Wall clock time and date at job start Tue Mar 31 2020 11:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47049 * 2 1 4 4 N 1.46901 * 109.47066 * 240.00410 * 2 1 3 5 5 C 1.46901 * 111.00345 * 84.99738 * 4 2 1 6 6 C 1.52998 * 109.47344 * 180.02562 * 5 4 2 7 7 H 1.08993 * 115.54746 * 29.41700 * 6 5 4 8 8 C 1.52998 * 117.49766 * 243.74767 * 6 5 4 9 9 C 1.52996 * 117.49752 * 175.09214 * 6 5 4 10 10 H 1.09005 * 117.50517 * 359.97438 * 9 6 5 11 11 C 1.53012 * 117.49518 * 215.00275 * 9 6 5 12 12 C 1.53780 * 113.61423 * 159.13670 * 11 9 6 13 13 C 1.53952 * 87.01636 * 220.04733 * 12 11 9 14 14 C 1.53779 * 113.61314 * 61.52383 * 11 9 6 15 15 C 1.50692 * 109.47358 * 120.00059 * 2 1 3 16 16 C 1.38299 * 119.93076 * 79.72592 * 15 2 1 17 17 C 1.38096 * 120.07056 * 179.72595 * 16 15 2 18 18 C 1.38879 * 119.92945 * 0.52706 * 17 16 15 19 19 O 1.35754 * 120.06693 * 179.72690 * 18 17 16 20 20 C 1.34838 * 116.99594 * 174.48889 * 19 18 17 21 21 H 1.08002 * 119.99760 * 5.05227 * 20 19 18 22 22 C 1.38653 * 119.99653 * 185.05294 * 20 19 18 23 23 N 1.31560 * 120.00396 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99784 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46996 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46676 * 120.00490 * 24 22 20 27 27 H 1.48494 * 109.47275 * 240.00342 * 24 22 20 28 28 C 1.38881 * 119.86179 * 359.74566 * 18 17 16 29 29 C 1.38096 * 119.92903 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47111 * 299.99821 * 1 2 3 32 32 H 1.09005 * 109.47509 * 59.99560 * 1 2 3 33 33 H 1.00903 * 110.99801 * 208.94980 * 4 2 1 34 34 H 1.09003 * 109.46901 * 300.00227 * 5 4 2 35 35 H 1.09007 * 109.47087 * 59.99772 * 5 4 2 36 36 H 1.09001 * 117.50042 * 359.97438 * 8 6 5 37 37 H 1.09004 * 117.50280 * 145.01838 * 8 6 5 38 38 H 1.09002 * 112.84677 * 290.33013 * 11 9 6 39 39 H 1.09000 * 113.61332 * 334.56118 * 12 11 9 40 40 H 1.08996 * 113.61542 * 105.46531 * 12 11 9 41 41 H 1.09003 * 113.53976 * 270.80762 * 13 12 11 42 42 H 1.09007 * 113.66691 * 139.93530 * 13 12 11 43 43 H 1.08994 * 113.61621 * 254.52624 * 14 11 9 44 44 H 1.08997 * 113.61540 * 25.43861 * 14 11 9 45 45 H 1.08003 * 119.96240 * 359.97438 * 16 15 2 46 46 H 1.08002 * 120.03682 * 180.27370 * 17 16 15 47 47 H 0.96992 * 120.00060 * 179.97438 * 23 22 20 48 48 H 1.07998 * 120.03023 * 179.97438 * 28 18 17 49 49 H 1.08002 * 119.96178 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3470 6 6 2.5950 -0.5330 -3.5746 7 1 2.3614 -1.5973 -3.6028 8 6 3.9311 -0.0869 -4.1718 9 6 2.6236 0.2196 -4.9063 10 1 2.2769 1.2531 -4.9080 11 6 2.3221 -0.5794 -6.1759 12 6 1.8755 0.2928 -7.3611 13 6 0.8525 -0.8114 -7.6842 14 6 0.9130 -1.1950 -6.1962 15 6 2.0324 -0.7104 1.2304 16 6 2.0609 -2.0926 1.2658 17 6 2.5260 -2.7465 2.3897 18 6 2.9551 -2.0147 3.4893 19 8 3.4077 -2.6548 4.5977 20 6 3.9150 -1.8873 5.5834 21 1 3.8734 -0.8109 5.5053 22 6 4.4902 -2.4800 6.6971 23 7 4.5413 -3.7912 6.7919 24 14 5.1937 -1.4167 8.0624 25 1 5.0135 0.0161 7.7166 26 1 4.4857 -1.7116 9.3340 27 1 6.6407 -1.7096 8.2221 28 6 2.9200 -0.6269 3.4527 29 6 2.4582 0.0212 2.3241 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.9173 -1.1204 -1.0288 34 1 1.0870 0.6164 -2.5525 35 1 2.7588 1.0464 -2.1183 36 1 4.4447 0.7453 -3.6903 37 1 4.5764 -0.8576 -4.5933 38 1 3.1116 -1.2874 -6.4279 39 1 1.4194 1.2363 -7.0615 40 1 2.6424 0.4162 -8.1258 41 1 1.2400 -1.5825 -8.3501 42 1 -0.1192 -0.4295 -7.9976 43 1 0.9040 -2.2709 -6.0220 44 1 0.1934 -0.6589 -5.5776 45 1 1.7228 -2.6612 0.4121 46 1 2.5521 -3.8259 2.4151 47 1 4.9440 -4.2057 7.5708 48 1 3.2526 -0.0551 4.3064 49 1 2.4302 1.1005 2.2952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818346318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:21 Heat of formation + Delta-G solvation = 14.931027 kcal Electronic energy + Delta-G solvation = -24994.235975 eV Core-core repulsion = 21501.108286 eV Total energy + Delta-G solvation = -3493.127689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.89524 -40.28836 -39.06364 -37.68409 -36.12526 -34.26337 -32.05228 -31.68445 -29.36824 -27.50143 -27.33163 -26.40757 -25.99854 -23.82944 -23.34269 -22.01003 -21.50301 -21.07466 -20.20085 -19.75622 -18.83386 -17.34279 -16.72795 -16.47145 -16.31694 -16.13836 -15.71413 -15.56117 -15.36310 -15.31110 -14.61107 -14.42640 -14.27908 -14.04092 -13.81222 -13.67278 -13.51028 -13.30657 -13.25563 -13.02599 -12.89661 -12.66667 -12.52236 -12.38219 -12.20685 -12.11128 -12.05235 -11.68418 -11.49614 -11.43851 -11.26603 -11.17780 -10.79880 -10.53971 -10.47046 -9.77596 -9.32264 -8.91309 -8.47594 -6.15768 0.60120 0.68240 1.34465 1.42783 1.52810 2.17087 2.77887 2.83151 3.13774 3.24859 3.52165 3.71496 3.81290 3.82983 3.89988 4.02953 4.10375 4.16172 4.20323 4.22640 4.31159 4.41669 4.48672 4.57012 4.60907 4.63363 4.74366 4.75809 4.90291 4.91343 4.94582 4.95896 4.97928 4.98879 5.01755 5.12875 5.13222 5.15844 5.16858 5.28983 5.30979 5.40607 5.45219 5.47825 5.58163 5.68590 5.71295 5.74038 6.02820 6.20249 6.26678 6.49298 6.97211 7.78502 8.75889 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.029436 B = 0.001956 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.996089 B =14311.172981 C =14394.816343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.146 3.854 3 H 0.052 0.948 4 N -0.684 5.684 5 C 0.094 3.906 6 C -0.143 4.143 7 H 0.103 0.897 8 C -0.182 4.182 9 C -0.127 4.127 10 H 0.106 0.894 11 C -0.083 4.083 12 C -0.132 4.132 13 C -0.144 4.144 14 C -0.134 4.134 15 C -0.164 4.164 16 C -0.045 4.045 17 C -0.205 4.205 18 C 0.114 3.886 19 O -0.233 6.233 20 C -0.413 4.413 21 H 0.101 0.899 22 C -0.024 4.024 23 N -0.921 5.921 24 Si 1.019 2.981 25 H -0.251 1.251 26 H -0.268 1.268 27 H -0.268 1.268 28 C -0.242 4.242 29 C -0.064 4.064 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.342 0.658 34 H 0.077 0.923 35 H 0.029 0.971 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.145 0.855 46 H 0.111 0.889 47 H 0.272 0.728 48 H 0.118 0.882 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 11.347 -25.916 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.037 3.963 3 H 0.070 0.930 4 N -0.315 5.315 5 C -0.034 4.034 6 C -0.161 4.161 7 H 0.121 0.879 8 C -0.219 4.219 9 C -0.145 4.145 10 H 0.124 0.876 11 C -0.101 4.101 12 C -0.169 4.169 13 C -0.181 4.181 14 C -0.172 4.172 15 C -0.165 4.165 16 C -0.063 4.063 17 C -0.225 4.225 18 C 0.064 3.936 19 O -0.140 6.140 20 C -0.489 4.489 21 H 0.119 0.881 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.838 3.162 25 H -0.175 1.175 26 H -0.193 1.193 27 H -0.193 1.193 28 C -0.261 4.261 29 C -0.083 4.083 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.163 0.837 46 H 0.129 0.871 47 H 0.081 0.919 48 H 0.136 0.864 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.372 10.719 -25.899 28.745 hybrid contribution 1.281 0.399 1.364 1.913 sum -5.091 11.118 -24.534 27.413 Atomic orbital electron populations 1.21744 0.93455 1.02106 1.01422 1.20153 0.95859 0.94555 0.85741 0.92985 1.60596 1.33571 1.33219 1.04133 1.21535 1.00371 0.92748 0.88792 1.22245 1.00749 0.99942 0.93193 0.87912 1.23253 0.90825 1.03405 1.04413 1.22400 1.00875 0.99549 0.91693 0.87553 1.22150 0.97143 0.97543 0.93255 1.22978 0.98815 0.97658 0.97472 1.22871 0.99844 0.98918 0.96481 1.22894 0.96854 1.00518 0.96929 1.19743 1.06441 0.93491 0.96797 1.20754 0.95556 0.94144 0.95835 1.20486 1.09056 0.99525 0.93401 1.19954 0.93548 0.92455 0.87680 1.83949 1.69998 1.36538 1.23505 1.21858 1.38321 0.91377 0.97335 0.88123 1.26598 0.96929 0.97836 1.00776 1.70191 1.44054 1.10972 1.30690 0.84523 0.77881 0.77785 0.75966 1.17478 1.19321 1.19347 1.21213 1.10253 0.93495 1.01186 1.20937 0.95722 0.99919 0.91686 0.92814 0.92646 0.91581 0.83916 0.90457 0.95288 0.89028 0.88799 0.89583 0.89811 0.91249 0.89990 0.91113 0.92051 0.90225 0.83713 0.87083 0.91854 0.86434 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.39 71.98 0.68 -2.11 16 2 C 0.15 3.41 2.81 44.17 0.12 3.54 16 3 H 0.05 1.14 7.66 -2.39 -0.02 1.12 16 4 N -0.68 -14.57 5.70 -495.45 -2.82 -17.39 16 5 C 0.09 1.65 5.76 86.30 0.50 2.15 16 6 C -0.14 -2.32 5.50 -10.80 -0.06 -2.38 16 7 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 8 C -0.18 -2.75 9.87 30.62 0.30 -2.45 16 9 C -0.13 -1.74 5.25 -10.77 -0.06 -1.80 16 10 H 0.11 1.39 7.97 -2.38 -0.02 1.37 16 11 C -0.08 -1.06 3.87 -10.26 -0.04 -1.09 16 12 C -0.13 -1.44 7.65 31.18 0.24 -1.20 16 13 C -0.14 -1.56 8.09 31.18 0.25 -1.31 16 14 C -0.13 -1.74 7.49 31.12 0.23 -1.50 16 15 C -0.16 -5.05 4.71 -19.84 -0.09 -5.15 16 16 C -0.04 -1.52 9.00 22.25 0.20 -1.32 16 17 C -0.21 -8.88 9.99 22.39 0.22 -8.65 16 18 C 0.11 5.73 6.65 22.58 0.15 5.88 16 19 O -0.23 -14.22 9.76 -22.87 -0.22 -14.44 16 20 C -0.41 -24.27 9.49 67.92 0.64 -23.62 16 21 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 22 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 23 N -0.92 -56.99 13.67 21.61 0.30 -56.69 16 24 Si 1.02 43.15 29.55 68.60 2.03 45.17 16 25 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 27 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 28 C -0.24 -10.60 9.17 22.39 0.21 -10.39 16 29 C -0.06 -2.20 9.66 22.25 0.21 -1.99 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.19 7.45 -2.38 -0.02 1.17 16 33 H 0.34 7.89 8.00 -89.69 -0.72 7.17 16 34 H 0.08 1.29 7.44 -2.39 -0.02 1.27 16 35 H 0.03 0.51 7.79 -2.38 -0.02 0.49 16 36 H 0.09 1.38 8.03 -2.39 -0.02 1.36 16 37 H 0.09 1.39 8.13 -2.38 -0.02 1.37 16 38 H 0.09 1.14 8.07 -2.39 -0.02 1.12 16 39 H 0.08 0.86 7.98 -2.39 -0.02 0.84 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 1.08 8.10 -2.39 -0.02 1.06 16 45 H 0.15 4.21 7.72 -2.91 -0.02 4.19 16 46 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 47 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 48 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 49 H 0.14 3.81 8.03 -2.91 -0.02 3.78 16 Total: -1.00 -67.15 396.43 3.66 -63.48 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: 0.21 Total: 34.17 kcal Atomic # 6 Polarization: -58.48 SS G_CDS: 4.18 Total: -54.30 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -2.53 Total: -74.08 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.22 Total: -14.44 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -67.15 3.66 -63.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818346318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.412 kcal (2) G-P(sol) polarization free energy of solvation -67.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds