Wall clock time and date at job start Tue Mar 31 2020 10:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.91163 * 2 1 4 4 C 1.55154 * 111.00076 * 236.09645 * 2 1 3 5 5 C 1.54320 * 102.94290 * 206.42187 * 4 2 1 6 6 H 1.09006 * 110.01271 * 262.70739 * 5 4 2 7 7 C 1.50696 * 109.88587 * 141.60809 * 5 4 2 8 8 C 1.38230 * 120.00196 * 280.46829 * 7 5 4 9 9 C 1.38237 * 120.00095 * 179.78323 * 8 7 5 10 10 C 1.38247 * 119.99668 * 0.46504 * 9 8 7 11 11 C 1.38232 * 119.99980 * 359.77031 * 10 9 8 12 12 C 1.38230 * 120.00050 * 0.02562 * 11 10 9 13 13 N 1.47025 * 107.26736 * 22.19279 * 5 4 2 14 14 C 1.34779 * 125.64628 * 181.02409 * 13 5 4 15 15 O 1.21281 * 120.00062 * 359.97438 * 14 13 5 16 16 C 1.50698 * 120.00201 * 180.02562 * 14 13 5 17 17 C 1.52997 * 109.47342 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46978 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.47197 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47088 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99572 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 C 1.47423 * 108.70430 * 1.28930 * 13 5 4 29 29 H 1.08996 * 109.46905 * 183.90728 * 1 2 3 30 30 H 1.09008 * 109.47048 * 303.90155 * 1 2 3 31 31 H 1.08998 * 109.47275 * 63.90009 * 1 2 3 32 32 H 1.09001 * 110.72133 * 88.06057 * 4 2 1 33 33 H 1.09000 * 110.87523 * 324.85673 * 4 2 1 34 34 H 1.07997 * 120.00325 * 359.97438 * 8 7 5 35 35 H 1.07996 * 120.00539 * 180.25303 * 9 8 7 36 36 H 1.07995 * 119.99765 * 179.78938 * 10 9 8 37 37 H 1.07999 * 119.99754 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.00215 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47210 * 59.99599 * 16 14 13 40 40 H 1.09001 * 109.46665 * 299.99857 * 16 14 13 41 41 H 1.09002 * 109.46777 * 60.00285 * 17 16 14 42 42 H 1.09001 * 109.47375 * 299.99730 * 17 16 14 43 43 H 1.09002 * 109.47097 * 60.00199 * 18 17 16 44 44 H 1.09001 * 109.47600 * 299.99959 * 18 17 16 45 45 H 1.09002 * 109.46935 * 60.00099 * 19 18 17 46 46 H 1.08998 * 109.47061 * 300.00893 * 19 18 17 47 47 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 48 48 H 1.08995 * 110.36365 * 94.48539 * 28 13 5 49 49 H 1.09007 * 110.36282 * 216.80170 * 28 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0861 -0.8080 -1.2022 5 6 3.4674 -1.2742 -0.6961 6 1 4.2444 -0.6018 -1.0599 7 6 3.7406 -2.6778 -1.1716 8 6 3.1714 -3.7530 -0.5153 9 6 3.4183 -5.0403 -0.9543 10 6 4.2423 -5.2529 -2.0438 11 6 4.8154 -4.1779 -2.6971 12 6 4.5650 -2.8905 -2.2607 13 7 3.4271 -1.2430 0.7733 14 6 4.4477 -1.5615 1.5939 15 8 5.5125 -1.9106 1.1301 16 6 4.2654 -1.4849 3.0879 17 6 5.5655 -1.8955 3.7821 18 6 5.3805 -1.8171 5.2989 19 6 6.6809 -2.2271 5.9931 20 6 6.4985 -2.1505 7.4870 21 1 5.5499 -1.8408 7.9001 22 6 7.5427 -2.4758 8.3266 23 7 8.6980 -2.8525 7.8236 24 14 7.3165 -2.3816 10.1784 25 1 6.2248 -3.2999 10.5911 26 1 6.9659 -0.9911 10.5642 27 1 8.5786 -2.7794 10.8522 28 6 2.0836 -0.8119 1.2003 29 1 -0.3633 -1.0253 0.0700 30 1 -0.3633 0.5732 0.8530 31 1 -0.3634 0.4521 -0.9228 32 1 2.1921 -0.1700 -2.0796 33 1 1.4478 -1.6633 -1.4239 34 1 2.5312 -3.5872 0.3385 35 1 2.9704 -5.8802 -0.4441 36 1 4.4380 -6.2588 -2.3846 37 1 5.4588 -4.3440 -3.5485 38 1 5.0131 -2.0505 -2.7709 39 1 3.4637 -2.1583 3.3911 40 1 4.0088 -0.4640 3.3707 41 1 6.3675 -1.2224 3.4790 42 1 5.8217 -2.9166 3.4993 43 1 4.5784 -2.4900 5.6023 44 1 5.1246 -0.7960 5.5815 45 1 7.4827 -1.5540 5.6896 46 1 6.9373 -3.2481 5.7105 47 1 8.8154 -2.9018 6.8620 48 1 1.4525 -1.6781 1.3988 49 1 2.1516 -0.1801 2.0861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807702655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:27 Heat of formation + Delta-G solvation = -60.381462 kcal Electronic energy + Delta-G solvation = -25996.411475 eV Core-core repulsion = 22500.017991 eV Total energy + Delta-G solvation = -3496.393484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67087 -39.85469 -38.65410 -36.89741 -34.83389 -33.96205 -33.21220 -31.82171 -31.16942 -29.47542 -27.42461 -26.97461 -24.90887 -23.99984 -23.51885 -22.35360 -21.77702 -21.27490 -20.03356 -18.85221 -18.10235 -17.96723 -17.24782 -16.85240 -16.34137 -15.74643 -15.65831 -15.60967 -15.42785 -15.14651 -14.65377 -14.52530 -14.31478 -14.12402 -14.09536 -13.88827 -13.64483 -13.45944 -13.22016 -12.94390 -12.86221 -12.69126 -12.38437 -12.31289 -12.23079 -12.04946 -11.96021 -11.87131 -11.68010 -11.60408 -11.56056 -11.51731 -10.92763 -10.62484 -10.55623 -9.88568 -9.84499 -9.54385 -8.70776 -6.41443 0.37750 0.45437 1.51879 1.58878 1.61766 1.80796 1.92227 2.57714 2.82994 3.14887 3.40656 3.52189 3.70599 3.81880 3.90106 3.93965 3.98784 4.03211 4.11991 4.19877 4.25233 4.43860 4.47369 4.51216 4.58521 4.62024 4.62616 4.66242 4.69239 4.72519 4.84691 4.87968 4.99171 5.00309 5.04412 5.08863 5.10103 5.14037 5.17661 5.29717 5.33257 5.46109 5.49282 5.51124 5.53539 5.56481 5.65049 5.98737 6.06911 6.17316 6.46215 6.54647 7.14117 7.43072 8.69552 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.002633 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.725198 B =10632.955000 C =11876.740039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.091 0.909 4 C -0.108 4.108 5 C 0.170 3.830 6 H 0.069 0.931 7 C -0.094 4.094 8 C -0.118 4.118 9 C -0.133 4.133 10 C -0.133 4.133 11 C -0.127 4.127 12 C -0.125 4.125 13 N -0.613 5.613 14 C 0.524 3.476 15 O -0.580 6.580 16 C -0.122 4.122 17 C -0.094 4.094 18 C -0.088 4.088 19 C 0.004 3.996 20 C -0.619 4.619 21 H 0.058 0.942 22 C -0.046 4.046 23 N -0.941 5.941 24 Si 1.122 2.878 25 H -0.265 1.265 26 H -0.265 1.265 27 H -0.285 1.285 28 C 0.092 3.908 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.060 0.940 44 H 0.061 0.939 45 H -0.019 1.019 46 H -0.020 1.020 47 H 0.252 0.748 48 H 0.082 0.918 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.285 4.287 -23.360 32.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.109 0.891 4 C -0.146 4.146 5 C 0.067 3.933 6 H 0.087 0.913 7 C -0.095 4.095 8 C -0.136 4.136 9 C -0.151 4.151 10 C -0.151 4.151 11 C -0.145 4.145 12 C -0.144 4.144 13 N -0.346 5.346 14 C 0.314 3.686 15 O -0.459 6.459 16 C -0.161 4.161 17 C -0.132 4.132 18 C -0.125 4.125 19 C -0.033 4.033 20 C -0.656 4.656 21 H 0.076 0.924 22 C -0.242 4.242 23 N -0.579 5.579 24 Si 0.942 3.058 25 H -0.190 1.190 26 H -0.190 1.190 27 H -0.211 1.211 28 C -0.030 4.030 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.080 0.920 45 H -0.001 1.001 46 H -0.002 1.002 47 H 0.061 0.939 48 H 0.100 0.900 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.909 3.871 -22.119 30.683 hybrid contribution 0.142 -0.110 -1.634 1.644 sum -20.767 3.761 -23.753 31.775 Atomic orbital electron populations 1.21678 0.91990 1.02705 1.03083 1.22393 0.97379 0.99033 0.92649 0.89086 1.22772 0.92150 1.00720 0.98946 1.20589 0.99929 0.92489 0.80286 0.91314 1.20213 0.97563 0.95618 0.96121 1.21008 1.00434 0.92703 0.99493 1.21420 0.99121 0.97198 0.97377 1.21454 0.97441 0.99972 0.96186 1.21416 0.99907 0.92482 1.00707 1.21214 0.97959 0.98002 0.97176 1.48657 1.13064 1.66924 1.05989 1.20827 0.82400 0.75692 0.89662 1.90703 1.28129 1.48595 1.78459 1.21628 0.99724 1.05586 0.89199 1.21234 0.96771 1.00409 0.94761 1.21329 0.97370 1.00995 0.92846 1.19219 0.94707 0.93625 0.95771 1.22549 1.00906 1.49292 0.92888 0.92358 1.27644 0.92171 0.92625 1.11804 1.70916 1.26136 1.46546 1.14253 0.82901 0.76282 0.78075 0.68550 1.19028 1.18984 1.21059 1.22830 0.81515 0.99370 0.99256 0.92102 0.91368 0.91250 0.88311 0.89835 0.86423 0.84839 0.84234 0.84164 0.85298 0.86910 0.86589 0.93877 0.94116 0.92113 0.91987 1.00072 1.00167 0.93870 0.90010 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.31 71.98 0.67 -0.13 16 2 C -0.10 -0.88 3.65 -9.33 -0.03 -0.91 16 3 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.11 -1.25 5.93 31.78 0.19 -1.06 16 5 C 0.17 3.37 3.05 44.59 0.14 3.51 16 6 H 0.07 1.52 8.03 -2.38 -0.02 1.50 16 7 C -0.09 -2.17 4.08 -19.87 -0.08 -2.25 16 8 C -0.12 -2.75 9.14 22.27 0.20 -2.54 16 9 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 10 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 11 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 12 C -0.13 -2.79 9.68 22.27 0.22 -2.58 16 13 N -0.61 -13.12 2.31 -791.76 -1.83 -14.95 16 14 C 0.52 15.62 7.47 87.66 0.65 16.27 16 15 O -0.58 -23.17 15.82 -3.03 -0.05 -23.22 16 16 C -0.12 -3.29 4.70 29.85 0.14 -3.15 16 17 C -0.09 -3.56 4.50 30.59 0.14 -3.42 16 18 C -0.09 -3.73 5.15 30.60 0.16 -3.57 16 19 C 0.00 0.21 4.28 29.85 0.13 0.34 16 20 C -0.62 -36.86 9.11 25.60 0.23 -36.63 16 21 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 22 C -0.05 -2.79 5.46 84.66 0.46 -2.33 16 23 N -0.94 -61.69 13.65 21.45 0.29 -61.39 16 24 Si 1.12 51.44 29.90 68.60 2.05 53.49 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 28 C 0.09 1.18 6.16 86.93 0.54 1.72 16 29 H 0.06 0.36 8.07 -2.39 -0.02 0.34 16 30 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.96 7.71 -2.39 -0.02 0.94 16 34 H 0.12 2.54 7.68 -2.91 -0.02 2.52 16 35 H 0.13 2.40 8.06 -2.91 -0.02 2.37 16 36 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.13 2.46 8.05 -2.91 -0.02 2.44 16 39 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.12 2.54 7.85 -2.39 -0.02 2.52 16 41 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 42 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 43 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 45 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 46 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 47 H 0.25 16.94 7.22 -92.70 -0.67 16.28 16 48 H 0.08 0.91 7.99 -2.39 -0.02 0.89 16 49 H 0.09 1.01 7.48 -2.38 -0.02 0.99 16 Total: -1.00 -80.44 396.04 5.87 -74.56 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.99 Total: 15.81 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 4.42 Total: -44.31 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -1.54 Total: -76.34 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.49 kcal Total: -80.44 5.87 -74.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807702655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.183 kcal (2) G-P(sol) polarization free energy of solvation -80.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds