Wall clock time and date at job start Tue Mar 31 2020 11:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47270 * 2 1 4 4 C 1.53003 * 109.46906 * 240.00557 * 2 1 3 5 5 C 1.50693 * 109.47309 * 65.00018 * 4 2 1 6 6 H 1.08000 * 120.00216 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00147 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99848 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00349 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47376 * 89.99719 * 9 7 5 11 11 H 1.48500 * 109.47277 * 209.99895 * 9 7 5 12 12 H 1.48510 * 109.46698 * 329.99818 * 9 7 5 13 13 C 1.52999 * 109.47451 * 120.00019 * 2 1 3 14 14 N 1.46893 * 109.47158 * 295.00257 * 13 2 1 15 15 C 1.48531 * 111.00212 * 287.38810 * 14 13 2 16 16 C 1.54927 * 103.21274 * 200.24712 * 15 14 13 17 17 C 1.54611 * 102.93302 * 37.42007 * 16 15 14 18 18 C 1.47916 * 111.00023 * 169.99532 * 14 13 2 19 19 C 1.51788 * 109.50628 * 220.07862 * 17 16 15 20 20 C 1.51693 * 112.08843 * 289.48089 * 19 17 16 21 21 C 1.50201 * 112.10737 * 321.58913 * 20 19 17 22 22 C 1.38629 * 118.74412 * 193.91111 * 21 20 19 23 23 C 1.38055 * 120.43415 * 180.76209 * 22 21 20 24 24 C 1.38286 * 119.97309 * 359.95667 * 23 22 21 25 25 C 1.37940 * 119.91031 * 359.81972 * 24 23 22 26 26 C 1.38370 * 121.58264 * 14.36773 * 21 20 19 27 27 O 1.35312 * 121.62630 * 358.96782 * 26 21 20 28 28 H 1.08992 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46981 * 299.99934 * 1 2 3 30 30 H 1.08997 * 109.47107 * 59.99529 * 1 2 3 31 31 H 1.09003 * 109.46915 * 185.00005 * 4 2 1 32 32 H 1.08996 * 109.46598 * 304.99766 * 4 2 1 33 33 H 0.97002 * 120.00295 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47381 * 174.99405 * 13 2 1 35 35 H 1.09006 * 109.46766 * 55.00156 * 13 2 1 36 36 H 1.09006 * 110.66214 * 318.67601 * 15 14 13 37 37 H 1.08995 * 110.66868 * 81.63841 * 15 14 13 38 38 H 1.09004 * 110.71781 * 279.06260 * 16 15 14 39 39 H 1.08998 * 110.72017 * 155.78514 * 16 15 14 40 40 H 1.09001 * 109.91460 * 26.55015 * 18 14 13 41 41 H 1.08997 * 109.91775 * 265.25168 * 18 14 13 42 42 H 1.09002 * 108.95756 * 50.15476 * 19 17 16 43 43 H 1.08996 * 108.95806 * 168.89552 * 19 17 16 44 44 H 1.09007 * 108.95140 * 82.28353 * 20 19 17 45 45 H 1.09000 * 108.95408 * 201.01502 * 20 19 17 46 46 H 1.08004 * 119.78794 * 1.04125 * 22 21 20 47 47 H 1.08002 * 120.00793 * 179.97438 * 23 22 21 48 48 H 1.08002 * 120.04432 * 179.84314 * 24 23 22 49 49 H 1.08000 * 119.86594 * 180.10579 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9923 -0.4020 -3.7284 8 7 2.6754 -1.5191 -3.8513 9 14 1.4975 0.5625 -5.2497 10 1 2.5626 1.5420 -5.5830 11 1 1.3101 -0.3717 -6.3888 12 1 0.2263 1.2838 -4.9867 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.4560 1.2794 2.5730 16 6 2.3086 1.6447 4.0713 17 6 2.3247 0.2641 4.7673 18 6 1.9143 -0.7412 3.6755 19 6 1.3039 0.2508 5.8906 20 6 1.7269 1.1248 7.0561 21 6 3.2034 1.0411 7.3187 22 6 3.6975 1.5415 8.5134 23 6 5.0505 1.4968 8.7841 24 6 5.9221 0.9493 7.8606 25 6 5.4370 0.4453 6.6717 26 6 4.0734 0.4878 6.3959 27 8 3.6329 -0.0224 5.2226 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.1263 -0.7994 -1.2057 32 1 1.6053 -1.7196 -1.2952 33 1 2.9227 -1.8420 -4.7320 34 1 3.1264 -0.7995 1.2055 35 1 1.6055 -1.7198 1.2951 36 1 3.5000 1.0886 2.3244 37 1 2.0491 2.0680 1.9401 38 1 1.3635 2.1567 4.2522 39 1 3.1486 2.2542 4.4042 40 1 2.7237 -1.4500 3.5003 41 1 1.0118 -1.2716 3.9792 42 1 0.3496 0.6108 5.5061 43 1 1.1796 -0.7727 6.2440 44 1 1.4643 2.1597 6.8362 45 1 1.1911 0.8062 7.9502 46 1 3.0190 1.9651 9.2392 47 1 5.4280 1.8890 9.7169 48 1 6.9811 0.9160 8.0700 49 1 6.1182 0.0163 5.9517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877540274.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:52 Heat of formation + Delta-G solvation = -26.091504 kcal Electronic energy + Delta-G solvation = -26454.569637 eV Core-core repulsion = 22959.663077 eV Total energy + Delta-G solvation = -3494.906560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33322 -38.96907 -37.22341 -35.26032 -34.33347 -32.37033 -31.00208 -30.45761 -29.79460 -27.67728 -26.69244 -25.22789 -24.23246 -22.94682 -22.66696 -22.35409 -20.96772 -19.37509 -18.90954 -17.68350 -16.74175 -16.25162 -15.92596 -15.61227 -15.25114 -14.85262 -14.59668 -14.57566 -14.42360 -13.92329 -13.55514 -13.34308 -13.29158 -13.08021 -12.78665 -12.67614 -12.49062 -12.08651 -11.86955 -11.64592 -11.57497 -11.39973 -11.32137 -11.11347 -10.98824 -10.84417 -10.69273 -10.58655 -10.47554 -10.26553 -10.18256 -9.61522 -9.11613 -9.01563 -8.93733 -8.30917 -8.30242 -8.19890 -5.95667 -3.96624 1.07381 1.22408 2.94218 3.34158 3.40451 3.43783 3.51089 4.17053 4.26744 4.34882 4.44478 4.50087 4.54296 4.67495 4.81419 4.86049 4.95981 5.15590 5.21275 5.28428 5.34128 5.40022 5.41367 5.47624 5.60758 5.61422 5.68148 5.71578 5.74755 5.79358 5.88566 5.97218 6.01791 6.07103 6.11433 6.18599 6.24604 6.29518 6.39282 6.53440 6.59863 6.70536 6.99553 7.03672 7.20021 7.25883 7.38705 7.46748 7.71857 7.87829 8.04724 8.48845 9.09752 9.66575 11.15907 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.028715 B = 0.002435 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.872185 B =11496.242872 C =11894.800580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 H 0.054 0.946 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.051 3.949 14 N -0.507 5.507 15 C 0.038 3.962 16 C -0.140 4.140 17 C 0.116 3.884 18 C 0.047 3.953 19 C -0.139 4.139 20 C -0.075 4.075 21 C -0.162 4.162 22 C -0.085 4.085 23 C -0.158 4.158 24 C -0.088 4.088 25 C -0.153 4.153 26 C 0.145 3.855 27 O -0.305 6.305 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.016 0.984 33 H 0.259 0.741 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.127 0.873 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 5.346 26.806 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.076 4.076 14 N -0.232 5.232 15 C -0.089 4.089 16 C -0.178 4.178 17 C 0.077 3.923 18 C -0.081 4.081 19 C -0.177 4.177 20 C -0.112 4.112 21 C -0.163 4.163 22 C -0.104 4.104 23 C -0.177 4.177 24 C -0.106 4.106 25 C -0.171 4.171 26 C 0.099 3.901 27 O -0.219 6.219 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.145 0.855 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.690 5.206 26.466 26.982 hybrid contribution 0.614 0.305 -0.772 1.032 sum 1.305 5.511 25.694 26.311 Atomic orbital electron populations 1.21583 0.95772 1.00476 1.00168 1.21154 0.95911 0.99020 0.93523 0.92705 1.19134 0.95907 0.95579 0.90493 1.21225 1.34512 1.08232 0.90954 0.92586 1.25025 0.95395 0.95090 0.99091 1.69969 1.39170 1.21216 1.23346 0.86633 0.78916 0.79804 0.82882 1.20781 1.21321 1.19891 1.22538 0.97925 0.97332 0.89838 1.64945 1.52195 1.04791 1.01244 1.23208 0.96569 0.93933 0.95229 1.23158 1.02875 0.95818 0.95987 1.22084 0.80428 0.96097 0.93684 1.22936 1.00768 0.95141 0.89278 1.21619 0.99520 1.01427 0.95130 1.20004 0.91560 1.00838 0.98755 1.19709 0.95742 1.05123 0.95762 1.20887 0.95581 0.98235 0.95647 1.20969 0.93407 1.03127 1.00172 1.20909 0.99748 0.96982 0.92940 1.20616 0.92523 1.04872 0.99106 1.18638 0.92472 0.93930 0.85043 1.85439 1.32251 1.69239 1.34983 0.94240 0.93919 0.92780 0.96973 0.96587 0.93121 0.94816 0.91224 0.93378 0.89459 0.89665 0.90759 0.92184 0.88959 0.88995 0.90913 0.90558 0.90149 0.86062 0.86056 0.85539 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.59 2.37 -90.62 -0.21 -1.80 16 3 H 0.05 1.15 7.17 -51.93 -0.37 0.78 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.39 8.41 -34.44 -0.29 -14.68 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.05 0.90 4.10 -3.83 -0.02 0.88 16 14 N -0.51 -7.53 4.70 -230.46 -1.08 -8.61 16 15 C 0.04 0.54 5.91 -1.90 -0.01 0.53 16 16 C -0.14 -1.63 5.95 -24.87 -0.15 -1.77 16 17 C 0.12 1.34 0.98 -89.88 -0.09 1.25 16 18 C 0.05 0.60 6.11 -2.75 -0.02 0.59 16 19 C -0.14 -1.29 4.43 -28.01 -0.12 -1.41 16 20 C -0.07 -0.63 5.49 -28.79 -0.16 -0.79 16 21 C -0.16 -1.66 5.79 -104.67 -0.61 -2.27 16 22 C -0.09 -0.75 9.66 -39.50 -0.38 -1.13 16 23 C -0.16 -1.33 10.04 -39.63 -0.40 -1.72 16 24 C -0.09 -0.78 10.04 -39.67 -0.40 -1.18 16 25 C -0.15 -1.65 9.94 -39.34 -0.39 -2.04 16 26 C 0.14 1.72 6.32 -39.18 -0.25 1.47 16 27 O -0.31 -4.00 9.31 -17.53 -0.16 -4.16 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 30 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 34 H 0.03 0.62 7.83 -51.93 -0.41 0.21 16 35 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 36 H 0.05 0.72 7.81 -51.93 -0.41 0.32 16 37 H 0.09 1.24 7.67 -51.93 -0.40 0.84 16 38 H 0.08 0.89 7.66 -51.93 -0.40 0.49 16 39 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 40 H 0.06 0.83 7.58 -51.93 -0.39 0.44 16 41 H 0.09 1.06 7.65 -51.93 -0.40 0.67 16 42 H 0.09 0.77 7.90 -51.93 -0.41 0.36 16 43 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 48 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -30.81 380.90 -11.68 -42.49 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.51 Total: -1.73 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -3.38 Total: -24.10 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.35 Total: -35.06 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.16 Total: -4.16 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.81 -11.68 -42.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877540274.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.394 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds