Wall clock time and date at job start Tue Mar 31 2020 11:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46956 * 2 1 4 4 C 1.52995 * 109.47358 * 240.00163 * 2 1 3 5 5 C 1.50698 * 109.47057 * 64.99749 * 4 2 1 6 6 H 1.07995 * 120.00169 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99894 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00337 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99945 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46945 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47083 * 119.99607 * 9 7 5 12 12 H 1.48502 * 109.47000 * 239.99712 * 9 7 5 13 13 C 1.53003 * 109.47253 * 119.99900 * 2 1 3 14 14 N 1.46902 * 109.47189 * 295.00219 * 13 2 1 15 15 C 1.46900 * 110.99878 * 174.84341 * 14 13 2 16 16 H 1.09003 * 109.27693 * 35.95053 * 15 14 13 17 17 C 1.53119 * 109.37412 * 276.24101 * 15 14 13 18 18 C 1.52967 * 108.15418 * 193.35897 * 17 15 14 19 19 C 1.53283 * 113.59904 * 290.36938 * 18 17 15 20 20 C 1.53879 * 86.91773 * 220.00439 * 19 18 17 21 21 C 1.53245 * 113.66669 * 192.21498 * 18 17 15 22 22 O 1.42348 * 111.91186 * 61.20583 * 18 17 15 23 23 C 1.36064 * 117.40882 * 315.20946 * 22 18 17 24 24 C 1.39171 * 118.18392 * 193.89938 * 23 22 18 25 25 C 1.37958 * 120.24813 * 180.32612 * 24 23 22 26 26 C 1.38288 * 119.87440 * 0.04683 * 25 24 23 27 27 C 1.38043 * 120.00596 * 359.81720 * 26 25 24 28 28 C 1.38285 * 122.00438 * 13.97979 * 23 22 18 29 29 H 1.09004 * 109.46956 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47035 * 299.99832 * 1 2 3 31 31 H 1.08999 * 109.47067 * 59.99915 * 1 2 3 32 32 H 1.09005 * 109.47335 * 184.99882 * 4 2 1 33 33 H 1.08999 * 109.47256 * 304.99980 * 4 2 1 34 34 H 0.96999 * 120.00199 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46900 * 175.00196 * 13 2 1 36 36 H 1.09004 * 109.46916 * 55.00297 * 13 2 1 37 37 H 1.00899 * 110.99500 * 298.79681 * 14 13 2 38 38 H 1.09004 * 109.73177 * 73.68139 * 17 15 14 39 39 H 1.08998 * 109.73622 * 313.03906 * 17 15 14 40 40 H 1.09005 * 113.64116 * 334.50646 * 19 18 17 41 41 H 1.09005 * 113.64598 * 105.50043 * 19 18 17 42 42 H 1.09002 * 113.59574 * 270.47216 * 20 19 18 43 43 H 1.08999 * 113.66863 * 139.63330 * 20 19 18 44 44 H 1.08999 * 113.63882 * 254.43868 * 21 18 17 45 45 H 1.09000 * 113.63896 * 25.32827 * 21 18 17 46 46 H 1.08000 * 119.87427 * 0.31680 * 24 23 22 47 47 H 1.07999 * 120.06109 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.99579 * 179.83669 * 26 25 24 49 49 H 1.08005 * 119.78315 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 1 1.0806 0.9746 -2.3756 7 6 1.9924 -0.4022 -3.7283 8 7 2.6756 -1.5192 -3.8512 9 14 1.4988 0.5630 -5.2496 10 1 0.7422 1.7745 -4.8433 11 1 2.7171 0.9669 -5.9964 12 1 0.6441 -0.2856 -6.1184 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0374 2.4457 15 6 2.0175 -0.6868 3.6702 16 1 2.9612 -1.2085 3.5112 17 6 0.9239 -1.7052 4.0042 18 6 1.1533 -2.1992 5.4337 19 6 2.4004 -3.0771 5.5869 20 6 1.5652 -3.9534 6.5368 21 6 0.3192 -3.4315 5.7999 22 8 1.0711 -1.1401 6.3813 23 6 1.7114 0.0218 6.0792 24 6 1.8962 0.9540 7.0959 25 6 2.5340 2.1492 6.8353 26 6 2.9905 2.4224 5.5588 27 6 2.8110 1.4985 4.5490 28 6 2.1738 0.2938 4.8046 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7994 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 2.9223 -1.8424 -4.7319 35 1 3.1263 -0.7994 1.2056 36 1 1.6054 -1.7198 1.2951 37 1 2.0582 0.9607 2.4363 38 1 0.9790 -2.5449 3.3114 39 1 -0.0550 -1.2314 3.9312 40 1 2.6931 -3.5849 4.6678 41 1 3.2330 -2.5721 6.0768 42 1 1.6186 -3.6402 7.5795 43 1 1.7331 -5.0225 6.4070 44 1 -0.5191 -3.2113 6.4608 45 1 0.0329 -4.0368 4.9398 46 1 1.5388 0.7410 8.0925 47 1 2.6762 2.8703 7.6266 48 1 3.4877 3.3586 5.3521 49 1 3.1694 1.7154 3.5535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877095179.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:12 Heat of formation + Delta-G solvation = -19.319461 kcal Electronic energy + Delta-G solvation = -26648.326264 eV Core-core repulsion = 23153.713362 eV Total energy + Delta-G solvation = -3494.612902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27757 -39.66092 -38.53043 -37.01781 -36.21275 -34.32028 -31.87133 -31.21980 -30.58082 -28.79772 -26.99387 -26.83331 -25.26101 -24.69344 -23.95528 -22.98725 -21.69261 -20.90473 -20.02774 -18.62892 -18.46256 -17.30663 -16.85919 -16.72826 -16.52284 -16.30680 -15.78626 -15.60275 -15.42727 -15.22826 -15.10671 -14.69705 -14.37736 -14.07650 -13.89033 -13.69310 -13.44654 -13.35533 -13.30534 -13.01045 -12.79887 -12.70908 -12.51621 -12.37323 -12.23118 -12.12356 -11.98001 -11.84502 -11.63213 -11.49777 -11.19025 -11.12018 -11.07964 -10.84177 -10.54068 -9.95199 -9.40679 -9.06420 -8.17869 -6.26606 0.31782 0.45000 1.39423 1.40229 1.53045 2.14205 2.41689 2.71934 3.15336 3.16046 3.41302 3.48340 3.57953 3.73492 3.81854 3.91495 4.07449 4.14375 4.17379 4.23554 4.27800 4.36070 4.50991 4.53962 4.60445 4.63469 4.69728 4.73201 4.78998 4.86338 4.91482 4.94929 4.99950 5.00979 5.02862 5.09102 5.19629 5.27727 5.31568 5.38649 5.44676 5.48031 5.50132 5.56017 5.57153 5.80068 5.86898 5.88542 6.01508 6.30890 6.39049 6.48172 6.89388 7.41672 8.94325 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.002967 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.105233 B = 9433.905470 C =10584.361112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 H 0.052 0.948 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.078 3.922 14 N -0.676 5.676 15 C 0.136 3.864 16 H 0.048 0.952 17 C -0.121 4.121 18 C 0.082 3.918 19 C -0.158 4.158 20 C -0.126 4.126 21 C -0.118 4.118 22 O -0.301 6.301 23 C 0.122 3.878 24 C -0.160 4.160 25 C -0.083 4.083 26 C -0.152 4.152 27 C -0.096 4.096 28 C -0.168 4.168 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.037 0.963 32 H -0.014 1.014 33 H -0.009 1.009 34 H 0.262 0.738 35 H 0.020 0.980 36 H 0.066 0.934 37 H 0.344 0.656 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.112 0.888 46 H 0.142 0.858 47 H 0.158 0.842 48 H 0.146 0.854 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 1.183 25.485 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.051 4.051 14 N -0.309 5.309 15 C 0.027 3.973 16 H 0.066 0.934 17 C -0.160 4.160 18 C 0.044 3.956 19 C -0.196 4.196 20 C -0.164 4.164 21 C -0.155 4.155 22 O -0.215 6.215 23 C 0.076 3.924 24 C -0.179 4.179 25 C -0.101 4.101 26 C -0.170 4.170 27 C -0.115 4.115 28 C -0.169 4.169 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.005 0.995 33 H 0.009 0.991 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.165 0.835 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.131 0.869 46 H 0.160 0.840 47 H 0.176 0.824 48 H 0.164 0.836 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.777 0.796 25.515 25.589 hybrid contribution 1.067 0.320 -1.536 1.897 sum -0.710 1.115 23.979 24.015 Atomic orbital electron populations 1.21466 0.94760 1.00367 1.00318 1.20984 0.96647 0.98392 0.93055 0.92935 1.19002 0.94099 0.94707 0.92592 1.21661 1.34302 1.08518 0.92081 0.92193 1.25932 0.95285 0.96099 1.02586 1.70101 1.40353 1.22923 1.24196 0.85476 0.78069 0.78919 0.79072 1.18643 1.20526 1.20552 1.21921 0.96585 0.97450 0.89186 1.60611 1.64327 1.05785 1.00190 1.20152 0.96722 0.92746 0.87698 0.93398 1.21997 0.99334 0.99145 0.95493 1.22725 0.99469 0.86105 0.87335 1.23482 0.96497 0.98156 1.01437 1.22804 0.94638 1.00341 0.98567 1.23040 0.97786 0.92729 1.01916 1.85927 1.69368 1.20540 1.45663 1.18934 0.93710 0.86932 0.92779 1.20860 1.03955 0.94446 0.98594 1.21297 0.95439 0.95788 0.97576 1.21313 1.02322 1.00365 0.93037 1.21082 0.97502 0.92875 1.00045 1.19896 1.05124 0.98128 0.93769 0.94494 0.91844 0.94408 0.99519 0.99051 0.92952 0.96193 0.91586 0.83498 0.89522 0.91061 0.88320 0.91837 0.89864 0.89353 0.90034 0.86940 0.84021 0.82393 0.83588 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 2 C -0.07 -2.94 2.52 -10.80 -0.03 -2.97 16 3 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -29.89 8.41 25.60 0.22 -29.67 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 9 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.08 2.65 4.85 86.30 0.42 3.07 16 14 N -0.68 -19.62 5.72 -495.12 -2.83 -22.46 16 15 C 0.14 3.56 2.39 44.23 0.11 3.67 16 16 H 0.05 1.30 7.79 -2.39 -0.02 1.29 16 17 C -0.12 -2.96 4.72 30.62 0.14 -2.82 16 18 C 0.08 1.76 1.04 -10.63 -0.01 1.75 16 19 C -0.16 -2.96 7.13 30.99 0.22 -2.74 16 20 C -0.13 -1.91 8.04 31.18 0.25 -1.65 16 21 C -0.12 -1.94 7.49 30.97 0.23 -1.71 16 22 O -0.30 -7.39 9.96 -94.28 -0.94 -8.33 16 23 C 0.12 3.00 6.50 22.51 0.15 3.14 16 24 C -0.16 -3.25 9.93 22.43 0.22 -3.02 16 25 C -0.08 -1.40 10.04 22.22 0.22 -1.18 16 26 C -0.15 -2.81 10.04 22.24 0.22 -2.58 16 27 C -0.10 -2.18 8.93 22.32 0.20 -1.98 16 28 C -0.17 -4.23 5.57 -19.73 -0.11 -4.34 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.06 2.18 7.75 -2.39 -0.02 2.16 16 31 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 32 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 2.27 7.52 -2.39 -0.02 2.25 16 37 H 0.34 9.53 6.14 -89.69 -0.55 8.98 16 38 H 0.09 2.02 7.71 -2.39 -0.02 2.00 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.10 1.75 8.10 -2.38 -0.02 1.73 16 41 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.11 1.60 8.10 -2.39 -0.02 1.58 16 46 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 47 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 48 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 49 H 0.13 2.69 6.48 -2.91 -0.02 2.67 16 Total: -1.00 -65.68 383.74 2.59 -63.09 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.37 Total: 22.35 kcal Atomic # 6 Polarization: -48.16 SS G_CDS: 3.69 Total: -44.47 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.55 Total: -79.27 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.94 Total: -8.33 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -65.68 2.59 -63.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877095179.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.767 kcal (2) G-P(sol) polarization free energy of solvation -65.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds