Wall clock time and date at job start Tue Mar 31 2020 10:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.91814 * 2 1 4 4 C 1.55151 * 111.00550 * 123.90703 * 2 1 3 5 5 C 1.54326 * 102.94313 * 82.56750 * 4 2 1 6 6 H 1.08996 * 109.88384 * 262.77575 * 5 4 2 7 7 C 1.50706 * 110.00929 * 141.68244 * 5 4 2 8 8 C 1.38229 * 119.99957 * 280.39216 * 7 5 4 9 9 C 1.38238 * 119.99718 * 179.81390 * 8 7 5 10 10 C 1.38234 * 119.99882 * 0.38786 * 9 8 7 11 11 C 1.38233 * 120.00046 * 359.86399 * 10 9 8 12 12 C 1.38233 * 120.00067 * 359.95216 * 11 10 9 13 13 N 1.47021 * 107.27002 * 22.19392 * 5 4 2 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 5 4 15 15 O 1.21280 * 119.99974 * 359.97438 * 14 13 5 16 16 C 1.50704 * 120.00087 * 179.97438 * 14 13 5 17 17 C 1.52997 * 109.47157 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46867 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47042 * 179.97438 * 18 17 16 20 20 C 1.50690 * 109.47084 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00393 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99942 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00087 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00086 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47095 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46988 * 120.00198 * 24 22 20 27 27 H 1.48495 * 109.47326 * 240.00328 * 24 22 20 28 28 C 1.47421 * 108.70450 * 1.06211 * 13 5 4 29 29 H 1.08997 * 109.47419 * 182.44000 * 1 2 3 30 30 H 1.08994 * 109.47216 * 302.44818 * 1 2 3 31 31 H 1.09000 * 109.47149 * 62.44521 * 1 2 3 32 32 H 1.09000 * 110.72429 * 200.93704 * 4 2 1 33 33 H 1.09003 * 110.71831 * 324.20826 * 4 2 1 34 34 H 1.07999 * 120.00299 * 359.97438 * 8 7 5 35 35 H 1.08006 * 119.99740 * 180.23186 * 9 8 7 36 36 H 1.07999 * 119.99826 * 179.83877 * 10 9 8 37 37 H 1.08000 * 119.99609 * 179.97438 * 11 10 9 38 38 H 1.07995 * 119.99782 * 180.02562 * 12 11 10 39 39 H 1.09007 * 109.46927 * 300.00894 * 16 14 13 40 40 H 1.09000 * 109.46612 * 60.00404 * 16 14 13 41 41 H 1.09003 * 109.47056 * 300.00306 * 17 16 14 42 42 H 1.09003 * 109.47036 * 60.00235 * 17 16 14 43 43 H 1.08994 * 109.47293 * 299.99878 * 18 17 16 44 44 H 1.09002 * 109.46738 * 60.00658 * 18 17 16 45 45 H 1.09003 * 109.47093 * 300.00425 * 19 18 17 46 46 H 1.09003 * 109.46823 * 60.00246 * 19 18 17 47 47 H 0.97004 * 120.00356 * 179.97438 * 23 22 20 48 48 H 1.09002 * 110.36865 * 217.03325 * 28 13 5 49 49 H 1.09001 * 110.37117 * 94.70643 * 28 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0861 -0.8080 1.2021 5 6 2.0284 -2.2647 0.6958 6 1 1.1218 -2.7480 1.0597 7 6 3.2401 -3.0243 1.1713 8 6 4.4480 -2.8796 0.5150 9 6 5.5603 -3.5734 0.9535 10 6 5.4627 -4.4180 2.0435 11 6 4.2535 -4.5666 2.6966 12 6 3.1421 -3.8699 2.2604 13 7 2.0137 -2.2159 -0.7735 14 6 1.9457 -3.2827 -1.5942 15 8 1.8904 -4.4020 -1.1305 16 6 1.9382 -3.0849 -3.0882 17 6 1.8551 -4.4458 -3.7825 18 6 1.8482 -4.2449 -5.2992 19 6 1.7656 -5.6058 -5.9935 20 6 1.7595 -5.4080 -7.4874 21 1 1.8091 -4.4113 -7.9004 22 6 1.6906 -6.4995 -8.3271 23 7 1.6298 -7.7131 -7.8242 24 14 1.6823 -6.2543 -10.1789 25 1 1.7579 -4.8034 -10.4864 26 1 2.8521 -6.9478 -10.7753 27 1 0.4309 -6.8166 -10.7471 28 6 2.0852 -0.8066 -1.2004 29 1 -0.3634 -1.0267 0.0437 30 1 -0.3633 0.5513 0.8672 31 1 -0.3633 0.4754 -0.9111 32 1 3.1133 -0.5161 1.4209 33 1 1.4523 -0.6793 2.0795 34 1 4.5234 -2.2226 -0.3389 35 1 6.5050 -3.4575 0.4430 36 1 6.3311 -4.9620 2.3845 37 1 4.1773 -5.2268 3.5479 38 1 2.1976 -3.9858 2.7710 39 1 1.0764 -2.4800 -3.3703 40 1 2.8536 -2.5770 -3.3919 41 1 2.7167 -5.0509 -3.5003 42 1 0.9395 -4.9533 -3.4786 43 1 0.9868 -3.6397 -5.5817 44 1 2.7640 -3.7376 -5.6026 45 1 2.6273 -6.2107 -5.7110 46 1 0.8500 -6.1135 -5.6901 47 1 1.5809 -8.4810 -8.4149 48 1 1.4671 -0.6460 -2.0838 49 1 3.1182 -0.5233 -1.4025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807702654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:24 Heat of formation + Delta-G solvation = -54.944250 kcal Electronic energy + Delta-G solvation = -26076.329790 eV Core-core repulsion = 22580.172082 eV Total energy + Delta-G solvation = -3496.157709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66615 -39.80460 -38.67319 -36.63176 -34.64468 -33.70443 -33.18459 -31.79565 -31.28511 -29.29946 -27.65658 -27.36851 -24.96499 -23.87885 -23.44879 -22.35994 -21.72298 -20.94500 -19.92503 -18.43616 -18.19707 -17.78495 -17.07142 -16.64692 -16.51409 -16.29439 -15.69349 -15.48625 -15.22200 -14.87692 -14.59641 -14.44058 -14.30435 -14.25903 -13.91771 -13.66555 -13.63004 -13.34674 -13.30718 -12.96357 -12.87074 -12.83764 -12.31791 -12.29800 -12.17447 -12.15631 -11.96876 -11.79694 -11.68359 -11.59076 -11.40569 -11.35171 -11.13522 -10.75223 -10.56667 -9.84158 -9.78844 -9.49957 -8.19336 -6.31750 0.41090 0.48550 1.39926 1.41141 1.54650 1.66065 1.99155 2.41502 2.86280 3.13359 3.45572 3.56893 3.75941 3.87947 3.96813 4.01373 4.05972 4.11827 4.13111 4.23210 4.30533 4.40810 4.56631 4.62836 4.63912 4.66200 4.69958 4.72270 4.80507 4.84178 4.88666 4.92093 5.04663 5.10723 5.14066 5.16042 5.16640 5.23172 5.29865 5.34252 5.37608 5.49744 5.54271 5.55360 5.59452 5.68913 5.76154 5.86695 6.10071 6.24319 6.52914 6.86795 7.21400 7.37978 8.93254 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.002666 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.229736 B =10501.370023 C =11752.063350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.120 0.880 4 C -0.109 4.109 5 C 0.173 3.827 6 H 0.064 0.936 7 C -0.094 4.094 8 C -0.117 4.117 9 C -0.133 4.133 10 C -0.133 4.133 11 C -0.128 4.128 12 C -0.126 4.126 13 N -0.611 5.611 14 C 0.524 3.476 15 O -0.581 6.581 16 C -0.122 4.122 17 C -0.093 4.093 18 C -0.094 4.094 19 C 0.019 3.981 20 C -0.540 4.540 21 H 0.067 0.933 22 C -0.008 4.008 23 N -0.938 5.938 24 Si 0.971 3.029 25 H -0.256 1.256 26 H -0.279 1.279 27 H -0.279 1.279 28 C 0.090 3.910 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.060 0.940 45 H -0.017 1.017 46 H -0.016 1.016 47 H 0.263 0.737 48 H 0.093 0.907 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 21.498 23.077 31.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.138 0.862 4 C -0.146 4.146 5 C 0.070 3.930 6 H 0.083 0.917 7 C -0.095 4.095 8 C -0.135 4.135 9 C -0.151 4.151 10 C -0.151 4.151 11 C -0.146 4.146 12 C -0.144 4.144 13 N -0.344 5.344 14 C 0.314 3.686 15 O -0.460 6.460 16 C -0.161 4.161 17 C -0.132 4.132 18 C -0.131 4.131 19 C -0.018 4.018 20 C -0.578 4.578 21 H 0.085 0.915 22 C -0.205 4.205 23 N -0.579 5.579 24 Si 0.795 3.205 25 H -0.180 1.180 26 H -0.205 1.205 27 H -0.204 1.204 28 C -0.031 4.031 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.001 0.999 46 H 0.002 0.998 47 H 0.072 0.928 48 H 0.111 0.889 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.414 20.690 23.214 31.283 hybrid contribution -0.053 -1.072 -0.869 1.381 sum 3.361 19.618 22.345 29.924 Atomic orbital electron populations 1.21765 0.94126 1.01220 1.03000 1.22382 0.96292 0.99983 0.92637 0.86218 1.22761 1.03124 0.89829 0.98919 1.20526 0.94449 0.97632 0.80417 0.91744 1.20226 0.95263 0.97951 0.96049 1.21021 0.92685 1.00353 0.99488 1.21423 0.99129 0.97216 0.97329 1.21445 0.98579 0.98845 0.96236 1.21407 0.92891 0.99548 1.00722 1.21202 0.99324 0.96655 0.97253 1.48632 1.72726 1.07207 1.05837 1.20854 0.74905 0.83146 0.89711 1.90704 1.51320 1.25515 1.78478 1.21639 1.06121 0.99238 0.89120 1.21226 1.00755 0.96137 0.95035 1.21433 1.01298 0.97585 0.92793 1.19050 0.94211 0.93639 0.94882 1.21773 1.49985 0.93318 0.92757 0.91497 1.26114 0.94766 0.94836 1.04760 1.70144 1.51765 0.98976 1.37020 0.85317 0.77698 0.78969 0.78555 1.17984 1.20463 1.20437 1.22793 1.02525 0.78600 0.99181 0.94563 0.91074 0.91508 0.89647 0.88463 0.86224 0.84812 0.84288 0.84258 0.85453 0.86689 0.86866 0.94226 0.94035 0.91985 0.92081 0.99867 0.99802 0.92850 0.88920 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.24 71.98 0.66 -0.73 16 2 C -0.09 -0.81 3.72 -9.40 -0.03 -0.84 16 3 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 4 C -0.11 -1.23 5.97 31.78 0.19 -1.04 16 5 C 0.17 3.43 2.66 44.60 0.12 3.55 16 6 H 0.06 1.47 8.03 -2.39 -0.02 1.45 16 7 C -0.09 -2.18 4.09 -19.87 -0.08 -2.26 16 8 C -0.12 -2.71 9.14 22.27 0.20 -2.51 16 9 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 10 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 11 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 12 C -0.13 -2.85 9.68 22.27 0.22 -2.64 16 13 N -0.61 -12.93 2.30 -792.16 -1.82 -14.75 16 14 C 0.52 15.63 7.47 87.66 0.65 16.29 16 15 O -0.58 -23.41 15.81 -3.03 -0.05 -23.46 16 16 C -0.12 -3.29 4.71 29.85 0.14 -3.15 16 17 C -0.09 -3.57 4.50 30.59 0.14 -3.43 16 18 C -0.09 -3.94 5.15 30.60 0.16 -3.78 16 19 C 0.02 1.09 4.97 29.85 0.15 1.23 16 20 C -0.54 -31.79 9.11 25.60 0.23 -31.55 16 21 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 22 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 23 N -0.94 -59.86 13.29 21.45 0.28 -59.57 16 24 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 C 0.09 1.12 6.15 86.86 0.53 1.65 16 29 H 0.04 0.52 7.81 -2.39 -0.02 0.50 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.91 7.82 -2.39 -0.02 0.90 16 33 H 0.10 0.86 8.05 -2.39 -0.02 0.84 16 34 H 0.12 2.54 7.68 -2.91 -0.02 2.52 16 35 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.13 2.49 8.05 -2.91 -0.02 2.47 16 39 H 0.12 2.52 7.85 -2.38 -0.02 2.50 16 40 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 42 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 43 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 45 H -0.02 -1.06 8.14 -2.39 -0.02 -1.07 16 46 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 47 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 48 H 0.09 0.99 7.39 -2.39 -0.02 0.97 16 49 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -79.19 396.79 5.74 -73.45 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.89 Total: 13.94 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 4.42 Total: -36.87 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.54 Total: -74.33 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -79.19 5.74 -73.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807702654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.505 kcal (2) G-P(sol) polarization free energy of solvation -79.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds