Wall clock time and date at job start Tue Mar 31 2020 11:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47605 * 2 1 4 4 N 1.46902 * 109.47127 * 120.00086 * 2 1 3 5 5 C 1.46900 * 110.99841 * 274.99922 * 4 2 1 6 6 C 1.53005 * 109.46956 * 179.97438 * 5 4 2 7 7 H 1.09001 * 115.54743 * 29.41933 * 6 5 4 8 8 C 1.52995 * 117.49922 * 243.74577 * 6 5 4 9 9 C 1.53002 * 117.49934 * 175.08626 * 6 5 4 10 10 H 1.09007 * 117.49241 * 359.97234 * 9 6 5 11 11 C 1.52994 * 117.49793 * 214.98048 * 9 6 5 12 12 C 1.53785 * 113.61451 * 159.13408 * 11 9 6 13 13 C 1.53951 * 87.02443 * 220.04734 * 12 11 9 14 14 C 1.53788 * 87.11026 * 25.36364 * 13 12 11 15 15 C 1.50706 * 109.47012 * 239.99830 * 2 1 3 16 16 C 1.38298 * 119.93128 * 279.72566 * 15 2 1 17 17 C 1.38100 * 120.06995 * 179.71986 * 16 15 2 18 18 C 1.38880 * 119.92795 * 0.57925 * 17 16 15 19 19 O 1.35750 * 120.07016 * 179.67583 * 18 17 16 20 20 C 1.34832 * 116.99852 * 174.48443 * 19 18 17 21 21 H 1.07999 * 120.00378 * 5.06267 * 20 19 18 22 22 C 1.38656 * 119.99792 * 185.05814 * 20 19 18 23 23 N 1.31561 * 120.00102 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00078 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47027 * 90.00226 * 24 22 20 26 26 H 1.48492 * 109.46997 * 210.00177 * 24 22 20 27 27 H 1.48502 * 109.46764 * 330.00386 * 24 22 20 28 28 C 1.38882 * 119.86231 * 359.69794 * 18 17 16 29 29 C 1.38098 * 119.92807 * 0.02562 * 28 18 17 30 30 H 1.09004 * 109.47140 * 299.99859 * 1 2 3 31 31 H 1.08999 * 109.47419 * 60.00041 * 1 2 3 32 32 H 1.09004 * 109.47601 * 180.02562 * 1 2 3 33 33 H 1.00902 * 110.99977 * 151.04395 * 4 2 1 34 34 H 1.09005 * 109.47124 * 299.99534 * 5 4 2 35 35 H 1.09000 * 109.47169 * 60.00322 * 5 4 2 36 36 H 1.09002 * 117.49764 * 359.97438 * 8 6 5 37 37 H 1.08998 * 117.49975 * 145.02298 * 8 6 5 38 38 H 1.08997 * 112.85051 * 290.33174 * 11 9 6 39 39 H 1.09002 * 113.61508 * 334.57254 * 12 11 9 40 40 H 1.09007 * 113.61411 * 105.46602 * 12 11 9 41 41 H 1.08997 * 113.53466 * 270.81902 * 13 12 11 42 42 H 1.08997 * 113.66851 * 139.92715 * 13 12 11 43 43 H 1.08998 * 113.61565 * 220.09478 * 14 13 12 44 44 H 1.08999 * 113.61622 * 89.18306 * 14 13 12 45 45 H 1.08006 * 119.96572 * 359.97438 * 16 15 2 46 46 H 1.08001 * 120.03572 * 180.27296 * 17 16 15 47 47 H 0.96993 * 120.00021 * 180.02562 * 23 22 20 48 48 H 1.08001 * 120.03719 * 180.02562 * 28 18 17 49 49 H 1.08006 * 119.96431 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5332 3.5745 7 1 3.2689 -1.3645 3.3672 8 6 1.6445 -0.6742 4.7650 9 6 2.8420 0.2754 4.8497 10 1 2.6398 1.3459 4.8138 11 6 4.0156 -0.1452 5.7365 12 6 4.5051 0.9671 6.6790 13 6 5.9357 0.4924 6.3658 14 6 5.3819 -0.0487 5.0371 15 6 2.0323 -0.7105 -1.2305 16 6 2.0714 -2.0926 -1.2617 17 6 2.5257 -2.7466 -2.3899 18 6 2.9549 -2.0148 -3.4895 19 8 3.4083 -2.6548 -4.5975 20 6 3.7013 -1.8904 -5.6689 21 1 3.6502 -0.8142 -5.5948 22 6 4.0683 -2.4862 -6.8659 23 7 4.1302 -3.7973 -6.9565 24 14 4.4750 -1.4273 -8.3502 25 1 5.9259 -1.1107 -8.3497 26 1 4.1295 -2.1632 -9.5928 27 1 3.6931 -0.1664 -8.2878 28 6 2.9198 -0.6269 -3.4529 29 6 2.4590 0.0211 -2.3238 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.9172 -1.1206 1.0287 34 1 2.7589 1.0462 2.1182 35 1 1.0870 0.6163 2.5525 36 1 0.6541 -0.2282 4.6739 37 1 1.6932 -1.5981 5.3413 38 1 3.8476 -1.0989 6.2369 39 1 4.2895 1.9724 6.3170 40 1 4.2125 0.8187 7.7185 41 1 6.2931 -0.2865 7.0394 42 1 6.6496 1.3067 6.2419 43 1 5.7961 -1.0161 4.7531 44 1 5.4064 0.6783 4.2254 45 1 1.7424 -2.6610 -0.4043 46 1 2.5519 -3.8260 -2.4153 47 1 4.3873 -4.2140 -7.7937 48 1 3.2525 -0.0551 -4.3065 49 1 2.4318 1.1004 -2.2946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818346319.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:26 Heat of formation + Delta-G solvation = 15.270083 kcal Electronic energy + Delta-G solvation = -25037.479149 eV Core-core repulsion = 21544.366163 eV Total energy + Delta-G solvation = -3493.112987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.89465 -40.29143 -39.06562 -37.67545 -36.12852 -34.26189 -32.06405 -31.68686 -29.37736 -27.51944 -27.33020 -26.43465 -25.93827 -23.83122 -23.34266 -22.02157 -21.54740 -21.08498 -20.21889 -19.75473 -18.82506 -17.15650 -16.85005 -16.42461 -16.28121 -16.24061 -15.72995 -15.52168 -15.44475 -15.23911 -14.62830 -14.51941 -14.34260 -14.05896 -13.87942 -13.51895 -13.40510 -13.28957 -13.27349 -13.04328 -12.90275 -12.60324 -12.56055 -12.40777 -12.21222 -12.12269 -12.05641 -11.71578 -11.46643 -11.46201 -11.29955 -11.18075 -10.78985 -10.55507 -10.48004 -9.77562 -9.28501 -8.91283 -8.47273 -6.15474 0.60136 0.68347 1.34511 1.43838 1.52171 2.17430 2.77047 2.83972 3.14993 3.28558 3.52532 3.70063 3.79234 3.83112 3.89431 4.01204 4.09998 4.15640 4.21118 4.23168 4.31070 4.40105 4.54084 4.57397 4.60754 4.63336 4.73842 4.75697 4.83131 4.89433 4.91479 4.94888 4.98311 5.01100 5.03220 5.10714 5.12983 5.13781 5.16090 5.29215 5.32814 5.39519 5.44493 5.47428 5.57942 5.66686 5.71303 5.73824 6.02818 6.20202 6.26497 6.49127 6.97349 7.78647 8.75951 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002115 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.476115 B =13233.361092 C =13874.094527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.146 3.854 3 H 0.053 0.947 4 N -0.684 5.684 5 C 0.094 3.906 6 C -0.144 4.144 7 H 0.097 0.903 8 C -0.168 4.168 9 C -0.133 4.133 10 H 0.106 0.894 11 C -0.081 4.081 12 C -0.131 4.131 13 C -0.145 4.145 14 C -0.138 4.138 15 C -0.164 4.164 16 C -0.045 4.045 17 C -0.205 4.205 18 C 0.114 3.886 19 O -0.233 6.233 20 C -0.413 4.413 21 H 0.101 0.899 22 C -0.025 4.025 23 N -0.921 5.921 24 Si 1.019 2.981 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.242 4.242 29 C -0.064 4.064 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.342 0.658 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.145 0.855 46 H 0.111 0.889 47 H 0.272 0.728 48 H 0.118 0.882 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 12.076 25.402 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.037 3.963 3 H 0.071 0.929 4 N -0.315 5.315 5 C -0.034 4.034 6 C -0.163 4.163 7 H 0.115 0.885 8 C -0.205 4.205 9 C -0.152 4.152 10 H 0.124 0.876 11 C -0.099 4.099 12 C -0.168 4.168 13 C -0.182 4.182 14 C -0.176 4.176 15 C -0.165 4.165 16 C -0.063 4.063 17 C -0.225 4.225 18 C 0.063 3.937 19 O -0.139 6.139 20 C -0.489 4.489 21 H 0.119 0.881 22 C -0.222 4.222 23 N -0.559 5.559 24 Si 0.838 3.162 25 H -0.188 1.188 26 H -0.196 1.196 27 H -0.177 1.177 28 C -0.261 4.261 29 C -0.082 4.082 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.163 0.837 46 H 0.129 0.871 47 H 0.081 0.919 48 H 0.136 0.864 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.205 11.443 25.387 28.031 hybrid contribution 1.097 0.360 -1.386 1.804 sum -2.108 11.803 24.001 26.829 Atomic orbital electron populations 1.21741 0.93525 1.02071 1.01391 1.20153 0.95831 0.94572 0.85747 0.92938 1.60594 1.33608 1.33259 1.04079 1.21540 1.00156 0.92830 0.88918 1.22194 1.03119 1.01879 0.89073 0.88530 1.23177 0.94894 1.01205 1.01195 1.22439 0.97048 0.97417 0.98281 0.87611 1.22140 0.92420 0.99165 0.96204 1.22972 0.95831 0.98426 0.99588 1.22874 0.96894 1.01038 0.97389 1.22915 0.96246 1.01168 0.97238 1.19743 1.06446 0.93486 0.96803 1.20756 0.95647 0.94149 0.95769 1.20485 1.08657 0.99502 0.93831 1.19954 0.92887 0.92464 0.88346 1.83946 1.73607 1.36771 1.19623 1.21812 1.47629 0.91423 0.88049 0.88137 1.26608 0.96461 0.97810 1.01310 1.70187 1.46783 1.10902 1.28024 0.84581 0.79197 0.77390 0.75003 1.18778 1.19604 1.17671 1.21217 1.10290 0.93477 1.01159 1.20937 0.95718 0.99923 0.91666 0.91615 0.92658 0.92867 0.83941 0.95135 0.90600 0.88547 0.88854 0.89379 0.89894 0.91021 0.89877 0.91290 0.92120 0.90567 0.83736 0.87099 0.91855 0.86400 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.39 71.98 0.68 -2.14 16 2 C 0.15 3.42 2.82 44.17 0.12 3.54 16 3 H 0.05 1.15 7.66 -2.39 -0.02 1.13 16 4 N -0.68 -14.57 5.68 -495.44 -2.82 -17.38 16 5 C 0.09 1.65 5.77 86.30 0.50 2.15 16 6 C -0.14 -2.33 5.50 -10.79 -0.06 -2.39 16 7 H 0.10 1.76 8.13 -2.39 -0.02 1.74 16 8 C -0.17 -2.40 9.87 30.62 0.30 -2.10 16 9 C -0.13 -1.83 5.25 -10.77 -0.06 -1.88 16 10 H 0.11 1.38 7.97 -2.38 -0.02 1.36 16 11 C -0.08 -1.06 3.87 -10.27 -0.04 -1.10 16 12 C -0.13 -1.48 7.65 31.18 0.24 -1.24 16 13 C -0.14 -1.71 8.09 31.18 0.25 -1.46 16 14 C -0.14 -1.93 7.49 31.13 0.23 -1.70 16 15 C -0.16 -5.06 4.72 -19.83 -0.09 -5.15 16 16 C -0.05 -1.53 8.99 22.25 0.20 -1.33 16 17 C -0.21 -8.88 9.99 22.39 0.22 -8.66 16 18 C 0.11 5.73 6.65 22.58 0.15 5.88 16 19 O -0.23 -14.18 9.76 -22.77 -0.22 -14.41 16 20 C -0.41 -24.27 9.49 67.92 0.64 -23.62 16 21 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 22 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 23 N -0.92 -57.01 13.67 21.61 0.30 -56.71 16 24 Si 1.02 43.12 29.55 68.60 2.03 45.15 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 28 C -0.24 -10.58 9.17 22.39 0.21 -10.38 16 29 C -0.06 -2.19 9.66 22.25 0.21 -1.98 16 30 H 0.06 1.20 7.45 -2.38 -0.02 1.18 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.34 7.78 7.97 -89.69 -0.71 7.06 16 34 H 0.03 0.54 8.06 -2.38 -0.02 0.52 16 35 H 0.08 1.26 7.17 -2.39 -0.02 1.24 16 36 H 0.10 1.31 8.03 -2.39 -0.02 1.29 16 37 H 0.09 1.30 8.13 -2.39 -0.02 1.28 16 38 H 0.09 1.16 8.07 -2.39 -0.02 1.14 16 39 H 0.08 0.90 7.98 -2.39 -0.02 0.88 16 40 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 45 H 0.14 4.22 7.70 -2.91 -0.02 4.20 16 46 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 49 H 0.14 3.80 8.03 -2.91 -0.02 3.78 16 Total: -1.00 -67.29 396.36 3.68 -63.62 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: 0.21 Total: 34.24 kcal Atomic # 6 Polarization: -58.68 SS G_CDS: 4.18 Total: -54.50 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -2.52 Total: -74.09 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.22 Total: -14.41 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -67.29 3.68 -63.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818346319.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.886 kcal (2) G-P(sol) polarization free energy of solvation -67.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds