -51.93 -0.41 0.12 16 33 H 0.08 0.47 8.05 -51.93 -0.42 0.05 16 34 H 0.12 1.28 7.68 -52.49 -0.40 0.87 16 35 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.12 8.05 -52.49 -0.42 0.70 16 39 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.08 0.58 7.39 -51.93 -0.38 0.20 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 396.79 15.07 5.98 5.98 Total: -1.00 -34.85 396.79 -11.03 -45.89 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.72 Total: -2.71 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -3.72 Total: -21.88 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.36 Total: -34.36 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.85 -11.03 -45.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807702654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.722 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds