Wall clock time and date at job start Tue Mar 31 2020 11:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47176 * 2 1 4 4 N 1.46907 * 109.47205 * 119.99659 * 2 1 3 5 5 C 1.46896 * 111.00081 * 209.32962 * 4 2 1 6 6 H 1.09005 * 109.47294 * 320.78548 * 5 4 2 7 7 C 1.52938 * 109.47944 * 80.80458 * 5 4 2 8 8 C 1.52954 * 109.81991 * 182.97626 * 7 5 4 9 9 C 1.53174 * 109.45128 * 297.01482 * 8 7 5 10 10 C 1.53153 * 108.88373 * 56.57149 * 9 8 7 11 11 C 1.52798 * 117.75460 * 160.36462 * 10 9 8 12 12 C 1.52843 * 117.67825 * 91.47663 * 10 9 8 13 13 C 1.53157 * 115.00296 * 306.05936 * 10 9 8 14 14 C 1.50701 * 109.47361 * 239.99857 * 2 1 3 15 15 C 1.38304 * 119.92774 * 279.72904 * 14 2 1 16 16 C 1.38100 * 120.06561 * 179.72493 * 15 14 2 17 17 C 1.38881 * 119.92981 * 0.57048 * 16 15 14 18 18 O 1.35755 * 120.07004 * 179.68509 * 17 16 15 19 19 C 1.34824 * 116.99989 * 174.19848 * 18 17 16 20 20 H 1.07999 * 120.00309 * 5.08893 * 19 18 17 21 21 C 1.38655 * 120.00220 * 185.08591 * 19 18 17 22 22 N 1.31553 * 120.00593 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99574 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46978 * 89.99615 * 23 21 19 25 25 H 1.48498 * 109.46975 * 209.99899 * 23 21 19 26 26 H 1.48494 * 109.47112 * 329.99920 * 23 21 19 27 27 C 1.38884 * 119.86281 * 359.70008 * 17 16 15 28 28 C 1.38104 * 119.92806 * 0.02562 * 27 17 16 29 29 H 1.08992 * 109.47194 * 184.99369 * 1 2 3 30 30 H 1.08999 * 109.47053 * 304.99917 * 1 2 3 31 31 H 1.09008 * 109.46788 * 64.99582 * 1 2 3 32 32 H 1.00906 * 110.99239 * 333.27953 * 4 2 1 33 33 H 1.08992 * 109.41261 * 62.86995 * 7 5 4 34 34 H 1.09005 * 109.41334 * 303.08126 * 7 5 4 35 35 H 1.09004 * 109.47121 * 177.01903 * 8 7 5 36 36 H 1.08994 * 109.47288 * 57.01102 * 8 7 5 37 37 H 1.08999 * 109.56845 * 176.39410 * 9 8 7 38 38 H 1.08995 * 109.56824 * 296.75046 * 9 8 7 39 39 H 1.09005 * 117.50120 * 359.84635 * 11 10 9 40 40 H 1.08999 * 117.50487 * 144.89134 * 11 10 9 41 41 H 1.09003 * 117.50511 * 215.22928 * 12 10 9 42 42 H 1.09004 * 117.50605 * 0.27697 * 12 10 9 43 43 H 1.08996 * 109.56499 * 173.76471 * 13 10 9 44 44 H 1.09001 * 109.56553 * 293.99867 * 13 10 9 45 45 H 1.08000 * 119.96562 * 359.97438 * 15 14 2 46 46 H 1.08000 * 120.03626 * 180.27034 * 16 15 14 47 47 H 0.96993 * 119.99973 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.03434 * 180.02562 * 27 17 16 49 49 H 1.08002 * 119.95988 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3224 -0.1596 1.6201 6 1 3.9314 0.0476 0.7401 7 6 3.1135 1.1323 2.4115 8 6 4.4681 1.7334 2.7899 9 6 5.2168 0.7647 3.7104 10 6 5.3507 -0.5873 3.0034 11 6 6.4277 -1.5485 3.5042 12 6 6.6058 -0.8290 2.1653 13 6 4.0343 -1.1892 2.5029 14 6 2.0324 -0.7104 -1.2304 15 6 2.0714 -2.0926 -1.2616 16 6 2.5259 -2.7466 -2.3897 17 6 2.9552 -2.0148 -3.4893 18 8 3.4085 -2.6548 -4.5974 19 6 3.6960 -1.8911 -5.6707 20 1 3.6411 -0.8150 -5.5981 21 6 4.0621 -2.4873 -6.8678 22 7 4.3430 -1.7423 -7.9149 23 14 4.1563 -4.3488 -6.9936 24 1 2.8373 -4.8837 -7.4171 25 1 5.1876 -4.7257 -7.9934 26 1 4.5189 -4.9166 -5.6702 27 6 2.9200 -0.6269 -3.4528 28 6 2.4590 0.0212 -2.3237 29 1 -0.3633 -1.0237 0.0894 30 1 -0.3633 0.5894 0.8418 31 1 -0.3633 0.4344 -0.9314 32 1 1.3468 -0.6362 1.9494 33 1 2.5480 0.9147 3.3174 34 1 2.5585 1.8452 1.8016 35 1 4.3136 2.6804 3.3073 36 1 5.0548 1.9040 1.8873 37 1 6.2080 1.1618 3.9296 38 1 4.6590 0.6379 4.6381 39 1 7.0473 -1.2198 4.3386 40 1 6.2030 -2.6148 3.4766 41 1 6.4981 -1.4218 1.2570 42 1 7.3424 -0.0268 2.1189 43 1 4.2415 -2.0876 1.9216 44 1 3.4020 -1.4427 3.3537 45 1 1.7424 -2.6610 -0.4042 46 1 2.5521 -3.8260 -2.4152 47 1 4.5988 -2.1595 -8.7524 48 1 3.2527 -0.0551 -4.3064 49 1 2.4318 1.1005 -2.2946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883201701.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:56 Heat of formation + Delta-G solvation = -10.480112 kcal Electronic energy + Delta-G solvation = -26408.906960 eV Core-core repulsion = 22914.677361 eV Total energy + Delta-G solvation = -3494.229599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02102 -40.45465 -38.94214 -37.16520 -34.94774 -34.38241 -32.47611 -31.76672 -29.94929 -28.80339 -28.01912 -27.25274 -23.90320 -23.68146 -23.39375 -23.02543 -21.90475 -21.27765 -19.75613 -19.45394 -19.04147 -16.81701 -16.74779 -16.62633 -16.32386 -15.90918 -15.68863 -15.49075 -15.31545 -15.19437 -14.89551 -14.40222 -14.33154 -14.11196 -14.03411 -13.87866 -13.72284 -13.48133 -13.06906 -13.01839 -12.74979 -12.63385 -12.41252 -12.38500 -12.12794 -12.02865 -11.97539 -11.89828 -11.78892 -11.69113 -11.30770 -11.22924 -10.89274 -10.81669 -10.43014 -9.75318 -9.22697 -8.92436 -8.50316 -6.22477 0.61310 0.70803 1.29903 1.34434 1.51047 2.27708 2.76820 2.84591 3.07575 3.17180 3.26071 3.77553 3.83683 3.93125 4.03063 4.10469 4.11378 4.19495 4.23617 4.26563 4.38875 4.42606 4.45083 4.53156 4.64006 4.65279 4.74929 4.76655 4.80305 4.91816 4.96391 4.98385 5.05003 5.06791 5.08222 5.08981 5.20944 5.26716 5.28164 5.30106 5.32723 5.39235 5.43259 5.48699 5.55227 5.63405 5.78628 5.82337 5.93491 6.25344 6.30075 6.69910 6.84416 7.60581 8.61625 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.003150 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.562090 B = 8885.481229 C = 9752.120955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.143 3.857 3 H 0.052 0.948 4 N -0.679 5.679 5 C 0.099 3.901 6 H 0.049 0.951 7 C -0.140 4.140 8 C -0.113 4.113 9 C -0.076 4.076 10 C -0.121 4.121 11 C -0.167 4.167 12 C -0.191 4.191 13 C -0.062 4.062 14 C -0.136 4.136 15 C -0.037 4.037 16 C -0.198 4.198 17 C 0.117 3.883 18 O -0.248 6.248 19 C -0.399 4.399 20 H 0.079 0.921 21 C 0.009 3.991 22 N -0.925 5.925 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.266 1.266 26 H -0.265 1.265 27 C -0.238 4.238 28 C -0.076 4.076 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.352 0.648 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.148 0.852 46 H 0.123 0.877 47 H 0.284 0.716 48 H 0.104 0.896 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 4.748 27.448 28.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.033 3.967 3 H 0.070 0.930 4 N -0.310 5.310 5 C -0.011 4.011 6 H 0.068 0.932 7 C -0.180 4.180 8 C -0.151 4.151 9 C -0.114 4.114 10 C -0.121 4.121 11 C -0.204 4.204 12 C -0.228 4.228 13 C -0.100 4.100 14 C -0.138 4.138 15 C -0.055 4.055 16 C -0.217 4.217 17 C 0.069 3.931 18 O -0.156 6.156 19 C -0.475 4.475 20 H 0.096 0.904 21 C -0.189 4.189 22 N -0.566 5.566 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.191 1.191 26 H -0.189 1.189 27 C -0.257 4.257 28 C -0.095 4.095 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.173 0.827 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.166 0.834 46 H 0.141 0.859 47 H 0.094 0.906 48 H 0.122 0.878 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.043 3.999 26.839 27.305 hybrid contribution 0.306 0.486 -0.928 1.092 sum -2.737 4.485 25.910 26.438 Atomic orbital electron populations 1.21950 0.92878 1.02991 1.02519 1.20131 0.95057 0.94159 0.87327 0.93015 1.60410 1.04791 1.58439 1.07350 1.21424 0.90384 0.92844 0.96441 0.93236 1.22167 0.97952 0.97243 1.00590 1.21440 0.95763 0.98542 0.99346 1.21137 1.00702 0.91672 0.97845 1.21553 0.90434 0.97460 1.02670 1.23023 1.02060 0.98050 0.97277 1.23013 1.00874 1.03768 0.95140 1.20998 0.93670 0.96832 0.98498 1.19784 1.04459 0.93722 0.95815 1.20774 0.95240 0.94165 0.95329 1.20568 1.08034 0.99844 0.93293 1.19655 0.93799 0.91979 0.87696 1.83512 1.75517 1.36664 1.19924 1.20697 1.47262 0.91463 0.88070 0.90384 1.25275 0.95558 1.04887 0.93151 1.69727 1.46528 1.38033 1.02316 0.85218 0.78908 0.77988 0.78595 1.18968 1.19077 1.18910 1.21195 1.09745 0.94019 1.00757 1.20901 0.96783 0.99681 0.92127 0.91677 0.90452 0.92564 0.82732 0.90417 0.92320 0.90756 0.93380 0.91549 0.90414 0.87695 0.88953 0.90629 0.88765 0.93116 0.90440 0.83397 0.85945 0.90595 0.87808 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.11 71.98 0.66 -1.93 16 2 C 0.14 3.08 2.60 44.17 0.11 3.20 16 3 H 0.05 1.11 6.66 -2.39 -0.02 1.09 16 4 N -0.68 -12.54 5.29 -473.10 -2.50 -15.04 16 5 C 0.10 1.88 2.30 44.96 0.10 1.99 16 6 H 0.05 1.28 7.84 -2.38 -0.02 1.26 16 7 C -0.14 -2.05 5.07 30.56 0.16 -1.89 16 8 C -0.11 -1.63 5.93 30.64 0.18 -1.45 16 9 C -0.08 -1.05 5.67 30.70 0.17 -0.87 16 10 C -0.12 -2.06 1.97 -52.20 -0.10 -2.16 16 11 C -0.17 -2.72 9.99 30.54 0.31 -2.42 16 12 C -0.19 -3.80 9.93 30.55 0.30 -3.49 16 13 C -0.06 -1.14 5.28 30.71 0.16 -0.97 16 14 C -0.14 -4.19 4.82 -19.84 -0.10 -4.29 16 15 C -0.04 -1.21 9.32 22.25 0.21 -1.00 16 16 C -0.20 -8.03 9.99 22.39 0.22 -7.80 16 17 C 0.12 5.74 6.65 22.58 0.15 5.89 16 18 O -0.25 -14.05 8.59 -22.73 -0.20 -14.24 16 19 C -0.40 -24.29 9.95 67.92 0.68 -23.61 16 20 H 0.08 4.99 5.44 -2.91 -0.02 4.98 16 21 C 0.01 0.55 5.49 84.83 0.47 1.02 16 22 N -0.92 -56.51 13.96 21.61 0.30 -56.21 16 23 Si 0.97 46.73 28.62 68.60 1.96 48.69 16 24 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 26 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 27 C -0.24 -10.93 9.17 22.39 0.21 -10.73 16 28 C -0.08 -2.76 9.66 22.25 0.21 -2.54 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.35 4.88 8.11 -89.69 -0.73 4.16 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.89 7.13 -2.38 -0.02 0.87 16 35 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 1.40 8.14 -2.38 -0.02 1.39 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.05 1.14 8.09 -2.39 -0.02 1.12 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.15 4.06 7.70 -2.91 -0.02 4.04 16 46 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 47 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 48 H 0.10 5.26 5.64 -2.91 -0.02 5.24 16 49 H 0.13 3.95 8.03 -2.91 -0.02 3.93 16 Total: -1.00 -66.97 387.50 3.87 -63.10 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.20 Total: 26.76 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 4.10 Total: -53.07 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -2.20 Total: -71.25 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.20 Total: -14.24 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.96 Total: 48.69 kcal Total: -66.97 3.87 -63.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883201701.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.625 kcal (2) G-P(sol) polarization free energy of solvation -66.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds