Wall clock time and date at job start Tue Mar 31 2020 11:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47270 * 2 1 4 4 C 1.53003 * 109.46906 * 240.00557 * 2 1 3 5 5 C 1.50693 * 109.47309 * 65.00018 * 4 2 1 6 6 H 1.08000 * 120.00216 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00147 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99848 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00349 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47376 * 89.99719 * 9 7 5 11 11 H 1.48500 * 109.47277 * 209.99895 * 9 7 5 12 12 H 1.48510 * 109.46698 * 329.99818 * 9 7 5 13 13 C 1.52999 * 109.47451 * 120.00019 * 2 1 3 14 14 N 1.46893 * 109.47158 * 295.00257 * 13 2 1 15 15 C 1.48531 * 111.00212 * 287.38810 * 14 13 2 16 16 C 1.54927 * 103.21274 * 200.24712 * 15 14 13 17 17 C 1.54611 * 102.93302 * 37.42007 * 16 15 14 18 18 C 1.47916 * 111.00023 * 169.99532 * 14 13 2 19 19 C 1.51788 * 109.50628 * 220.07862 * 17 16 15 20 20 C 1.51693 * 112.08843 * 289.48089 * 19 17 16 21 21 C 1.50201 * 112.10737 * 321.58913 * 20 19 17 22 22 C 1.38629 * 118.74412 * 193.91111 * 21 20 19 23 23 C 1.38055 * 120.43415 * 180.76209 * 22 21 20 24 24 C 1.38286 * 119.97309 * 359.95667 * 23 22 21 25 25 C 1.37940 * 119.91031 * 359.81972 * 24 23 22 26 26 C 1.38370 * 121.58264 * 14.36773 * 21 20 19 27 27 O 1.35312 * 121.62630 * 358.96782 * 26 21 20 28 28 H 1.08992 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46981 * 299.99934 * 1 2 3 30 30 H 1.08997 * 109.47107 * 59.99529 * 1 2 3 31 31 H 1.09003 * 109.46915 * 185.00005 * 4 2 1 32 32 H 1.08996 * 109.46598 * 304.99766 * 4 2 1 33 33 H 0.97002 * 120.00295 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47381 * 174.99405 * 13 2 1 35 35 H 1.09006 * 109.46766 * 55.00156 * 13 2 1 36 36 H 1.09006 * 110.66214 * 318.67601 * 15 14 13 37 37 H 1.08995 * 110.66868 * 81.63841 * 15 14 13 38 38 H 1.09004 * 110.71781 * 279.06260 * 16 15 14 39 39 H 1.08998 * 110.72017 * 155.78514 * 16 15 14 40 40 H 1.09001 * 109.91460 * 26.55015 * 18 14 13 41 41 H 1.08997 * 109.91775 * 265.25168 * 18 14 13 42 42 H 1.09002 * 108.95756 * 50.15476 * 19 17 16 43 43 H 1.08996 * 108.95806 * 168.89552 * 19 17 16 44 44 H 1.09007 * 108.95140 * 82.28353 * 20 19 17 45 45 H 1.09000 * 108.95408 * 201.01502 * 20 19 17 46 46 H 1.08004 * 119.78794 * 1.04125 * 22 21 20 47 47 H 1.08002 * 120.00793 * 179.97438 * 23 22 21 48 48 H 1.08002 * 120.04432 * 179.84314 * 24 23 22 49 49 H 1.08000 * 119.86594 * 180.10579 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9923 -0.4020 -3.7284 8 7 2.6754 -1.5191 -3.8513 9 14 1.4975 0.5625 -5.2497 10 1 2.5626 1.5420 -5.5830 11 1 1.3101 -0.3717 -6.3888 12 1 0.2263 1.2838 -4.9867 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.4560 1.2794 2.5730 16 6 2.3086 1.6447 4.0713 17 6 2.3247 0.2641 4.7673 18 6 1.9143 -0.7412 3.6755 19 6 1.3039 0.2508 5.8906 20 6 1.7269 1.1248 7.0561 21 6 3.2034 1.0411 7.3187 22 6 3.6975 1.5415 8.5134 23 6 5.0505 1.4968 8.7841 24 6 5.9221 0.9493 7.8606 25 6 5.4370 0.4453 6.6717 26 6 4.0734 0.4878 6.3959 27 8 3.6329 -0.0224 5.2226 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.1263 -0.7994 -1.2057 32 1 1.6053 -1.7196 -1.2952 33 1 2.9227 -1.8420 -4.7320 34 1 3.1264 -0.7995 1.2055 35 1 1.6055 -1.7198 1.2951 36 1 3.5000 1.0886 2.3244 37 1 2.0491 2.0680 1.9401 38 1 1.3635 2.1567 4.2522 39 1 3.1486 2.2542 4.4042 40 1 2.7237 -1.4500 3.5003 41 1 1.0118 -1.2716 3.9792 42 1 0.3496 0.6108 5.5061 43 1 1.1796 -0.7727 6.2440 44 1 1.4643 2.1597 6.8362 45 1 1.1911 0.8062 7.9502 46 1 3.0190 1.9651 9.2392 47 1 5.4280 1.8890 9.7169 48 1 6.9811 0.9160 8.0700 49 1 6.1182 0.0163 5.9517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877540274.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:48 Heat of formation + Delta-G solvation = -42.124473 kcal Electronic energy + Delta-G solvation = -26455.264879 eV Core-core repulsion = 22959.663077 eV Total energy + Delta-G solvation = -3495.601801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -42.17294 -39.93745 -38.27561 -36.67352 -35.33775 -34.25966 -32.13778 -31.16643 -30.83529 -29.05780 -28.27545 -26.65564 -25.06034 -24.65659 -23.46158 -23.24091 -22.23314 -20.60552 -20.06653 -18.61169 -18.42732 -17.52478 -16.91872 -16.64201 -16.34340 -16.17607 -15.95807 -15.54641 -15.34056 -15.03029 -14.73859 -14.56185 -14.41342 -14.15235 -13.96326 -13.86834 -13.55163 -13.36542 -13.26974 -12.97420 -12.77752 -12.65371 -12.48779 -12.46465 -12.28311 -12.22977 -12.17329 -11.92516 -11.74003 -11.52858 -11.35376 -11.25918 -11.07687 -10.88557 -10.53847 -9.70146 -9.47999 -9.06382 -8.17788 -6.27023 0.38187 0.49824 1.39689 1.40869 1.51988 2.10209 2.41723 2.80312 3.02250 3.15569 3.38705 3.48215 3.60029 3.83619 3.92481 4.06343 4.06803 4.20903 4.26142 4.27265 4.34908 4.37727 4.47002 4.53118 4.61168 4.64552 4.68136 4.74886 4.80273 4.81894 4.87990 4.90590 4.98114 5.00027 5.04995 5.09102 5.09601 5.21534 5.27714 5.41107 5.46507 5.51172 5.54835 5.55697 5.61558 5.73410 5.87092 5.89878 5.95704 5.97584 6.30234 6.65218 6.88796 7.41178 8.94444 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.028715 B = 0.002435 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.872185 B =11496.242872 C =11894.800580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 H 0.051 0.949 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.262 1.262 13 C 0.063 3.937 14 N -0.503 5.503 15 C 0.034 3.966 16 C -0.129 4.129 17 C 0.116 3.884 18 C 0.045 3.955 19 C -0.136 4.136 20 C -0.073 4.073 21 C -0.170 4.170 22 C -0.089 4.089 23 C -0.158 4.158 24 C -0.092 4.092 25 C -0.175 4.175 26 C 0.115 3.885 27 O -0.330 6.330 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.038 0.962 31 H -0.019 1.019 32 H -0.009 1.009 33 H 0.262 0.738 34 H 0.017 0.983 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.147 0.853 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 7.155 28.994 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.186 1.186 13 C -0.065 4.065 14 N -0.226 5.226 15 C -0.094 4.094 16 C -0.167 4.167 17 C 0.077 3.923 18 C -0.083 4.083 19 C -0.173 4.173 20 C -0.110 4.110 21 C -0.171 4.171 22 C -0.107 4.107 23 C -0.176 4.176 24 C -0.109 4.109 25 C -0.194 4.194 26 C 0.070 3.930 27 O -0.244 6.244 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.000 1.000 32 H 0.010 0.990 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.165 0.835 47 H 0.166 0.834 48 H 0.165 0.835 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.826 7.026 28.676 29.536 hybrid contribution 1.180 -0.281 -1.381 1.838 sum 0.354 6.746 27.295 28.119 Atomic orbital electron populations 1.21473 0.94292 1.00526 1.00629 1.20939 0.96948 0.98204 0.92492 0.93089 1.19027 0.93860 0.94822 0.92886 1.21615 1.34363 1.08525 0.91962 0.92027 1.25978 0.95301 0.96109 1.02724 1.70110 1.40373 1.22975 1.24274 0.85491 0.79049 0.78347 0.78450 1.19982 1.20901 1.18584 1.22248 0.96735 0.97352 0.90159 1.64900 1.51918 1.04901 1.00923 1.23240 0.95295 0.93527 0.97314 1.23101 1.03727 0.96122 0.93723 1.22076 0.80898 0.95101 0.94191 1.23023 1.01156 0.95210 0.88897 1.21613 0.99102 1.02016 0.94590 1.20069 0.90533 1.01278 0.99132 1.19993 0.96576 1.04723 0.95839 1.21252 0.96304 0.97593 0.95528 1.21360 0.93350 1.02028 1.00817 1.21207 1.01112 0.96356 0.92266 1.20800 0.92519 1.05946 1.00101 1.18923 0.93221 0.95591 0.85259 1.85391 1.33007 1.70016 1.36028 0.94384 0.91264 0.94326 1.00031 0.99045 0.92958 0.96476 0.91130 0.95343 0.89575 0.87707 0.91011 0.93787 0.87114 0.87537 0.90741 0.89505 0.88135 0.83462 0.83396 0.83492 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.29 8.89 71.98 0.64 -3.65 16 2 C -0.07 -2.81 2.37 -10.79 -0.03 -2.84 16 3 H 0.05 2.17 7.17 -2.38 -0.02 2.16 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -30.25 8.41 25.60 0.22 -30.04 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 9 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 13 C 0.06 2.29 4.10 86.30 0.35 2.64 16 14 N -0.50 -14.75 4.70 -883.04 -4.15 -18.89 16 15 C 0.03 0.95 5.91 86.65 0.51 1.47 16 16 C -0.13 -2.84 5.95 31.80 0.19 -2.65 16 17 C 0.12 2.57 0.98 -10.31 -0.01 2.56 16 18 C 0.04 1.14 6.11 86.44 0.53 1.67 16 19 C -0.14 -2.18 4.43 29.77 0.13 -2.04 16 20 C -0.07 -1.02 5.49 29.26 0.16 -0.86 16 21 C -0.17 -3.16 5.79 -19.90 -0.12 -3.27 16 22 C -0.09 -1.31 9.66 22.32 0.22 -1.09 16 23 C -0.16 -2.23 10.04 22.24 0.22 -2.00 16 24 C -0.09 -1.51 10.04 22.21 0.22 -1.29 16 25 C -0.17 -3.83 9.94 22.43 0.22 -3.61 16 26 C 0.11 2.70 6.32 22.53 0.14 2.85 16 27 O -0.33 -8.79 9.31 -85.63 -0.80 -9.59 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 30 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 31 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 32 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.02 0.67 7.83 -2.39 -0.02 0.65 16 35 H 0.07 2.52 8.08 -2.38 -0.02 2.51 16 36 H 0.03 0.90 7.81 -2.38 -0.02 0.88 16 37 H 0.09 2.42 7.67 -2.39 -0.02 2.40 16 38 H 0.10 1.90 7.66 -2.39 -0.02 1.88 16 39 H 0.07 1.64 7.90 -2.39 -0.02 1.62 16 40 H 0.04 1.26 7.58 -2.39 -0.02 1.24 16 41 H 0.11 2.38 7.65 -2.39 -0.02 2.36 16 42 H 0.11 1.41 7.90 -2.39 -0.02 1.39 16 43 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 44 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 47 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 48 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 49 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -68.30 380.90 2.47 -65.83 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.90 Total: 13.59 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 4.20 Total: -40.10 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -3.86 Total: -76.81 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.80 Total: -9.59 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.30 2.47 -65.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877540274.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.704 kcal (2) G-P(sol) polarization free energy of solvation -68.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds