Wall clock time and date at job start Tue Mar 31 2020 11:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47316 * 2 1 4 4 C 1.53008 * 109.46487 * 119.99387 * 2 1 3 5 5 C 1.50693 * 109.47499 * 295.00086 * 4 2 1 6 6 H 1.08012 * 119.99833 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00543 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99619 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00440 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47472 * 270.00221 * 9 7 5 11 11 H 1.48502 * 109.47366 * 30.00221 * 9 7 5 12 12 H 1.48500 * 109.47175 * 150.00379 * 9 7 5 13 13 C 1.52992 * 109.47410 * 239.99449 * 2 1 3 14 14 N 1.46901 * 109.47331 * 175.03562 * 13 2 1 15 15 C 1.48536 * 110.99961 * 281.84924 * 14 13 2 16 16 C 1.54927 * 103.22523 * 200.27284 * 15 14 13 17 17 C 1.54620 * 102.93441 * 37.39831 * 16 15 14 18 18 C 1.47894 * 111.00332 * 164.45194 * 14 13 2 19 19 C 1.51793 * 109.50743 * 220.09357 * 17 16 15 20 20 C 1.51699 * 112.08312 * 289.42910 * 19 17 16 21 21 C 1.50209 * 112.05277 * 321.30772 * 20 19 17 22 22 C 1.38629 * 118.74723 * 194.52253 * 21 20 19 23 23 C 1.38053 * 120.42684 * 180.28912 * 22 21 20 24 24 C 1.38290 * 119.97724 * 0.02562 * 23 22 21 25 25 C 1.37940 * 119.89985 * 359.86922 * 24 23 22 26 26 C 1.38371 * 121.56504 * 14.57562 * 21 20 19 27 27 O 1.35299 * 121.63390 * 359.14397 * 26 21 20 28 28 H 1.08993 * 109.47452 * 305.45581 * 1 2 3 29 29 H 1.09006 * 109.46592 * 65.45105 * 1 2 3 30 30 H 1.08994 * 109.47386 * 185.44661 * 1 2 3 31 31 H 1.08998 * 109.46806 * 174.99945 * 4 2 1 32 32 H 1.09001 * 109.46949 * 55.00706 * 4 2 1 33 33 H 0.97006 * 119.99749 * 0.02562 * 8 7 5 34 34 H 1.09003 * 109.47086 * 295.03452 * 13 2 1 35 35 H 1.08997 * 109.47173 * 55.03515 * 13 2 1 36 36 H 1.09007 * 110.66579 * 318.70093 * 15 14 13 37 37 H 1.08994 * 110.67361 * 81.83230 * 15 14 13 38 38 H 1.09000 * 110.71978 * 279.03734 * 16 15 14 39 39 H 1.09005 * 110.72450 * 155.75720 * 16 15 14 40 40 H 1.08997 * 109.91983 * 265.22765 * 18 14 13 41 41 H 1.09005 * 109.91740 * 26.51914 * 18 14 13 42 42 H 1.09000 * 108.95896 * 50.09609 * 19 17 16 43 43 H 1.09000 * 108.95484 * 168.84245 * 19 17 16 44 44 H 1.08997 * 108.96633 * 81.97536 * 20 19 17 45 45 H 1.09004 * 108.96146 * 200.73745 * 20 19 17 46 46 H 1.07993 * 119.78383 * 0.27071 * 22 21 20 47 47 H 1.08005 * 120.00803 * 180.02562 * 23 22 21 48 48 H 1.07996 * 120.04863 * 179.88861 * 24 23 22 49 49 H 1.08001 * 119.85280 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6412 0.0572 2.4766 6 1 1.0798 0.9744 2.3756 7 6 1.9921 -0.4020 3.7284 8 7 2.6752 -1.5191 3.8514 9 14 1.4972 0.5625 5.2497 10 1 2.5624 1.5420 5.5830 11 1 0.2261 1.2838 4.9867 12 1 1.3097 -0.3717 6.3887 13 6 2.0401 -0.7213 -1.2491 14 7 3.5042 -0.6184 -1.3105 15 6 3.9237 0.7196 -1.8004 16 6 5.3726 0.4785 -2.2930 17 6 5.2946 -0.9326 -2.9203 18 6 4.0643 -1.5933 -2.2712 19 6 6.5467 -1.7145 -2.5667 20 6 7.7717 -1.1867 -3.2892 21 6 7.4616 -0.7789 -4.7012 22 6 8.5125 -0.5676 -5.5803 23 6 8.2674 -0.1861 -6.8842 24 6 6.9666 -0.0120 -7.3203 25 6 5.9161 -0.2226 -6.4515 26 6 6.1591 -0.6104 -5.1370 27 8 5.1036 -0.8216 -4.3173 28 1 -0.3634 0.5961 0.8370 29 1 -0.3633 0.4270 -0.9348 30 1 -0.3634 -1.0230 0.0975 31 1 3.1262 -0.7994 1.2058 32 1 1.6053 -1.7197 1.2953 33 1 2.9325 -2.0197 3.0614 34 1 1.7512 -1.7715 -1.2056 35 1 1.6060 -0.2615 -2.1369 36 1 3.2869 1.0451 -2.6231 37 1 3.9091 1.4482 -0.9899 38 1 6.0714 0.4906 -1.4566 39 1 5.6535 1.2186 -3.0424 40 1 4.3635 -2.5011 -1.7473 41 1 3.3235 -1.8294 -3.0352 42 1 6.7137 -1.6481 -1.4916 43 1 6.3998 -2.7598 -2.8381 44 1 8.1578 -0.3232 -2.7477 45 1 8.5353 -1.9644 -3.3061 46 1 9.5295 -0.7020 -5.2427 47 1 9.0912 -0.0237 -7.5635 48 1 6.7736 0.2882 -8.3396 49 1 4.9006 -0.0860 -6.7927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877540275.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:55 Heat of formation + Delta-G solvation = -44.725090 kcal Electronic energy + Delta-G solvation = -26730.735885 eV Core-core repulsion = 23235.021312 eV Total energy + Delta-G solvation = -3495.714572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.21594 -39.97517 -38.32775 -36.80299 -35.41475 -34.34262 -32.15723 -31.19093 -30.86666 -28.75793 -28.39586 -26.39594 -25.03967 -24.76006 -23.49479 -23.28648 -22.39777 -20.84170 -20.12131 -18.81486 -18.55216 -17.65837 -16.88657 -16.54216 -16.33099 -15.89658 -15.75324 -15.52322 -15.50940 -15.23781 -14.81080 -14.67855 -14.54876 -14.17971 -14.04950 -13.78960 -13.60828 -13.39935 -13.24860 -13.03615 -12.92808 -12.66047 -12.56605 -12.45363 -12.28613 -12.26075 -11.95879 -11.93297 -11.72107 -11.61383 -11.47531 -11.27742 -11.15293 -10.50330 -10.43146 -9.72278 -9.40069 -9.08848 -8.57923 -6.25420 0.36404 0.48102 1.52486 1.62093 1.78972 2.03872 2.60895 2.78234 2.98151 3.25948 3.33249 3.42808 3.54208 3.79920 3.87236 3.98061 4.00310 4.16129 4.18531 4.21177 4.29287 4.33147 4.42834 4.43126 4.53336 4.59556 4.62434 4.65081 4.68048 4.72923 4.77099 4.81896 4.83871 4.92317 4.96075 5.02161 5.06120 5.11306 5.15707 5.30545 5.38968 5.40628 5.53691 5.55428 5.60004 5.71369 5.82984 5.94982 6.04576 6.15471 6.32821 6.59816 6.72171 7.54935 8.82763 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025145 B = 0.002750 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.261815 B =10180.289983 C =10761.523400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.066 4.066 3 H 0.049 0.951 4 C 0.031 3.969 5 C -0.603 4.603 6 H 0.046 0.954 7 C -0.043 4.043 8 N -0.944 5.944 9 Si 1.115 2.885 10 H -0.275 1.275 11 H -0.270 1.270 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.522 5.522 15 C 0.040 3.960 16 C -0.131 4.131 17 C 0.122 3.878 18 C 0.050 3.950 19 C -0.139 4.139 20 C -0.073 4.073 21 C -0.172 4.172 22 C -0.090 4.090 23 C -0.157 4.157 24 C -0.089 4.089 25 C -0.169 4.169 26 C 0.114 3.886 27 O -0.323 6.323 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.000 1.000 32 H -0.025 1.025 33 H 0.255 0.745 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.144 0.856 47 H 0.149 0.851 48 H 0.152 0.848 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.217 2.731 -23.037 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.006 4.006 5 C -0.641 4.641 6 H 0.064 0.936 7 C -0.240 4.240 8 N -0.582 5.582 9 Si 0.937 3.063 10 H -0.200 1.200 11 H -0.195 1.195 12 H -0.210 1.210 13 C -0.065 4.065 14 N -0.246 5.246 15 C -0.087 4.087 16 C -0.169 4.169 17 C 0.083 3.917 18 C -0.078 4.078 19 C -0.177 4.177 20 C -0.110 4.110 21 C -0.173 4.173 22 C -0.108 4.108 23 C -0.175 4.175 24 C -0.107 4.107 25 C -0.188 4.188 26 C 0.069 3.931 27 O -0.237 6.237 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.018 0.982 32 H -0.007 1.007 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.162 0.838 47 H 0.167 0.833 48 H 0.169 0.831 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.280 2.615 -20.911 23.903 hybrid contribution -0.494 -0.174 -2.054 2.120 sum 10.785 2.441 -22.965 25.489 Atomic orbital electron populations 1.21622 0.94879 1.01024 1.00914 1.20886 0.95417 0.98297 0.93937 0.93251 1.19015 0.94969 0.93509 0.93068 1.22525 1.37633 1.10157 0.93828 0.93552 1.27288 0.94344 0.97367 1.04995 1.70866 1.38239 1.16234 1.32856 0.82962 0.76802 0.74430 0.72080 1.20047 1.19535 1.21045 1.22301 0.86814 1.00441 0.96947 1.64781 1.10756 1.03859 1.45249 1.23200 0.95593 0.91711 0.98241 1.23080 0.97022 0.95994 1.00806 1.21933 0.96173 0.95796 0.77790 1.22927 0.95006 0.96358 0.93530 1.21609 0.93431 1.00109 1.02542 1.20036 0.97768 1.02269 0.90884 1.19945 0.92532 1.06697 0.98155 1.21225 0.98803 0.97464 0.93309 1.21364 0.97538 1.02255 0.96295 1.21238 0.91928 0.97571 0.99970 1.20795 1.01078 1.05277 0.91627 1.18942 0.86371 0.96980 0.90763 1.85345 1.33781 1.86519 1.18066 0.93624 0.91658 0.93903 0.98158 1.00704 0.93585 0.91764 0.93561 0.93384 0.90767 0.89342 0.90197 0.88877 0.92473 0.88978 0.90749 0.89960 0.88331 0.83830 0.83338 0.83068 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.91 71.98 0.64 -4.14 16 2 C -0.07 -2.77 2.42 -10.79 -0.03 -2.80 16 3 H 0.05 2.12 7.48 -2.39 -0.02 2.10 16 4 C 0.03 1.67 3.70 29.85 0.11 1.78 16 5 C -0.60 -35.08 8.48 25.60 0.22 -34.87 16 6 H 0.05 2.63 7.06 -2.90 -0.02 2.61 16 7 C -0.04 -2.58 5.46 84.65 0.46 -2.12 16 8 N -0.94 -60.26 13.65 21.45 0.29 -59.96 16 9 Si 1.12 51.92 29.90 68.60 2.05 53.97 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 C 0.06 2.20 4.14 86.30 0.36 2.56 16 14 N -0.52 -17.73 4.58 -883.06 -4.04 -21.78 16 15 C 0.04 1.22 6.09 86.65 0.53 1.74 16 16 C -0.13 -3.40 5.96 31.80 0.19 -3.21 16 17 C 0.12 3.10 0.98 -10.30 -0.01 3.09 16 18 C 0.05 1.43 6.07 86.45 0.52 1.96 16 19 C -0.14 -3.01 4.43 29.77 0.13 -2.88 16 20 C -0.07 -1.32 5.50 29.27 0.16 -1.16 16 21 C -0.17 -3.54 5.79 -19.89 -0.12 -3.65 16 22 C -0.09 -1.47 9.66 22.32 0.22 -1.25 16 23 C -0.16 -2.26 10.04 22.24 0.22 -2.04 16 24 C -0.09 -1.40 10.04 22.21 0.22 -1.18 16 25 C -0.17 -3.51 9.94 22.43 0.22 -3.29 16 26 C 0.11 2.73 6.35 22.53 0.14 2.87 16 27 O -0.32 -8.68 9.30 -85.47 -0.80 -9.47 16 28 H 0.04 1.86 7.12 -2.39 -0.02 1.84 16 29 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.00 0.00 7.48 -2.39 -0.02 -0.01 16 32 H -0.03 -1.46 8.01 -2.39 -0.02 -1.48 16 33 H 0.25 16.56 7.22 -92.70 -0.67 15.89 16 34 H 0.06 2.27 8.01 -2.39 -0.02 2.25 16 35 H 0.05 1.44 7.70 -2.39 -0.02 1.42 16 36 H 0.05 1.39 7.74 -2.38 -0.02 1.38 16 37 H 0.07 2.42 7.83 -2.39 -0.02 2.40 16 38 H 0.09 2.26 7.66 -2.39 -0.02 2.24 16 39 H 0.08 1.97 7.92 -2.38 -0.02 1.95 16 40 H 0.09 2.66 7.65 -2.39 -0.02 2.64 16 41 H 0.06 1.63 7.58 -2.38 -0.02 1.61 16 42 H 0.09 2.01 7.90 -2.39 -0.02 2.00 16 43 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 48 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 49 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -69.61 379.98 2.71 -66.90 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 1.00 Total: 18.92 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 4.20 Total: -48.58 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -3.75 Total: -81.74 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.80 Total: -9.47 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.05 Total: 53.97 kcal Total: -69.61 2.71 -66.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877540275.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.179 kcal (2) G-P(sol) polarization free energy of solvation -69.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds