Wall clock time and date at job start Tue Mar 31 2020 10:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.91163 * 2 1 4 4 C 1.55154 * 111.00076 * 236.09645 * 2 1 3 5 5 C 1.54320 * 102.94290 * 206.42187 * 4 2 1 6 6 H 1.09006 * 110.01271 * 262.70739 * 5 4 2 7 7 C 1.50696 * 109.88587 * 141.60809 * 5 4 2 8 8 C 1.38230 * 120.00196 * 280.46829 * 7 5 4 9 9 C 1.38237 * 120.00095 * 179.78323 * 8 7 5 10 10 C 1.38247 * 119.99668 * 0.46504 * 9 8 7 11 11 C 1.38232 * 119.99980 * 359.77031 * 10 9 8 12 12 C 1.38230 * 120.00050 * 0.02562 * 11 10 9 13 13 N 1.47025 * 107.26736 * 22.19279 * 5 4 2 14 14 C 1.34779 * 125.64628 * 181.02409 * 13 5 4 15 15 O 1.21281 * 120.00062 * 359.97438 * 14 13 5 16 16 C 1.50698 * 120.00201 * 180.02562 * 14 13 5 17 17 C 1.52997 * 109.47342 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46978 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.47197 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47088 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99572 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 C 1.47423 * 108.70430 * 1.28930 * 13 5 4 29 29 H 1.08996 * 109.46905 * 183.90728 * 1 2 3 30 30 H 1.09008 * 109.47048 * 303.90155 * 1 2 3 31 31 H 1.08998 * 109.47275 * 63.90009 * 1 2 3 32 32 H 1.09001 * 110.72133 * 88.06057 * 4 2 1 33 33 H 1.09000 * 110.87523 * 324.85673 * 4 2 1 34 34 H 1.07997 * 120.00325 * 359.97438 * 8 7 5 35 35 H 1.07996 * 120.00539 * 180.25303 * 9 8 7 36 36 H 1.07995 * 119.99765 * 179.78938 * 10 9 8 37 37 H 1.07999 * 119.99754 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.00215 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47210 * 59.99599 * 16 14 13 40 40 H 1.09001 * 109.46665 * 299.99857 * 16 14 13 41 41 H 1.09002 * 109.46777 * 60.00285 * 17 16 14 42 42 H 1.09001 * 109.47375 * 299.99730 * 17 16 14 43 43 H 1.09002 * 109.47097 * 60.00199 * 18 17 16 44 44 H 1.09001 * 109.47600 * 299.99959 * 18 17 16 45 45 H 1.09002 * 109.46935 * 60.00099 * 19 18 17 46 46 H 1.08998 * 109.47061 * 300.00893 * 19 18 17 47 47 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 48 48 H 1.08995 * 110.36365 * 94.48539 * 28 13 5 49 49 H 1.09007 * 110.36282 * 216.80170 * 28 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0861 -0.8080 -1.2022 5 6 3.4674 -1.2742 -0.6961 6 1 4.2444 -0.6018 -1.0599 7 6 3.7406 -2.6778 -1.1716 8 6 3.1714 -3.7530 -0.5153 9 6 3.4183 -5.0403 -0.9543 10 6 4.2423 -5.2529 -2.0438 11 6 4.8154 -4.1779 -2.6971 12 6 4.5650 -2.8905 -2.2607 13 7 3.4271 -1.2430 0.7733 14 6 4.4477 -1.5615 1.5939 15 8 5.5125 -1.9106 1.1301 16 6 4.2654 -1.4849 3.0879 17 6 5.5655 -1.8955 3.7821 18 6 5.3805 -1.8171 5.2989 19 6 6.6809 -2.2271 5.9931 20 6 6.4985 -2.1505 7.4870 21 1 5.5499 -1.8408 7.9001 22 6 7.5427 -2.4758 8.3266 23 7 8.6980 -2.8525 7.8236 24 14 7.3165 -2.3816 10.1784 25 1 6.2248 -3.2999 10.5911 26 1 6.9659 -0.9911 10.5642 27 1 8.5786 -2.7794 10.8522 28 6 2.0836 -0.8119 1.2003 29 1 -0.3633 -1.0253 0.0700 30 1 -0.3633 0.5732 0.8530 31 1 -0.3634 0.4521 -0.9228 32 1 2.1921 -0.1700 -2.0796 33 1 1.4478 -1.6633 -1.4239 34 1 2.5312 -3.5872 0.3385 35 1 2.9704 -5.8802 -0.4441 36 1 4.4380 -6.2588 -2.3846 37 1 5.4588 -4.3440 -3.5485 38 1 5.0131 -2.0505 -2.7709 39 1 3.4637 -2.1583 3.3911 40 1 4.0088 -0.4640 3.3707 41 1 6.3675 -1.2224 3.4790 42 1 5.8217 -2.9166 3.4993 43 1 4.5784 -2.4900 5.6023 44 1 5.1246 -0.7960 5.5815 45 1 7.4827 -1.5540 5.6896 46 1 6.9373 -3.2481 5.7105 47 1 8.8154 -2.9018 6.8620 48 1 1.4525 -1.6781 1.3988 49 1 2.1516 -0.1801 2.0861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807702655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:28 Heat of formation + Delta-G solvation = -41.971147 kcal Electronic energy + Delta-G solvation = -25995.613144 eV Core-core repulsion = 22500.017991 eV Total energy + Delta-G solvation = -3495.595153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78913 -38.88799 -37.78263 -35.05656 -33.26590 -32.93639 -32.18583 -30.99560 -29.56513 -28.66775 -26.66884 -25.34551 -23.72883 -22.76633 -22.37787 -21.17082 -20.77320 -20.16258 -19.05985 -17.18946 -17.08440 -16.60771 -16.33951 -15.64922 -15.41710 -14.98151 -14.49645 -14.30032 -14.00087 -13.68929 -13.64504 -13.51601 -13.44932 -13.03977 -12.87141 -12.76504 -12.65749 -12.36825 -12.21013 -12.14566 -11.70028 -11.39501 -11.22075 -11.08619 -11.04126 -10.98409 -10.90547 -10.62380 -10.54948 -10.07808 -9.84468 -9.71969 -9.50694 -9.03221 -8.96164 -8.68757 -8.44196 -8.25302 -6.28662 -3.97158 1.20303 1.29393 2.71774 2.84599 3.46962 3.49606 3.65283 3.68391 4.02629 4.21502 4.34810 4.58736 4.60682 4.72876 4.80433 4.86939 4.92212 4.96972 5.03688 5.08877 5.14867 5.27373 5.29106 5.33232 5.35301 5.41960 5.45197 5.48713 5.51764 5.60604 5.69816 5.79067 5.83865 5.87507 5.92546 6.06831 6.09974 6.24086 6.32708 6.38701 6.45213 6.50475 6.74242 6.87110 6.90809 7.07037 7.43039 7.52536 7.65454 8.23844 8.30903 8.54471 8.96612 9.75645 11.12098 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.002633 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.725198 B =10632.955000 C =11876.740039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.118 4.118 5 C 0.176 3.824 6 H 0.082 0.918 7 C -0.082 4.082 8 C -0.102 4.102 9 C -0.120 4.120 10 C -0.122 4.122 11 C -0.120 4.120 12 C -0.107 4.107 13 N -0.621 5.621 14 C 0.528 3.472 15 O -0.524 6.524 16 C -0.133 4.133 17 C -0.104 4.104 18 C -0.102 4.102 19 C 0.007 3.993 20 C -0.602 4.602 21 H 0.047 0.953 22 C 0.012 3.988 23 N -0.915 5.915 24 Si 1.069 2.931 25 H -0.288 1.288 26 H -0.288 1.288 27 H -0.283 1.283 28 C 0.102 3.898 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.006 0.994 46 H 0.006 0.994 47 H 0.269 0.731 48 H 0.069 0.931 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.253 3.358 -23.653 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.156 4.156 5 C 0.073 3.927 6 H 0.099 0.901 7 C -0.084 4.084 8 C -0.120 4.120 9 C -0.138 4.138 10 C -0.140 4.140 11 C -0.138 4.138 12 C -0.125 4.125 13 N -0.357 5.357 14 C 0.318 3.682 15 O -0.398 6.398 16 C -0.172 4.172 17 C -0.142 4.142 18 C -0.140 4.140 19 C -0.030 4.030 20 C -0.640 4.640 21 H 0.066 0.934 22 C -0.191 4.191 23 N -0.551 5.551 24 Si 0.897 3.103 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.208 1.208 28 C -0.021 4.021 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.025 0.975 46 H 0.025 0.975 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.801 2.918 -22.373 28.739 hybrid contribution -0.809 0.190 -1.460 1.680 sum -18.610 3.108 -23.833 30.397 Atomic orbital electron populations 1.21703 0.93519 1.02367 1.02311 1.22413 0.96339 0.99436 0.94234 0.89453 1.22791 0.94410 1.00308 0.98103 1.20415 0.98160 0.93196 0.80954 0.90051 1.20002 0.97464 0.94982 0.95903 1.20868 0.99773 0.92240 0.99102 1.21129 0.98862 0.96842 0.96973 1.21133 0.97707 0.98864 0.96324 1.21087 0.99882 0.92651 1.00142 1.20933 0.97672 0.97154 0.96760 1.48687 1.12612 1.68796 1.05594 1.20773 0.82400 0.75968 0.89106 1.90724 1.25800 1.45703 1.77620 1.21760 1.01991 1.03586 0.89905 1.21467 0.94587 1.02027 0.96101 1.21512 1.00439 1.00268 0.91780 1.19217 0.92353 0.95639 0.95778 1.22084 1.00440 1.49846 0.91655 0.93433 1.25863 0.92855 0.93854 1.06573 1.70764 1.24665 1.44342 1.15331 0.83552 0.75732 0.76341 0.74637 1.21504 1.21498 1.20790 1.22486 0.83366 0.98340 0.97931 0.92225 0.92044 0.92062 0.89877 0.90098 0.86651 0.86215 0.86251 0.86156 0.86284 0.89324 0.89251 0.91883 0.91890 0.93342 0.93330 0.97522 0.97532 0.92031 0.91237 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.31 37.16 0.35 -0.29 16 2 C -0.11 -0.63 3.65 -88.35 -0.32 -0.95 16 3 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -0.80 5.93 -24.90 -0.15 -0.95 16 5 C 0.18 1.80 3.05 -68.11 -0.21 1.59 16 6 H 0.08 0.89 8.03 -51.93 -0.42 0.48 16 7 C -0.08 -0.95 4.08 -104.62 -0.43 -1.38 16 8 C -0.10 -1.19 9.14 -39.58 -0.36 -1.55 16 9 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 10 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 11 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 12 C -0.11 -1.18 9.68 -39.58 -0.38 -1.57 16 13 N -0.62 -6.99 2.31 -164.19 -0.38 -7.37 16 14 C 0.53 7.93 7.47 -10.99 -0.08 7.85 16 15 O -0.52 -10.09 15.82 5.56 0.09 -10.00 16 16 C -0.13 -1.89 4.70 -27.89 -0.13 -2.02 16 17 C -0.10 -1.94 4.50 -26.73 -0.12 -2.06 16 18 C -0.10 -2.19 5.15 -26.73 -0.14 -2.33 16 19 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 20 C -0.60 -17.88 9.11 -34.44 -0.31 -18.20 16 21 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 22 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 23 N -0.91 -29.25 13.65 55.43 0.76 -28.49 16 24 Si 1.07 26.04 29.90 -169.99 -5.08 20.95 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.10 0.79 6.16 -2.41 -0.01 0.77 16 29 H 0.06 0.27 8.07 -51.93 -0.42 -0.15 16 30 H 0.06 0.26 8.14 -51.92 -0.42 -0.17 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.55 7.71 -51.93 -0.40 0.15 16 34 H 0.12 1.28 7.68 -52.49 -0.40 0.88 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.12 1.12 8.05 -52.48 -0.42 0.70 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 46 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 47 H 0.27 8.63 7.22 -40.82 -0.29 8.34 16 48 H 0.07 0.49 7.99 -51.93 -0.41 0.07 16 49 H 0.08 0.58 7.48 -51.92 -0.39 0.19 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -35.73 396.04 -11.03 -46.77 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.67 Total: -2.02 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -3.71 Total: -25.80 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.38 Total: -35.86 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.73 -11.03 -46.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807702655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.794 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds