Wall clock time and date at job start Tue Mar 31 2020 11:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47049 * 2 1 4 4 N 1.46901 * 109.47066 * 240.00410 * 2 1 3 5 5 C 1.46901 * 111.00345 * 84.99738 * 4 2 1 6 6 C 1.52998 * 109.47344 * 180.02562 * 5 4 2 7 7 H 1.08993 * 115.54746 * 29.41700 * 6 5 4 8 8 C 1.52998 * 117.49766 * 243.74767 * 6 5 4 9 9 C 1.52996 * 117.49752 * 175.09214 * 6 5 4 10 10 H 1.09005 * 117.50517 * 359.97438 * 9 6 5 11 11 C 1.53012 * 117.49518 * 215.00275 * 9 6 5 12 12 C 1.53780 * 113.61423 * 159.13670 * 11 9 6 13 13 C 1.53952 * 87.01636 * 220.04733 * 12 11 9 14 14 C 1.53779 * 113.61314 * 61.52383 * 11 9 6 15 15 C 1.50692 * 109.47358 * 120.00059 * 2 1 3 16 16 C 1.38299 * 119.93076 * 79.72592 * 15 2 1 17 17 C 1.38096 * 120.07056 * 179.72595 * 16 15 2 18 18 C 1.38879 * 119.92945 * 0.52706 * 17 16 15 19 19 O 1.35754 * 120.06693 * 179.72690 * 18 17 16 20 20 C 1.34838 * 116.99594 * 174.48889 * 19 18 17 21 21 H 1.08002 * 119.99760 * 5.05227 * 20 19 18 22 22 C 1.38653 * 119.99653 * 185.05294 * 20 19 18 23 23 N 1.31560 * 120.00396 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99784 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46996 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46676 * 120.00490 * 24 22 20 27 27 H 1.48494 * 109.47275 * 240.00342 * 24 22 20 28 28 C 1.38881 * 119.86179 * 359.74566 * 18 17 16 29 29 C 1.38096 * 119.92903 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47111 * 299.99821 * 1 2 3 32 32 H 1.09005 * 109.47509 * 59.99560 * 1 2 3 33 33 H 1.00903 * 110.99801 * 208.94980 * 4 2 1 34 34 H 1.09003 * 109.46901 * 300.00227 * 5 4 2 35 35 H 1.09007 * 109.47087 * 59.99772 * 5 4 2 36 36 H 1.09001 * 117.50042 * 359.97438 * 8 6 5 37 37 H 1.09004 * 117.50280 * 145.01838 * 8 6 5 38 38 H 1.09002 * 112.84677 * 290.33013 * 11 9 6 39 39 H 1.09000 * 113.61332 * 334.56118 * 12 11 9 40 40 H 1.08996 * 113.61542 * 105.46531 * 12 11 9 41 41 H 1.09003 * 113.53976 * 270.80762 * 13 12 11 42 42 H 1.09007 * 113.66691 * 139.93530 * 13 12 11 43 43 H 1.08994 * 113.61621 * 254.52624 * 14 11 9 44 44 H 1.08997 * 113.61540 * 25.43861 * 14 11 9 45 45 H 1.08003 * 119.96240 * 359.97438 * 16 15 2 46 46 H 1.08002 * 120.03682 * 180.27370 * 17 16 15 47 47 H 0.96992 * 120.00060 * 179.97438 * 23 22 20 48 48 H 1.07998 * 120.03023 * 179.97438 * 28 18 17 49 49 H 1.08002 * 119.96178 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3470 6 6 2.5950 -0.5330 -3.5746 7 1 2.3614 -1.5973 -3.6028 8 6 3.9311 -0.0869 -4.1718 9 6 2.6236 0.2196 -4.9063 10 1 2.2769 1.2531 -4.9080 11 6 2.3221 -0.5794 -6.1759 12 6 1.8755 0.2928 -7.3611 13 6 0.8525 -0.8114 -7.6842 14 6 0.9130 -1.1950 -6.1962 15 6 2.0324 -0.7104 1.2304 16 6 2.0609 -2.0926 1.2658 17 6 2.5260 -2.7465 2.3897 18 6 2.9551 -2.0147 3.4893 19 8 3.4077 -2.6548 4.5977 20 6 3.9150 -1.8873 5.5834 21 1 3.8734 -0.8109 5.5053 22 6 4.4902 -2.4800 6.6971 23 7 4.5413 -3.7912 6.7919 24 14 5.1937 -1.4167 8.0624 25 1 5.0135 0.0161 7.7166 26 1 4.4857 -1.7116 9.3340 27 1 6.6407 -1.7096 8.2221 28 6 2.9200 -0.6269 3.4527 29 6 2.4582 0.0212 2.3241 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.9173 -1.1204 -1.0288 34 1 1.0870 0.6164 -2.5525 35 1 2.7588 1.0464 -2.1183 36 1 4.4447 0.7453 -3.6903 37 1 4.5764 -0.8576 -4.5933 38 1 3.1116 -1.2874 -6.4279 39 1 1.4194 1.2363 -7.0615 40 1 2.6424 0.4162 -8.1258 41 1 1.2400 -1.5825 -8.3501 42 1 -0.1192 -0.4295 -7.9976 43 1 0.9040 -2.2709 -6.0220 44 1 0.1934 -0.6589 -5.5776 45 1 1.7228 -2.6612 0.4121 46 1 2.5521 -3.8259 2.4151 47 1 4.9440 -4.2057 7.5708 48 1 3.2526 -0.0551 4.3064 49 1 2.4302 1.1005 2.2952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818346318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:23 Heat of formation + Delta-G solvation = 29.086358 kcal Electronic energy + Delta-G solvation = -24993.622154 eV Core-core repulsion = 21501.108286 eV Total energy + Delta-G solvation = -3492.513868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.71709 -39.17856 -37.69443 -36.66075 -34.94185 -32.29291 -30.80577 -30.13162 -27.92694 -26.75466 -25.87472 -25.46335 -25.12530 -22.30245 -21.88644 -21.30641 -20.60576 -19.85641 -19.59838 -17.92664 -17.04011 -16.30816 -15.90395 -15.46494 -15.15680 -14.66633 -14.52191 -14.08371 -14.00750 -13.66154 -13.44282 -13.40169 -13.05944 -12.77282 -12.72992 -12.72173 -12.50891 -12.31409 -12.01974 -11.88234 -11.67246 -11.45856 -11.33649 -11.19600 -10.95384 -10.88365 -10.73994 -10.67086 -10.62012 -10.42333 -10.32253 -9.89922 -9.78729 -9.33034 -8.83250 -8.34635 -8.16168 -7.17205 -6.45384 -4.04229 2.23372 2.30993 3.11589 3.13108 3.18635 3.49112 3.96208 4.06076 4.35497 4.41032 4.42275 4.56936 4.61960 4.80656 4.81167 4.98002 5.08841 5.11869 5.21066 5.26718 5.33095 5.39699 5.44916 5.48404 5.50433 5.54292 5.60351 5.64257 5.67782 5.70508 5.71921 5.75596 5.89169 5.91734 5.96589 6.02221 6.04107 6.16262 6.24367 6.24881 6.40801 6.48637 6.74102 6.88336 7.05231 7.08334 7.27909 7.43494 7.44871 7.57313 7.84141 7.99896 9.00422 9.71010 10.72737 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.029436 B = 0.001956 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.996089 B =14311.172981 C =14394.816343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.143 3.857 3 H 0.039 0.961 4 N -0.682 5.682 5 C 0.090 3.910 6 C -0.138 4.138 7 H 0.112 0.888 8 C -0.180 4.180 9 C -0.138 4.138 10 H 0.101 0.899 11 C -0.080 4.080 12 C -0.135 4.135 13 C -0.146 4.146 14 C -0.132 4.132 15 C -0.192 4.192 16 C -0.055 4.055 17 C -0.195 4.195 18 C 0.155 3.845 19 O -0.178 6.178 20 C -0.391 4.391 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.235 4.235 29 C -0.066 4.066 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.346 0.654 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.269 0.731 48 H 0.126 0.874 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 8.670 -23.623 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.034 3.966 3 H 0.057 0.943 4 N -0.314 5.314 5 C -0.039 4.039 6 C -0.156 4.156 7 H 0.130 0.870 8 C -0.217 4.217 9 C -0.156 4.156 10 H 0.119 0.881 11 C -0.098 4.098 12 C -0.172 4.172 13 C -0.183 4.183 14 C -0.170 4.170 15 C -0.193 4.193 16 C -0.073 4.073 17 C -0.214 4.214 18 C 0.101 3.899 19 O -0.082 6.082 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.497 5.497 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.254 4.254 29 C -0.085 4.085 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.165 0.835 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.079 0.921 48 H 0.144 0.856 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.656 8.013 -23.544 25.505 hybrid contribution 1.211 1.158 1.017 1.960 sum -4.445 9.170 -22.527 24.725 Atomic orbital electron populations 1.21770 0.94609 1.02280 1.00305 1.20130 0.95098 0.94419 0.86995 0.94301 1.60580 1.33744 1.32802 1.04226 1.21533 0.99942 0.93072 0.89387 1.22372 1.00002 1.00420 0.92822 0.86967 1.23216 0.90793 1.03347 1.04366 1.22369 1.01668 0.99478 0.92123 0.88055 1.22123 0.97183 0.97347 0.93159 1.22980 0.98734 0.97647 0.97836 1.22864 0.99545 0.98858 0.97071 1.22898 0.96983 1.00858 0.96222 1.19263 1.10160 0.93818 0.96086 1.20493 0.96948 0.93368 0.96522 1.20259 1.08781 0.99430 0.92958 1.19428 0.91952 0.90919 0.87573 1.83985 1.67294 1.35083 1.21813 1.21372 1.37911 0.90716 0.96776 0.89056 1.25290 0.96769 0.96320 0.98178 1.70046 1.41671 1.08711 1.29305 0.85652 0.78699 0.79249 0.79850 1.19138 1.20139 1.20144 1.21116 1.09828 0.94437 1.00021 1.20583 0.96984 0.98093 0.92795 0.91974 0.92739 0.93597 0.83489 0.91014 0.95510 0.89112 0.88943 0.89400 0.90153 0.91717 0.90407 0.91584 0.91589 0.89873 0.86271 0.86579 0.92077 0.85648 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.39 37.16 0.35 -1.32 16 2 C 0.14 1.94 2.81 -68.87 -0.19 1.74 16 3 H 0.04 0.52 7.66 -51.93 -0.40 0.12 16 4 N -0.68 -8.36 5.70 -107.95 -0.62 -8.98 16 5 C 0.09 0.93 5.76 -3.82 -0.02 0.91 16 6 C -0.14 -1.28 5.50 -90.62 -0.50 -1.77 16 7 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 8 C -0.18 -1.55 9.87 -26.70 -0.26 -1.81 16 9 C -0.14 -1.11 5.25 -90.58 -0.48 -1.59 16 10 H 0.10 0.81 7.97 -51.93 -0.41 0.39 16 11 C -0.08 -0.59 3.87 -89.80 -0.35 -0.94 16 12 C -0.13 -0.88 7.65 -25.83 -0.20 -1.08 16 13 C -0.15 -0.94 8.09 -25.83 -0.21 -1.15 16 14 C -0.13 -0.97 7.49 -25.92 -0.19 -1.16 16 15 C -0.19 -3.22 4.71 -104.58 -0.49 -3.72 16 16 C -0.05 -0.97 9.00 -39.61 -0.36 -1.33 16 17 C -0.19 -4.13 9.99 -39.40 -0.39 -4.52 16 18 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 19 O -0.18 -5.12 9.76 0.01 0.00 -5.12 16 20 C -0.39 -10.98 9.49 30.89 0.29 -10.68 16 21 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 24 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 28 C -0.23 -5.10 9.17 -39.40 -0.36 -5.47 16 29 C -0.07 -1.20 9.66 -39.61 -0.38 -1.59 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 33 H 0.35 4.48 8.00 -39.29 -0.31 4.17 16 34 H 0.07 0.74 7.44 -51.93 -0.39 0.35 16 35 H 0.03 0.28 7.79 -51.92 -0.40 -0.12 16 36 H 0.09 0.78 8.03 -51.93 -0.42 0.37 16 37 H 0.09 0.76 8.13 -51.93 -0.42 0.34 16 38 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 39 H 0.08 0.51 7.98 -51.93 -0.41 0.10 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 45 H 0.12 1.89 7.72 -52.48 -0.41 1.48 16 46 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 47 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 49 H 0.10 1.63 8.03 -52.49 -0.42 1.21 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -29.19 396.43 -11.32 -40.51 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.31 Total: 7.66 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: -4.10 Total: -31.00 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.14 Total: -33.58 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.19 -11.32 -40.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818346318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.598 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds