Wall clock time and date at job start Tue Mar 31 2020 11:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46956 * 2 1 4 4 C 1.52995 * 109.47358 * 240.00163 * 2 1 3 5 5 C 1.50698 * 109.47057 * 64.99749 * 4 2 1 6 6 H 1.07995 * 120.00169 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99894 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00337 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99945 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46945 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47083 * 119.99607 * 9 7 5 12 12 H 1.48502 * 109.47000 * 239.99712 * 9 7 5 13 13 C 1.53003 * 109.47253 * 119.99900 * 2 1 3 14 14 N 1.46902 * 109.47189 * 295.00219 * 13 2 1 15 15 C 1.46900 * 110.99878 * 174.84341 * 14 13 2 16 16 H 1.09003 * 109.27693 * 35.95053 * 15 14 13 17 17 C 1.53119 * 109.37412 * 276.24101 * 15 14 13 18 18 C 1.52967 * 108.15418 * 193.35897 * 17 15 14 19 19 C 1.53283 * 113.59904 * 290.36938 * 18 17 15 20 20 C 1.53879 * 86.91773 * 220.00439 * 19 18 17 21 21 C 1.53245 * 113.66669 * 192.21498 * 18 17 15 22 22 O 1.42348 * 111.91186 * 61.20583 * 18 17 15 23 23 C 1.36064 * 117.40882 * 315.20946 * 22 18 17 24 24 C 1.39171 * 118.18392 * 193.89938 * 23 22 18 25 25 C 1.37958 * 120.24813 * 180.32612 * 24 23 22 26 26 C 1.38288 * 119.87440 * 0.04683 * 25 24 23 27 27 C 1.38043 * 120.00596 * 359.81720 * 26 25 24 28 28 C 1.38285 * 122.00438 * 13.97979 * 23 22 18 29 29 H 1.09004 * 109.46956 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47035 * 299.99832 * 1 2 3 31 31 H 1.08999 * 109.47067 * 59.99915 * 1 2 3 32 32 H 1.09005 * 109.47335 * 184.99882 * 4 2 1 33 33 H 1.08999 * 109.47256 * 304.99980 * 4 2 1 34 34 H 0.96999 * 120.00199 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46900 * 175.00196 * 13 2 1 36 36 H 1.09004 * 109.46916 * 55.00297 * 13 2 1 37 37 H 1.00899 * 110.99500 * 298.79681 * 14 13 2 38 38 H 1.09004 * 109.73177 * 73.68139 * 17 15 14 39 39 H 1.08998 * 109.73622 * 313.03906 * 17 15 14 40 40 H 1.09005 * 113.64116 * 334.50646 * 19 18 17 41 41 H 1.09005 * 113.64598 * 105.50043 * 19 18 17 42 42 H 1.09002 * 113.59574 * 270.47216 * 20 19 18 43 43 H 1.08999 * 113.66863 * 139.63330 * 20 19 18 44 44 H 1.08999 * 113.63882 * 254.43868 * 21 18 17 45 45 H 1.09000 * 113.63896 * 25.32827 * 21 18 17 46 46 H 1.08000 * 119.87427 * 0.31680 * 24 23 22 47 47 H 1.07999 * 120.06109 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.99579 * 179.83669 * 26 25 24 49 49 H 1.08005 * 119.78315 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 1 1.0806 0.9746 -2.3756 7 6 1.9924 -0.4022 -3.7283 8 7 2.6756 -1.5192 -3.8512 9 14 1.4988 0.5630 -5.2496 10 1 0.7422 1.7745 -4.8433 11 1 2.7171 0.9669 -5.9964 12 1 0.6441 -0.2856 -6.1184 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0374 2.4457 15 6 2.0175 -0.6868 3.6702 16 1 2.9612 -1.2085 3.5112 17 6 0.9239 -1.7052 4.0042 18 6 1.1533 -2.1992 5.4337 19 6 2.4004 -3.0771 5.5869 20 6 1.5652 -3.9534 6.5368 21 6 0.3192 -3.4315 5.7999 22 8 1.0711 -1.1401 6.3813 23 6 1.7114 0.0218 6.0792 24 6 1.8962 0.9540 7.0959 25 6 2.5340 2.1492 6.8353 26 6 2.9905 2.4224 5.5588 27 6 2.8110 1.4985 4.5490 28 6 2.1738 0.2938 4.8046 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7994 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 2.9223 -1.8424 -4.7319 35 1 3.1263 -0.7994 1.2056 36 1 1.6054 -1.7198 1.2951 37 1 2.0582 0.9607 2.4363 38 1 0.9790 -2.5449 3.3114 39 1 -0.0550 -1.2314 3.9312 40 1 2.6931 -3.5849 4.6678 41 1 3.2330 -2.5721 6.0768 42 1 1.6186 -3.6402 7.5795 43 1 1.7331 -5.0225 6.4070 44 1 -0.5191 -3.2113 6.4608 45 1 0.0329 -4.0368 4.9398 46 1 1.5388 0.7410 8.0925 47 1 2.6762 2.8703 7.6266 48 1 3.4877 3.3586 5.3521 49 1 3.1694 1.7154 3.5535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877095179.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:14 Heat of formation + Delta-G solvation = -3.890366 kcal Electronic energy + Delta-G solvation = -26647.657208 eV Core-core repulsion = 23153.713362 eV Total energy + Delta-G solvation = -3493.943846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.41126 -38.84725 -37.21257 -36.13909 -34.71186 -32.38639 -30.62227 -30.28161 -29.73528 -26.83652 -26.11927 -25.55533 -24.03815 -23.67097 -22.59595 -21.93345 -20.80288 -19.44804 -18.98843 -17.66133 -16.48874 -16.37700 -15.85958 -15.71102 -15.39737 -14.88436 -14.54633 -14.47807 -14.34854 -14.18813 -13.95300 -13.44791 -13.17074 -12.76050 -12.67366 -12.60517 -12.45039 -12.14368 -11.83970 -11.70597 -11.45267 -11.32716 -11.30694 -11.12035 -10.88095 -10.78158 -10.69934 -10.45627 -10.30913 -10.27877 -10.09700 -9.70660 -9.19570 -9.00521 -8.94815 -8.37215 -8.33621 -8.04800 -5.98282 -3.99206 1.16754 1.30095 2.96494 3.31695 3.39391 3.43615 3.57997 4.18727 4.26245 4.31981 4.45288 4.49038 4.54397 4.62468 4.75265 4.90177 5.03042 5.08429 5.20661 5.32735 5.37741 5.40430 5.42589 5.45718 5.52516 5.64568 5.64996 5.66098 5.72979 5.83495 5.87019 5.92804 6.03054 6.11181 6.15262 6.17938 6.32946 6.38040 6.40842 6.53791 6.66977 6.69393 7.00013 7.18100 7.18972 7.32494 7.35246 7.58586 7.69081 7.84459 8.02003 8.46269 9.07420 9.64327 11.13283 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.002967 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.105233 B = 9433.905470 C =10584.361112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.062 3.938 14 N -0.679 5.679 15 C 0.133 3.867 16 H 0.054 0.946 17 C -0.125 4.125 18 C 0.091 3.909 19 C -0.158 4.158 20 C -0.136 4.136 21 C -0.121 4.121 22 O -0.291 6.291 23 C 0.140 3.860 24 C -0.152 4.152 25 C -0.089 4.089 26 C -0.151 4.151 27 C -0.083 4.083 28 C -0.150 4.150 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.340 0.660 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.124 0.876 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 0.101 24.252 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.312 5.312 15 C 0.023 3.977 16 H 0.072 0.928 17 C -0.163 4.163 18 C 0.052 3.948 19 C -0.196 4.196 20 C -0.173 4.173 21 C -0.158 4.158 22 O -0.205 6.205 23 C 0.095 3.905 24 C -0.171 4.171 25 C -0.107 4.107 26 C -0.169 4.169 27 C -0.101 4.101 28 C -0.151 4.151 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.161 0.839 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.120 0.880 46 H 0.146 0.854 47 H 0.145 0.855 48 H 0.142 0.858 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.324 -0.296 24.265 24.302 hybrid contribution 0.895 0.624 -1.210 1.629 sum -0.429 0.328 23.055 23.061 Atomic orbital electron populations 1.21579 0.95688 1.00488 1.00197 1.21177 0.96042 0.98916 0.93821 0.92845 1.19124 0.95866 0.95568 0.90463 1.21275 1.34476 1.08262 0.90957 0.92503 1.25023 0.95343 0.95102 0.99109 1.69974 1.39202 1.21276 1.23253 0.86580 0.78245 0.80166 0.83293 1.19731 1.21118 1.21084 1.22237 0.97136 0.97742 0.89478 1.60671 1.64367 1.05684 1.00442 1.20186 0.96722 0.92520 0.88260 0.92822 1.22040 1.00568 0.99454 0.94233 1.22532 0.97968 0.85886 0.88395 1.23480 0.97122 0.98115 1.00873 1.22842 0.95758 0.99662 0.99037 1.22983 0.97667 0.93800 1.01395 1.85946 1.69106 1.20205 1.45204 1.18662 0.93119 0.86403 0.92323 1.20546 1.03971 0.94309 0.98272 1.20903 0.96982 0.95865 0.96976 1.20988 1.02817 0.99938 0.93176 1.20925 0.97180 0.92684 0.99332 1.19884 1.03787 0.97642 0.93761 0.94248 0.93899 0.92788 0.96972 0.96586 0.93168 0.95667 0.91483 0.83925 0.89716 0.89543 0.88675 0.90914 0.89853 0.90993 0.90218 0.88036 0.85419 0.85527 0.85832 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.63 2.52 -90.62 -0.23 -1.86 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.30 8.41 -34.44 -0.29 -14.59 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 C 0.06 1.06 4.85 -3.82 -0.02 1.04 16 14 N -0.68 -9.91 5.72 -107.85 -0.62 -10.52 16 15 C 0.13 1.73 2.39 -68.77 -0.16 1.57 16 16 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 17 C -0.12 -1.52 4.72 -26.69 -0.13 -1.65 16 18 C 0.09 0.99 1.04 -90.37 -0.09 0.90 16 19 C -0.16 -1.53 7.13 -26.13 -0.19 -1.72 16 20 C -0.14 -1.12 8.04 -25.82 -0.21 -1.33 16 21 C -0.12 -1.07 7.49 -26.15 -0.20 -1.27 16 22 O -0.29 -3.64 9.96 -19.94 -0.20 -3.84 16 23 C 0.14 1.77 6.50 -39.22 -0.26 1.52 16 24 C -0.15 -1.67 9.93 -39.34 -0.39 -2.06 16 25 C -0.09 -0.86 10.04 -39.67 -0.40 -1.26 16 26 C -0.15 -1.54 10.04 -39.63 -0.40 -1.94 16 27 C -0.08 -0.97 8.93 -39.50 -0.35 -1.32 16 28 C -0.15 -1.91 5.57 -104.42 -0.58 -2.49 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 31 H 0.05 1.13 6.95 -51.93 -0.36 0.76 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 1.14 7.52 -51.93 -0.39 0.75 16 37 H 0.34 4.77 6.14 -39.29 -0.24 4.53 16 38 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 47 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 49 H 0.12 1.36 6.48 -52.48 -0.34 1.02 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -30.42 383.74 -11.48 -41.90 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.38 Total: 2.65 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -3.78 Total: -26.47 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.12 Total: -36.72 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: -0.20 Total: -3.84 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.42 -11.48 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877095179.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.013 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds