Wall clock time and date at job start Tue Mar 31 2020 11:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47176 * 2 1 4 4 N 1.46907 * 109.47205 * 119.99659 * 2 1 3 5 5 C 1.46896 * 111.00081 * 209.32962 * 4 2 1 6 6 H 1.09005 * 109.47294 * 320.78548 * 5 4 2 7 7 C 1.52938 * 109.47944 * 80.80458 * 5 4 2 8 8 C 1.52954 * 109.81991 * 182.97626 * 7 5 4 9 9 C 1.53174 * 109.45128 * 297.01482 * 8 7 5 10 10 C 1.53153 * 108.88373 * 56.57149 * 9 8 7 11 11 C 1.52798 * 117.75460 * 160.36462 * 10 9 8 12 12 C 1.52843 * 117.67825 * 91.47663 * 10 9 8 13 13 C 1.53157 * 115.00296 * 306.05936 * 10 9 8 14 14 C 1.50701 * 109.47361 * 239.99857 * 2 1 3 15 15 C 1.38304 * 119.92774 * 279.72904 * 14 2 1 16 16 C 1.38100 * 120.06561 * 179.72493 * 15 14 2 17 17 C 1.38881 * 119.92981 * 0.57048 * 16 15 14 18 18 O 1.35755 * 120.07004 * 179.68509 * 17 16 15 19 19 C 1.34824 * 116.99989 * 174.19848 * 18 17 16 20 20 H 1.07999 * 120.00309 * 5.08893 * 19 18 17 21 21 C 1.38655 * 120.00220 * 185.08591 * 19 18 17 22 22 N 1.31553 * 120.00593 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99574 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46978 * 89.99615 * 23 21 19 25 25 H 1.48498 * 109.46975 * 209.99899 * 23 21 19 26 26 H 1.48494 * 109.47112 * 329.99920 * 23 21 19 27 27 C 1.38884 * 119.86281 * 359.70008 * 17 16 15 28 28 C 1.38104 * 119.92806 * 0.02562 * 27 17 16 29 29 H 1.08992 * 109.47194 * 184.99369 * 1 2 3 30 30 H 1.08999 * 109.47053 * 304.99917 * 1 2 3 31 31 H 1.09008 * 109.46788 * 64.99582 * 1 2 3 32 32 H 1.00906 * 110.99239 * 333.27953 * 4 2 1 33 33 H 1.08992 * 109.41261 * 62.86995 * 7 5 4 34 34 H 1.09005 * 109.41334 * 303.08126 * 7 5 4 35 35 H 1.09004 * 109.47121 * 177.01903 * 8 7 5 36 36 H 1.08994 * 109.47288 * 57.01102 * 8 7 5 37 37 H 1.08999 * 109.56845 * 176.39410 * 9 8 7 38 38 H 1.08995 * 109.56824 * 296.75046 * 9 8 7 39 39 H 1.09005 * 117.50120 * 359.84635 * 11 10 9 40 40 H 1.08999 * 117.50487 * 144.89134 * 11 10 9 41 41 H 1.09003 * 117.50511 * 215.22928 * 12 10 9 42 42 H 1.09004 * 117.50605 * 0.27697 * 12 10 9 43 43 H 1.08996 * 109.56499 * 173.76471 * 13 10 9 44 44 H 1.09001 * 109.56553 * 293.99867 * 13 10 9 45 45 H 1.08000 * 119.96562 * 359.97438 * 15 14 2 46 46 H 1.08000 * 120.03626 * 180.27034 * 16 15 14 47 47 H 0.96993 * 119.99973 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.03434 * 180.02562 * 27 17 16 49 49 H 1.08002 * 119.95988 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3224 -0.1596 1.6201 6 1 3.9314 0.0476 0.7401 7 6 3.1135 1.1323 2.4115 8 6 4.4681 1.7334 2.7899 9 6 5.2168 0.7647 3.7104 10 6 5.3507 -0.5873 3.0034 11 6 6.4277 -1.5485 3.5042 12 6 6.6058 -0.8290 2.1653 13 6 4.0343 -1.1892 2.5029 14 6 2.0324 -0.7104 -1.2304 15 6 2.0714 -2.0926 -1.2616 16 6 2.5259 -2.7466 -2.3897 17 6 2.9552 -2.0148 -3.4893 18 8 3.4085 -2.6548 -4.5974 19 6 3.6960 -1.8911 -5.6707 20 1 3.6411 -0.8150 -5.5981 21 6 4.0621 -2.4873 -6.8678 22 7 4.3430 -1.7423 -7.9149 23 14 4.1563 -4.3488 -6.9936 24 1 2.8373 -4.8837 -7.4171 25 1 5.1876 -4.7257 -7.9934 26 1 4.5189 -4.9166 -5.6702 27 6 2.9200 -0.6269 -3.4528 28 6 2.4590 0.0212 -2.3237 29 1 -0.3633 -1.0237 0.0894 30 1 -0.3633 0.5894 0.8418 31 1 -0.3633 0.4344 -0.9314 32 1 1.3468 -0.6362 1.9494 33 1 2.5480 0.9147 3.3174 34 1 2.5585 1.8452 1.8016 35 1 4.3136 2.6804 3.3073 36 1 5.0548 1.9040 1.8873 37 1 6.2080 1.1618 3.9296 38 1 4.6590 0.6379 4.6381 39 1 7.0473 -1.2198 4.3386 40 1 6.2030 -2.6148 3.4766 41 1 6.4981 -1.4218 1.2570 42 1 7.3424 -0.0268 2.1189 43 1 4.2415 -2.0876 1.9216 44 1 3.4020 -1.4427 3.3537 45 1 1.7424 -2.6610 -0.4042 46 1 2.5521 -3.8260 -2.4152 47 1 4.5988 -2.1595 -8.7524 48 1 3.2527 -0.0551 -4.3064 49 1 2.4318 1.1005 -2.2946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883201701.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:57 Heat of formation + Delta-G solvation = 4.017654 kcal Electronic energy + Delta-G solvation = -26408.278290 eV Core-core repulsion = 22914.677361 eV Total energy + Delta-G solvation = -3493.600928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.86227 -39.10852 -37.54416 -35.93371 -33.97847 -32.34226 -31.51326 -30.16221 -28.55113 -27.85710 -27.26929 -25.27772 -22.66357 -22.55775 -22.35877 -21.89644 -21.04871 -19.87388 -18.70661 -17.77114 -17.17178 -15.91855 -15.62571 -15.37658 -15.10029 -14.58667 -14.46237 -14.11263 -13.79302 -13.74251 -13.64778 -13.42214 -13.26161 -12.78751 -12.74954 -12.50266 -12.25759 -12.16346 -12.10387 -11.89875 -11.63982 -11.48877 -11.30361 -11.14637 -11.10312 -10.95023 -10.71559 -10.63832 -10.51588 -10.42366 -10.11277 -10.05840 -9.66882 -9.32609 -8.81653 -8.31821 -8.14048 -7.21498 -6.37581 -4.03890 2.22890 2.32814 3.24629 3.28243 3.43461 3.60844 4.09234 4.27330 4.52391 4.54949 4.57608 4.70689 4.87082 4.94212 4.95397 4.97416 5.11741 5.14134 5.18528 5.28196 5.35651 5.41988 5.43932 5.49307 5.54046 5.67527 5.69694 5.72605 5.80023 5.81819 5.84151 5.89280 5.93482 5.97929 6.04245 6.05810 6.07465 6.21208 6.23177 6.25499 6.34560 6.44111 6.69063 6.86979 7.07228 7.13803 7.36148 7.48437 7.52328 7.70824 7.86058 8.09828 8.98343 9.62527 10.70396 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.003150 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.562090 B = 8885.481229 C = 9752.120955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.139 3.861 3 H 0.045 0.955 4 N -0.677 5.677 5 C 0.095 3.905 6 H 0.082 0.918 7 C -0.147 4.147 8 C -0.113 4.113 9 C -0.080 4.080 10 C -0.122 4.122 11 C -0.177 4.177 12 C -0.173 4.173 13 C -0.066 4.066 14 C -0.164 4.164 15 C -0.043 4.043 16 C -0.199 4.199 17 C 0.159 3.841 18 O -0.221 6.221 19 C -0.388 4.388 20 H 0.105 0.895 21 C 0.062 3.938 22 N -0.883 5.883 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.223 4.223 28 C -0.073 4.073 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.335 0.665 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.278 0.722 48 H 0.130 0.870 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 4.816 23.472 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.030 3.970 3 H 0.063 0.937 4 N -0.306 5.306 5 C -0.015 4.015 6 H 0.100 0.900 7 C -0.187 4.187 8 C -0.151 4.151 9 C -0.117 4.117 10 C -0.122 4.122 11 C -0.214 4.214 12 C -0.210 4.210 13 C -0.104 4.104 14 C -0.165 4.165 15 C -0.062 4.062 16 C -0.218 4.218 17 C 0.108 3.892 18 O -0.126 6.126 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.521 5.521 23 Si 0.730 3.270 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.184 1.184 27 C -0.242 4.242 28 C -0.092 4.092 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.137 0.863 46 H 0.131 0.869 47 H 0.089 0.911 48 H 0.148 0.852 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.577 4.051 22.813 23.224 hybrid contribution -0.058 0.317 0.003 0.322 sum -1.635 4.367 22.816 23.288 Atomic orbital electron populations 1.21995 0.94856 1.02367 1.01564 1.20173 0.93743 0.94477 0.88610 0.93682 1.60563 1.04310 1.58579 1.07194 1.21529 0.91065 0.91589 0.97347 0.89972 1.22246 0.97577 0.98549 1.00299 1.21439 0.96146 0.97726 0.99771 1.21129 1.00138 0.92753 0.97681 1.21482 0.91100 0.96567 1.03068 1.22965 1.02433 0.98131 0.97851 1.23042 0.99614 1.03208 0.95164 1.21054 0.93060 0.97809 0.98444 1.19218 1.08416 0.93804 0.95080 1.20436 0.96523 0.93544 0.95681 1.20273 1.08800 0.99188 0.93575 1.19152 0.91658 0.90939 0.87490 1.83573 1.72926 1.36672 1.19435 1.20755 1.46702 0.92152 0.86751 0.87746 1.24455 0.95785 1.00139 0.93658 1.69645 1.44707 1.36137 1.01605 0.86190 0.78226 0.83813 0.78727 1.19929 1.20852 1.18373 1.21194 1.08652 0.94326 1.00030 1.20625 0.97469 0.98220 0.92890 0.91742 0.93397 0.91766 0.84686 0.92135 0.92262 0.92248 0.91745 0.92076 0.91770 0.89181 0.88879 0.88523 0.89115 0.91038 0.91888 0.86283 0.86870 0.91144 0.85234 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.11 37.16 0.34 -1.30 16 2 C 0.14 1.73 2.60 -68.86 -0.18 1.55 16 3 H 0.05 0.56 6.66 -51.93 -0.35 0.22 16 4 N -0.68 -7.47 5.29 -100.89 -0.53 -8.00 16 5 C 0.09 1.02 2.30 -67.65 -0.16 0.86 16 6 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 7 C -0.15 -1.33 5.07 -26.79 -0.14 -1.46 16 8 C -0.11 -0.97 5.93 -26.66 -0.16 -1.13 16 9 C -0.08 -0.66 5.67 -26.56 -0.15 -0.81 16 10 C -0.12 -1.15 1.97 -154.53 -0.31 -1.45 16 11 C -0.18 -1.59 9.99 -26.82 -0.27 -1.86 16 12 C -0.17 -1.75 9.93 -26.79 -0.27 -2.02 16 13 C -0.07 -0.67 5.28 -26.56 -0.14 -0.81 16 14 C -0.16 -2.67 4.82 -104.58 -0.50 -3.18 16 15 C -0.04 -0.75 9.32 -39.61 -0.37 -1.12 16 16 C -0.20 -4.04 9.99 -39.39 -0.39 -4.44 16 17 C 0.16 3.75 6.65 -39.10 -0.26 3.49 16 18 O -0.22 -5.94 8.59 0.05 0.00 -5.94 16 19 C -0.39 -11.11 9.95 30.89 0.31 -10.80 16 20 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 21 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 22 N -0.88 -25.83 13.96 55.48 0.77 -25.05 16 23 Si 0.90 22.02 28.62 -169.99 -4.86 17.16 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 27 C -0.22 -4.87 9.17 -39.39 -0.36 -5.24 16 28 C -0.07 -1.33 9.66 -39.61 -0.38 -1.71 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.33 3.13 8.11 -39.29 -0.32 2.81 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.56 7.13 -51.93 -0.37 0.19 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.85 8.09 -51.93 -0.42 0.42 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.12 1.85 7.70 -52.49 -0.40 1.44 16 46 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 47 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.13 3.00 5.64 -52.49 -0.30 2.70 16 49 H 0.10 1.65 8.03 -52.49 -0.42 1.23 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -28.99 387.50 -10.58 -39.58 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.32 Total: 6.17 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -3.48 Total: -29.75 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.24 Total: -33.05 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: 0.00 Total: -5.94 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.86 Total: 17.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.99 -10.58 -39.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883201701.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.593 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds