Wall clock time and date at job start Tue Mar 31 2020 10:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.50315 * 2 1 4 4 C 1.53094 * 109.54365 * 239.88840 * 2 1 3 5 5 O 1.43020 * 109.25747 * 183.19641 * 4 2 1 6 6 C 1.43014 * 113.73708 * 58.66783 * 5 4 2 7 7 H 1.08998 * 109.54418 * 61.29185 * 6 5 4 8 8 C 1.50702 * 109.50558 * 181.39909 * 6 5 4 9 9 C 1.38234 * 120.00249 * 39.50414 * 8 6 5 10 10 C 1.38230 * 119.99917 * 179.78673 * 9 8 6 11 11 C 1.38233 * 120.00184 * 0.47129 * 10 9 8 12 12 C 1.38232 * 120.00061 * 359.76514 * 11 10 9 13 13 C 1.38237 * 119.99900 * 0.02562 * 12 11 10 14 14 C 1.53100 * 109.26279 * 301.33039 * 6 5 4 15 15 H 1.09001 * 109.50472 * 296.92063 * 14 6 5 16 16 C 1.52996 * 109.51091 * 176.82704 * 14 6 5 17 17 N 1.47015 * 109.50265 * 120.07924 * 2 1 3 18 18 C 1.46892 * 111.00409 * 302.37678 * 17 2 1 19 19 C 1.53001 * 109.47489 * 72.96416 * 18 17 2 20 20 C 1.50698 * 115.54793 * 15.57584 * 19 18 17 21 21 H 1.07998 * 120.00034 * 356.10880 * 20 19 18 22 22 C 1.37882 * 119.99919 * 176.10279 * 20 19 18 23 23 N 1.31511 * 119.99598 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99935 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47111 * 60.00520 * 24 22 20 26 26 H 1.48504 * 109.47016 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47400 * 300.00302 * 24 22 20 28 28 C 1.53006 * 117.49715 * 229.87591 * 19 18 17 29 29 C 1.52998 * 117.50123 * 161.25307 * 19 18 17 30 30 H 1.08995 * 109.47633 * 295.06454 * 1 2 3 31 31 H 1.09003 * 109.46974 * 55.06984 * 1 2 3 32 32 H 1.09008 * 109.46826 * 175.06003 * 1 2 3 33 33 H 1.08999 * 109.50628 * 303.12806 * 4 2 1 34 34 H 1.08993 * 109.50960 * 63.25887 * 4 2 1 35 35 H 1.07999 * 119.99439 * 0.02562 * 9 8 6 36 36 H 1.08005 * 120.00102 * 180.25062 * 10 9 8 37 37 H 1.08001 * 120.00325 * 179.78406 * 11 10 9 38 38 H 1.08000 * 120.00512 * 179.97438 * 12 11 10 39 39 H 1.08007 * 119.99959 * 179.97438 * 13 12 11 40 40 H 1.09003 * 109.47163 * 59.99970 * 16 14 6 41 41 H 1.08993 * 109.47201 * 179.97438 * 16 14 6 42 42 H 1.08999 * 109.47265 * 300.00288 * 16 14 6 43 43 H 1.09003 * 109.47387 * 192.96409 * 18 17 2 44 44 H 1.09002 * 109.47116 * 312.96188 * 18 17 2 45 45 H 0.97007 * 119.99868 * 179.97438 * 23 22 20 46 46 H 1.08997 * 117.50008 * 359.97438 * 28 19 18 47 47 H 1.08993 * 117.50140 * 145.01963 * 28 19 18 48 48 H 1.08995 * 117.49647 * 214.98039 * 29 19 18 49 49 H 1.09004 * 117.49984 * 359.97189 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0422 -0.7238 -1.2480 5 8 3.4704 -0.7857 -1.2047 6 6 3.9828 -1.4563 -0.0501 7 1 3.6325 -2.4884 -0.0424 8 6 5.4893 -1.4364 -0.0839 9 6 6.1562 -0.3050 -0.5153 10 6 7.5381 -0.2853 -0.5420 11 6 8.2530 -1.4003 -0.1466 12 6 7.5862 -2.5335 0.2802 13 6 6.2042 -2.5517 0.3110 14 6 3.4903 -0.7399 1.2101 15 1 3.8855 0.2758 1.2294 16 6 3.9697 -1.4983 2.4494 17 7 2.0209 -0.6946 1.1992 18 6 1.5045 -0.0640 2.4212 19 6 0.0190 -0.3955 2.5777 20 6 -0.4865 -1.5318 1.7267 21 1 0.1729 -2.0103 1.0177 22 6 -1.7907 -1.9607 1.8533 23 7 -2.5937 -1.3778 2.7164 24 14 -2.4171 -3.3697 0.7990 25 1 -1.6112 -4.5872 1.0702 26 1 -3.8415 -3.6359 1.1239 27 1 -2.2967 -3.0059 -0.6358 28 6 -0.9395 0.7663 2.8475 29 6 -0.6012 -0.2220 3.9655 30 1 -0.3634 0.4353 0.9308 31 1 -0.3633 0.5884 -0.8426 32 1 -0.3633 -1.0239 -0.0885 33 1 1.6348 -1.7344 -1.2756 34 1 1.7283 -0.1798 -2.1388 35 1 5.5975 0.5648 -0.8278 36 1 8.0592 0.6001 -0.8753 37 1 9.3327 -1.3862 -0.1708 38 1 8.1447 -3.4048 0.5887 39 1 5.6832 -3.4372 0.6441 40 1 5.0591 -1.5342 2.4546 41 1 3.6191 -0.9875 3.3461 42 1 3.5729 -2.5133 2.4303 43 1 2.0536 -0.4405 3.2843 44 1 1.6304 1.0166 2.3536 45 1 -3.5114 -1.6793 2.8053 46 1 -0.5117 1.7666 2.9140 47 1 -1.9358 0.7088 2.4095 48 1 -1.3751 -0.9296 4.2629 49 1 0.0491 0.1279 4.7673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878095660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:10 Heat of formation + Delta-G solvation = 61.337968 kcal Electronic energy + Delta-G solvation = -28168.453128 eV Core-core repulsion = 24677.337795 eV Total energy + Delta-G solvation = -3491.115333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.25445 -38.83361 -37.20741 -34.90509 -33.68117 -31.61105 -30.93822 -30.81244 -28.67437 -26.99940 -26.52726 -24.61768 -23.81929 -22.57612 -21.56292 -20.91267 -20.41362 -19.44873 -19.02796 -17.09392 -16.28920 -15.87384 -15.68897 -15.42650 -14.91538 -14.70152 -14.55985 -14.15819 -13.74459 -13.49720 -13.38373 -13.10779 -12.98252 -12.73926 -12.41458 -12.13478 -11.87505 -11.76946 -11.31256 -11.21235 -11.12227 -11.04669 -10.97144 -10.72552 -10.58944 -10.46363 -10.33365 -10.13292 -9.79290 -9.49410 -9.42053 -9.30639 -8.93156 -8.70799 -8.37605 -8.24156 -7.82665 -7.48444 -5.85204 -3.77014 1.29159 1.38932 3.33126 3.39357 3.41829 3.68501 4.01625 4.34446 4.46888 4.85507 4.91362 4.96149 5.07976 5.11712 5.14535 5.34693 5.43294 5.49979 5.54427 5.60200 5.72407 5.76717 5.82289 5.87090 5.92583 6.04457 6.06626 6.13574 6.22925 6.28686 6.33985 6.41273 6.43195 6.47541 6.47977 6.57990 6.64655 6.73060 6.78762 6.96408 7.00340 7.16071 7.18413 7.41053 7.44879 7.64316 7.70495 7.89067 8.04270 8.09002 8.28032 8.61280 9.06971 9.63503 11.11145 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.004039 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.320963 B = 6930.321990 C = 7199.765152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.060 3.940 3 H 0.027 0.973 4 C 0.068 3.932 5 O -0.386 6.386 6 C 0.140 3.860 7 H 0.074 0.926 8 C -0.069 4.069 9 C -0.094 4.094 10 C -0.125 4.125 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.107 4.107 14 C 0.057 3.943 15 H 0.037 0.963 16 C -0.144 4.144 17 N -0.504 5.504 18 C 0.096 3.904 19 C 0.028 3.972 20 C -0.434 4.434 21 H 0.085 0.915 22 C 0.043 3.957 23 N -0.889 5.889 24 Si 0.886 3.114 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.198 4.198 29 C -0.190 4.190 30 H 0.113 0.887 31 H 0.012 0.988 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.014 0.986 45 H 0.255 0.745 46 H 0.039 0.961 47 H 0.104 0.896 48 H 0.121 0.879 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.083 0.721 -4.617 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.048 4.048 3 H 0.045 0.955 4 C -0.008 4.008 5 O -0.305 6.305 6 C 0.082 3.918 7 H 0.092 0.908 8 C -0.070 4.070 9 C -0.112 4.112 10 C -0.143 4.143 11 C -0.142 4.142 12 C -0.142 4.142 13 C -0.125 4.125 14 C -0.052 4.052 15 H 0.055 0.945 16 C -0.202 4.202 17 N -0.229 5.229 18 C -0.031 4.031 19 C 0.027 3.973 20 C -0.472 4.472 21 H 0.103 0.897 22 C -0.156 4.156 23 N -0.529 5.529 24 Si 0.715 3.285 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.235 4.235 29 C -0.228 4.228 30 H 0.131 0.869 31 H 0.031 0.969 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.032 0.968 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.122 0.878 48 H 0.139 0.861 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.822 0.290 -4.728 16.516 hybrid contribution -0.336 0.199 -0.238 0.458 sum 15.486 0.489 -4.966 16.270 Atomic orbital electron populations 1.23294 0.91020 1.05587 1.02848 1.22203 0.98729 0.94111 0.89795 0.95473 1.22837 0.79343 1.00832 0.97834 1.87902 1.21681 1.78490 1.42394 1.20905 0.89038 0.96533 0.85372 0.90786 1.19644 0.93988 0.94228 0.99136 1.21026 0.93998 0.98168 0.97985 1.21143 0.94170 0.98433 1.00597 1.21126 0.99650 0.93633 0.99776 1.21072 0.94202 0.98315 1.00577 1.21007 0.94093 0.97691 0.99675 1.22154 0.90079 0.97835 0.95142 0.94495 1.21873 0.99984 1.01474 0.96850 1.62177 1.04479 1.53866 1.02394 1.21766 0.96792 0.93895 0.90695 1.19017 0.87146 0.95596 0.95532 1.20716 0.95148 1.13170 1.18123 0.89737 1.24962 0.97347 0.96937 0.96346 1.69964 1.06156 1.41457 1.35309 0.86741 0.77720 0.83209 0.80861 1.20476 1.21684 1.20355 1.22881 1.03300 0.91040 1.06322 1.23090 1.04665 1.03900 0.91134 0.86913 0.96942 0.87930 0.92124 0.89001 0.85792 0.86267 0.86381 0.86102 0.85826 0.92585 0.91947 0.91394 0.91548 0.96814 0.93402 0.94233 0.87825 0.86085 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.50 7.22 37.16 0.27 -3.24 16 2 C 0.06 1.11 2.43 -67.60 -0.16 0.94 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.07 1.13 6.29 37.21 0.23 1.36 16 5 O -0.39 -6.35 9.78 -35.23 -0.34 -6.70 16 6 C 0.14 2.14 2.51 -27.83 -0.07 2.07 16 7 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 8 C -0.07 -0.94 4.19 -104.62 -0.44 -1.37 16 9 C -0.09 -1.21 9.36 -39.59 -0.37 -1.58 16 10 C -0.13 -1.36 10.05 -39.59 -0.40 -1.76 16 11 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 12 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 13 C -0.11 -1.26 8.75 -39.58 -0.35 -1.60 16 14 C 0.06 0.92 2.06 -67.60 -0.14 0.78 16 15 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 16 C -0.14 -2.11 8.63 37.16 0.32 -1.79 16 17 N -0.50 -9.45 3.10 -218.42 -0.68 -10.13 16 18 C 0.10 1.93 4.93 -3.83 -0.02 1.91 16 19 C 0.03 0.64 1.33 -155.66 -0.21 0.44 16 20 C -0.43 -10.68 4.87 -34.44 -0.17 -10.84 16 21 H 0.08 2.09 5.31 -52.49 -0.28 1.81 16 22 C 0.04 1.10 5.26 -17.82 -0.09 1.00 16 23 N -0.89 -23.74 8.60 55.43 0.48 -23.26 16 24 Si 0.89 20.44 29.42 -169.99 -5.00 15.43 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C -0.20 -4.66 7.54 -26.73 -0.20 -4.86 16 29 C -0.19 -4.56 9.37 -26.73 -0.25 -4.81 16 30 H 0.11 2.54 2.88 -51.93 -0.15 2.39 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 2.29 4.86 -51.92 -0.25 2.04 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.12 1.63 7.77 -52.49 -0.41 1.22 16 36 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.32 8.04 -52.48 -0.42 0.89 16 40 H 0.06 0.72 6.72 -51.93 -0.35 0.37 16 41 H 0.06 0.93 6.06 -51.93 -0.31 0.62 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.29 5.52 -51.93 -0.29 1.00 16 44 H 0.01 0.28 7.81 -51.93 -0.41 -0.13 16 45 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 46 H 0.04 0.87 8.06 -51.93 -0.42 0.45 16 47 H 0.10 2.70 6.62 -51.93 -0.34 2.35 16 48 H 0.12 3.23 5.95 -51.93 -0.31 2.92 16 49 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -26.33 360.16 -10.67 -37.00 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.71 Total: 8.89 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -2.84 Total: -26.67 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: -0.20 Total: -33.39 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.34 Total: -6.70 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.00 Total: 15.43 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -26.33 -10.67 -37.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878095660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.336 kcal (2) G-P(sol) polarization free energy of solvation -26.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds