Wall clock time and date at job start Tue Mar 31 2020 11:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47605 * 2 1 4 4 N 1.46902 * 109.47127 * 120.00086 * 2 1 3 5 5 C 1.46900 * 110.99841 * 274.99922 * 4 2 1 6 6 C 1.53005 * 109.46956 * 179.97438 * 5 4 2 7 7 H 1.09001 * 115.54743 * 29.41933 * 6 5 4 8 8 C 1.52995 * 117.49922 * 243.74577 * 6 5 4 9 9 C 1.53002 * 117.49934 * 175.08626 * 6 5 4 10 10 H 1.09007 * 117.49241 * 359.97234 * 9 6 5 11 11 C 1.52994 * 117.49793 * 214.98048 * 9 6 5 12 12 C 1.53785 * 113.61451 * 159.13408 * 11 9 6 13 13 C 1.53951 * 87.02443 * 220.04734 * 12 11 9 14 14 C 1.53788 * 87.11026 * 25.36364 * 13 12 11 15 15 C 1.50706 * 109.47012 * 239.99830 * 2 1 3 16 16 C 1.38298 * 119.93128 * 279.72566 * 15 2 1 17 17 C 1.38100 * 120.06995 * 179.71986 * 16 15 2 18 18 C 1.38880 * 119.92795 * 0.57925 * 17 16 15 19 19 O 1.35750 * 120.07016 * 179.67583 * 18 17 16 20 20 C 1.34832 * 116.99852 * 174.48443 * 19 18 17 21 21 H 1.07999 * 120.00378 * 5.06267 * 20 19 18 22 22 C 1.38656 * 119.99792 * 185.05814 * 20 19 18 23 23 N 1.31561 * 120.00102 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00078 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47027 * 90.00226 * 24 22 20 26 26 H 1.48492 * 109.46997 * 210.00177 * 24 22 20 27 27 H 1.48502 * 109.46764 * 330.00386 * 24 22 20 28 28 C 1.38882 * 119.86231 * 359.69794 * 18 17 16 29 29 C 1.38098 * 119.92807 * 0.02562 * 28 18 17 30 30 H 1.09004 * 109.47140 * 299.99859 * 1 2 3 31 31 H 1.08999 * 109.47419 * 60.00041 * 1 2 3 32 32 H 1.09004 * 109.47601 * 180.02562 * 1 2 3 33 33 H 1.00902 * 110.99977 * 151.04395 * 4 2 1 34 34 H 1.09005 * 109.47124 * 299.99534 * 5 4 2 35 35 H 1.09000 * 109.47169 * 60.00322 * 5 4 2 36 36 H 1.09002 * 117.49764 * 359.97438 * 8 6 5 37 37 H 1.08998 * 117.49975 * 145.02298 * 8 6 5 38 38 H 1.08997 * 112.85051 * 290.33174 * 11 9 6 39 39 H 1.09002 * 113.61508 * 334.57254 * 12 11 9 40 40 H 1.09007 * 113.61411 * 105.46602 * 12 11 9 41 41 H 1.08997 * 113.53466 * 270.81902 * 13 12 11 42 42 H 1.08997 * 113.66851 * 139.92715 * 13 12 11 43 43 H 1.08998 * 113.61565 * 220.09478 * 14 13 12 44 44 H 1.08999 * 113.61622 * 89.18306 * 14 13 12 45 45 H 1.08006 * 119.96572 * 359.97438 * 16 15 2 46 46 H 1.08001 * 120.03572 * 180.27296 * 17 16 15 47 47 H 0.96993 * 120.00021 * 180.02562 * 23 22 20 48 48 H 1.08001 * 120.03719 * 180.02562 * 28 18 17 49 49 H 1.08006 * 119.96431 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5332 3.5745 7 1 3.2689 -1.3645 3.3672 8 6 1.6445 -0.6742 4.7650 9 6 2.8420 0.2754 4.8497 10 1 2.6398 1.3459 4.8138 11 6 4.0156 -0.1452 5.7365 12 6 4.5051 0.9671 6.6790 13 6 5.9357 0.4924 6.3658 14 6 5.3819 -0.0487 5.0371 15 6 2.0323 -0.7105 -1.2305 16 6 2.0714 -2.0926 -1.2617 17 6 2.5257 -2.7466 -2.3899 18 6 2.9549 -2.0148 -3.4895 19 8 3.4083 -2.6548 -4.5975 20 6 3.7013 -1.8904 -5.6689 21 1 3.6502 -0.8142 -5.5948 22 6 4.0683 -2.4862 -6.8659 23 7 4.1302 -3.7973 -6.9565 24 14 4.4750 -1.4273 -8.3502 25 1 5.9259 -1.1107 -8.3497 26 1 4.1295 -2.1632 -9.5928 27 1 3.6931 -0.1664 -8.2878 28 6 2.9198 -0.6269 -3.4529 29 6 2.4590 0.0211 -2.3238 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.9172 -1.1206 1.0287 34 1 2.7589 1.0462 2.1182 35 1 1.0870 0.6163 2.5525 36 1 0.6541 -0.2282 4.6739 37 1 1.6932 -1.5981 5.3413 38 1 3.8476 -1.0989 6.2369 39 1 4.2895 1.9724 6.3170 40 1 4.2125 0.8187 7.7185 41 1 6.2931 -0.2865 7.0394 42 1 6.6496 1.3067 6.2419 43 1 5.7961 -1.0161 4.7531 44 1 5.4064 0.6783 4.2254 45 1 1.7424 -2.6610 -0.4043 46 1 2.5519 -3.8260 -2.4153 47 1 4.3873 -4.2140 -7.7937 48 1 3.2525 -0.0551 -4.3065 49 1 2.4318 1.1004 -2.2946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818346319.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:28 Heat of formation + Delta-G solvation = 29.479752 kcal Electronic energy + Delta-G solvation = -25036.862972 eV Core-core repulsion = 21544.366163 eV Total energy + Delta-G solvation = -3492.496809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.71266 -39.17872 -37.69103 -36.65247 -34.94826 -32.29267 -30.82151 -30.13125 -27.93131 -26.76951 -25.87702 -25.44044 -25.08214 -22.30724 -21.89243 -21.31040 -20.67000 -19.85393 -19.59529 -17.92637 -17.01601 -16.11977 -15.92374 -15.65807 -15.08169 -14.61460 -14.52776 -14.15700 -14.00625 -13.69307 -13.64554 -13.36107 -12.88605 -12.77489 -12.72846 -12.70288 -12.48070 -12.29821 -12.05747 -11.79914 -11.66280 -11.50239 -11.30473 -11.20593 -10.99198 -10.90608 -10.72922 -10.67655 -10.62859 -10.42886 -10.29600 -9.90130 -9.81365 -9.33161 -8.82784 -8.31791 -8.16125 -7.17193 -6.45127 -4.04015 2.23367 2.31074 3.12139 3.13197 3.18002 3.49278 3.96422 4.08914 4.36544 4.40744 4.43812 4.56848 4.60144 4.79210 4.84088 4.97191 5.07437 5.12953 5.21702 5.28202 5.34350 5.40331 5.45628 5.48462 5.49801 5.54730 5.60383 5.61543 5.68110 5.70619 5.70974 5.73570 5.89299 5.92287 5.97249 6.02572 6.04270 6.15324 6.24445 6.24481 6.41079 6.48841 6.74170 6.88261 7.04983 7.07972 7.27628 7.43488 7.44745 7.56664 7.84162 7.99978 9.00515 9.71073 10.72892 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002115 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.476115 B =13233.361092 C =13874.094527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.143 3.857 3 H 0.039 0.961 4 N -0.681 5.681 5 C 0.090 3.910 6 C -0.136 4.136 7 H 0.106 0.894 8 C -0.170 4.170 9 C -0.143 4.143 10 H 0.101 0.899 11 C -0.080 4.080 12 C -0.134 4.134 13 C -0.146 4.146 14 C -0.134 4.134 15 C -0.192 4.192 16 C -0.055 4.055 17 C -0.195 4.195 18 C 0.155 3.845 19 O -0.178 6.178 20 C -0.392 4.392 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.268 1.268 28 C -0.235 4.235 29 C -0.066 4.066 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.345 0.655 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.270 0.730 48 H 0.126 0.874 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 9.405 23.130 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.034 3.966 3 H 0.057 0.943 4 N -0.313 5.313 5 C -0.040 4.040 6 C -0.154 4.154 7 H 0.124 0.876 8 C -0.207 4.207 9 C -0.161 4.161 10 H 0.119 0.881 11 C -0.098 4.098 12 C -0.172 4.172 13 C -0.183 4.183 14 C -0.171 4.171 15 C -0.193 4.193 16 C -0.074 4.074 17 C -0.214 4.214 18 C 0.101 3.899 19 O -0.081 6.081 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.254 4.254 29 C -0.084 4.084 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.164 0.836 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.080 0.920 48 H 0.143 0.857 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.355 8.742 23.050 24.764 hybrid contribution 0.953 1.114 -1.055 1.807 sum -1.401 9.857 21.995 24.143 Atomic orbital electron populations 1.21767 0.94619 1.02291 1.00275 1.20133 0.95118 0.94406 0.86982 0.94287 1.60578 1.33715 1.32843 1.04174 1.21540 0.99747 0.93164 0.89500 1.22290 1.02520 1.01665 0.88927 0.87617 1.23127 0.94677 1.00935 1.01922 1.22420 0.97099 0.97310 0.99309 0.88055 1.22122 0.92804 0.98788 0.96088 1.22980 0.96162 0.98639 0.99388 1.22859 0.96661 1.00842 0.97952 1.22913 0.95776 1.01543 0.96909 1.19263 1.10162 0.93818 0.96087 1.20499 0.97066 0.93372 0.96426 1.20259 1.08372 0.99410 0.93384 1.19428 0.91085 0.90929 0.88448 1.83981 1.70638 1.35313 1.18202 1.21317 1.47305 0.90737 0.87439 0.89117 1.25293 0.96826 0.96304 0.98140 1.70038 1.44124 1.08648 1.26930 0.85716 0.78978 0.79068 0.79689 1.19897 1.20246 1.19223 1.21115 1.09898 0.94422 0.99970 1.20582 0.96997 0.98091 0.92774 0.93655 0.92722 0.91964 0.83602 0.95273 0.91198 0.89002 0.89071 0.89370 0.90160 0.91693 0.90367 0.91557 0.91572 0.89969 0.86259 0.86584 0.92027 0.85654 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.39 37.15 0.35 -1.33 16 2 C 0.14 1.94 2.82 -68.86 -0.19 1.74 16 3 H 0.04 0.52 7.66 -51.93 -0.40 0.12 16 4 N -0.68 -8.35 5.68 -107.95 -0.61 -8.96 16 5 C 0.09 0.93 5.77 -3.82 -0.02 0.91 16 6 C -0.14 -1.25 5.50 -90.62 -0.50 -1.75 16 7 H 0.11 1.05 8.13 -51.93 -0.42 0.63 16 8 C -0.17 -1.43 9.87 -26.70 -0.26 -1.69 16 9 C -0.14 -1.15 5.25 -90.59 -0.48 -1.62 16 10 H 0.10 0.81 7.97 -51.93 -0.41 0.39 16 11 C -0.08 -0.60 3.87 -89.80 -0.35 -0.94 16 12 C -0.13 -0.90 7.65 -25.83 -0.20 -1.10 16 13 C -0.15 -0.98 8.09 -25.83 -0.21 -1.19 16 14 C -0.13 -1.03 7.49 -25.91 -0.19 -1.22 16 15 C -0.19 -3.22 4.72 -104.58 -0.49 -3.72 16 16 C -0.06 -0.98 8.99 -39.61 -0.36 -1.34 16 17 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16 18 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 19 O -0.18 -5.10 9.76 0.04 0.00 -5.10 16 20 C -0.39 -10.98 9.49 30.89 0.29 -10.68 16 21 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 22 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 24 Si 0.94 20.56 29.55 -169.99 -5.02 15.53 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 C -0.23 -5.10 9.17 -39.39 -0.36 -5.46 16 29 C -0.07 -1.20 9.66 -39.61 -0.38 -1.58 16 30 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.34 4.40 7.97 -39.29 -0.31 4.08 16 34 H 0.03 0.31 8.06 -51.93 -0.42 -0.11 16 35 H 0.07 0.72 7.17 -51.93 -0.37 0.35 16 36 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 37 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 38 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 39 H 0.08 0.53 7.98 -51.93 -0.41 0.11 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.12 1.89 7.70 -52.48 -0.40 1.49 16 46 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 47 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 49 H 0.10 1.63 8.03 -52.48 -0.42 1.21 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -29.26 396.36 -11.31 -40.58 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.31 Total: 7.63 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -4.10 Total: -31.05 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.15 Total: -33.57 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.26 -11.31 -40.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818346319.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.055 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds