Wall clock time and date at job start Tue Mar 31 2020 11:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 N 1.46896 * 109.46778 * 240.00151 * 2 1 3 5 5 C 1.46904 * 111.00247 * 85.00048 * 4 2 1 6 6 C 1.52996 * 109.47634 * 179.97438 * 5 4 2 7 7 C 1.53000 * 115.55386 * 179.91267 * 6 5 4 8 8 C 1.53002 * 109.46678 * 325.58810 * 7 6 5 9 9 C 1.53005 * 117.49308 * 243.61969 * 8 7 6 10 10 C 1.53005 * 117.49356 * 175.00086 * 8 7 6 11 11 C 1.53009 * 117.49575 * 34.20485 * 6 5 4 12 12 C 1.53002 * 59.99875 * 252.51342 * 11 6 5 13 13 C 1.50696 * 109.47227 * 120.00317 * 2 1 3 14 14 C 1.38303 * 119.93100 * 79.72292 * 13 2 1 15 15 C 1.38104 * 120.07082 * 179.72589 * 14 13 2 16 16 C 1.38878 * 119.92802 * 0.52613 * 15 14 13 17 17 O 1.35748 * 120.07218 * 179.72826 * 16 15 14 18 18 C 1.34831 * 117.00387 * 174.48744 * 17 16 15 19 19 H 1.07997 * 119.99713 * 5.05700 * 18 17 16 20 20 C 1.38651 * 119.99721 * 185.05790 * 18 17 16 21 21 N 1.31552 * 120.00275 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99485 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47201 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47246 * 120.00088 * 22 20 18 25 25 H 1.48504 * 109.46603 * 239.99544 * 22 20 18 26 26 C 1.38882 * 119.86216 * 359.74971 * 16 15 14 27 27 C 1.38105 * 119.93012 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47375 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47325 * 299.99703 * 1 2 3 30 30 H 1.08998 * 109.47511 * 59.99625 * 1 2 3 31 31 H 1.00903 * 111.00380 * 321.04938 * 4 2 1 32 32 H 1.08995 * 109.46843 * 300.00193 * 5 4 2 33 33 H 1.09003 * 109.46855 * 59.99412 * 5 4 2 34 34 H 1.08997 * 109.47063 * 85.58095 * 7 6 5 35 35 H 1.08999 * 109.47085 * 205.58345 * 7 6 5 36 36 H 1.08995 * 115.55551 * 29.32601 * 8 7 6 37 37 H 1.08998 * 117.50157 * 359.97438 * 9 8 7 38 38 H 1.08996 * 117.50188 * 145.02351 * 9 8 7 39 39 H 1.09004 * 117.49065 * 214.97216 * 10 8 7 40 40 H 1.08995 * 117.50197 * 359.97438 * 10 8 7 41 41 H 1.09001 * 117.49951 * 0.02562 * 11 6 5 42 42 H 1.09002 * 117.49475 * 145.01911 * 11 6 5 43 43 H 1.09009 * 117.49605 * 252.51328 * 12 11 6 44 44 H 1.08999 * 117.49905 * 107.49244 * 12 11 6 45 45 H 1.08001 * 119.96727 * 359.97438 * 14 13 2 46 46 H 1.07995 * 120.03685 * 180.27457 * 15 14 13 47 47 H 0.97001 * 120.00067 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.03281 * 179.97438 * 26 16 15 49 49 H 1.08000 * 119.96173 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0823 0.2226 -2.3469 6 6 2.5960 -0.5327 -3.5743 7 6 2.7143 0.2940 -4.8563 8 6 1.5893 1.3300 -4.9005 9 6 0.5646 1.2122 -6.0306 10 6 1.6015 2.3371 -6.0523 11 6 2.1991 -2.0036 -3.7157 12 6 3.6357 -1.6313 -3.3436 13 6 2.0323 -0.7105 1.2304 14 6 2.0608 -2.0927 1.2658 15 6 2.5259 -2.7467 2.3897 16 6 2.9551 -2.0150 3.4893 17 8 3.4076 -2.6549 4.5977 18 6 3.9151 -1.8875 5.5833 19 1 3.8735 -0.8112 5.5053 20 6 4.4903 -2.4803 6.6970 21 7 4.5405 -3.7914 6.7921 22 14 5.1926 -1.4170 8.0629 23 1 5.0126 0.0158 7.7171 24 1 4.4845 -1.7127 9.3342 25 1 6.6398 -1.7092 8.2229 26 6 2.9199 -0.6271 3.4528 27 6 2.4591 0.0211 2.3237 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.4494 -1.4979 -1.4101 32 1 1.0870 0.6164 -2.5525 33 1 2.7587 1.0463 -2.1182 34 1 3.6779 0.8031 -4.8726 35 1 2.6364 -0.3643 -5.7215 36 1 1.2324 1.6782 -3.9313 37 1 0.6921 0.3969 -6.7427 38 1 -0.4669 1.4827 -5.8049 39 1 1.2520 3.3477 -5.8408 40 1 2.4110 2.2618 -6.7782 41 1 1.5716 -2.4330 -2.9346 42 1 2.0220 -2.3825 -4.7223 43 1 4.4038 -1.7653 -4.1054 44 1 3.9537 -1.8158 -2.3175 45 1 1.7227 -2.6613 0.4121 46 1 2.5520 -3.8261 2.4151 47 1 4.9425 -4.2061 7.5714 48 1 3.2526 -0.0553 4.3065 49 1 2.4311 1.1003 2.2949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883253178.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:25 Heat of formation + Delta-G solvation = 42.843028 kcal Electronic energy + Delta-G solvation = -25564.258348 eV Core-core repulsion = 22072.341014 eV Total energy + Delta-G solvation = -3491.917334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.58744 -38.94243 -37.45745 -36.68426 -34.94399 -32.23585 -30.55757 -30.07134 -29.13322 -27.86215 -25.44571 -25.22869 -22.74738 -22.63827 -22.30567 -21.76057 -21.20713 -20.04079 -18.85850 -17.87711 -17.00638 -16.30720 -16.04600 -15.19485 -14.85428 -14.60661 -14.43679 -14.27436 -14.09838 -13.72471 -13.57373 -13.48161 -13.35364 -12.86342 -12.73533 -12.48579 -12.36702 -12.08452 -11.86337 -11.79073 -11.65863 -11.55765 -11.47101 -11.25268 -11.14017 -10.69342 -10.66076 -10.51257 -10.43926 -10.38117 -10.30115 -10.04412 -9.65145 -9.27144 -8.78744 -8.26602 -8.08989 -7.08859 -6.40783 -3.99381 2.29579 2.39477 3.14422 3.16089 3.21495 3.47040 3.72319 4.00066 4.15920 4.26806 4.58249 4.63838 4.66226 4.72714 4.89886 4.95754 5.01146 5.09916 5.13681 5.18851 5.31699 5.33611 5.37599 5.43930 5.53306 5.54872 5.59138 5.63454 5.68659 5.73077 5.79287 5.80863 5.86445 5.92745 5.94439 5.98623 6.04009 6.05672 6.17706 6.28858 6.30943 6.49098 6.77547 6.92359 7.08279 7.13612 7.36327 7.44515 7.48871 7.51768 7.89984 8.04761 9.05277 9.76967 10.77600 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026799 B = 0.002248 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.554138 B =12454.707944 C =12690.607779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.142 3.858 3 H 0.075 0.925 4 N -0.679 5.679 5 C 0.096 3.904 6 C -0.124 4.124 7 C -0.048 4.048 8 C -0.152 4.152 9 C -0.181 4.181 10 C -0.185 4.185 11 C -0.176 4.176 12 C -0.159 4.159 13 C -0.165 4.165 14 C -0.053 4.053 15 C -0.194 4.194 16 C 0.153 3.847 17 O -0.181 6.181 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.233 4.233 27 C -0.068 4.068 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.338 0.662 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.114 0.886 47 H 0.268 0.732 48 H 0.125 0.875 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 9.361 -22.456 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.032 3.968 3 H 0.093 0.907 4 N -0.311 5.311 5 C -0.033 4.033 6 C -0.125 4.125 7 C -0.086 4.086 8 C -0.170 4.170 9 C -0.218 4.218 10 C -0.222 4.222 11 C -0.213 4.213 12 C -0.196 4.196 13 C -0.166 4.166 14 C -0.072 4.072 15 C -0.213 4.213 16 C 0.099 3.901 17 O -0.084 6.084 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.252 4.252 27 C -0.087 4.087 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.158 0.842 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.130 0.870 45 H 0.125 0.875 46 H 0.132 0.868 47 H 0.078 0.922 48 H 0.143 0.857 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.808 9.031 -22.057 24.532 hybrid contribution -0.620 0.662 0.480 1.026 sum -6.428 9.693 -21.577 24.512 Atomic orbital electron populations 1.22494 0.97374 1.02098 1.01489 1.20163 0.91695 0.96716 0.88186 0.90727 1.60645 1.57793 1.09485 1.03156 1.21434 0.98724 0.94866 0.88320 1.21435 1.05340 0.89964 0.95732 1.20671 0.97213 0.95442 0.95251 1.22484 0.99694 1.00229 0.94575 1.23005 0.95579 1.01194 1.02016 1.22968 1.02147 0.95080 1.01997 1.23029 0.99277 0.97057 1.01973 1.23026 0.91560 1.01448 1.03532 1.19060 1.09014 0.93513 0.95032 1.20289 0.97657 0.93390 0.95823 1.20205 1.08837 0.99293 0.93007 1.19384 0.92151 0.90914 0.87601 1.83978 1.67568 1.35040 1.21864 1.21355 1.37810 0.90694 0.96750 0.89108 1.25277 0.96849 0.96304 0.98193 1.70048 1.41936 1.08689 1.29278 0.85661 0.78696 0.79268 0.79870 1.19150 1.20212 1.20180 1.21107 1.09681 0.94413 1.00025 1.20535 0.97322 0.98046 0.92811 0.92442 0.91885 0.93456 0.84203 0.94756 0.90769 0.91167 0.91723 0.87207 0.88989 0.89109 0.88984 0.88962 0.88965 0.89475 0.89719 0.86984 0.87507 0.86772 0.92159 0.85726 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.14 37.16 0.34 -1.66 16 2 C 0.14 1.83 2.79 -68.87 -0.19 1.64 16 3 H 0.07 0.95 7.66 -51.93 -0.40 0.56 16 4 N -0.68 -7.93 4.62 -107.96 -0.50 -8.43 16 5 C 0.10 0.95 4.63 -3.82 -0.02 0.94 16 6 C -0.12 -1.14 2.47 -154.50 -0.38 -1.52 16 7 C -0.05 -0.38 5.68 -26.73 -0.15 -0.53 16 8 C -0.15 -1.16 5.42 -90.61 -0.49 -1.65 16 9 C -0.18 -1.27 10.18 -26.73 -0.27 -1.54 16 10 C -0.18 -1.27 10.25 -26.73 -0.27 -1.54 16 11 C -0.18 -1.60 9.53 -26.73 -0.25 -1.86 16 12 C -0.16 -1.59 9.64 -26.73 -0.26 -1.85 16 13 C -0.16 -2.77 4.96 -104.58 -0.52 -3.28 16 14 C -0.05 -0.94 9.31 -39.61 -0.37 -1.31 16 15 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 16 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 17 O -0.18 -5.24 9.76 0.05 0.00 -5.24 16 18 C -0.39 -11.04 9.49 30.88 0.29 -10.75 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 21 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 22 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 C -0.23 -5.12 9.17 -39.39 -0.36 -5.49 16 27 C -0.07 -1.26 9.66 -39.61 -0.38 -1.64 16 28 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.47 7.45 -51.93 -0.39 0.08 16 31 H 0.34 3.75 5.70 -39.29 -0.22 3.53 16 32 H 0.03 0.32 5.75 -51.93 -0.30 0.03 16 33 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.49 7.63 -51.93 -0.40 0.09 16 36 H 0.11 0.88 5.67 -51.93 -0.29 0.59 16 37 H 0.09 0.61 8.03 -51.93 -0.42 0.20 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.86 6.34 -51.93 -0.33 0.53 16 42 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 43 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 44 H 0.11 1.36 7.59 -51.93 -0.39 0.96 16 45 H 0.11 1.63 7.25 -52.49 -0.38 1.25 16 46 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 49 H 0.10 1.63 8.03 -52.49 -0.42 1.20 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -29.98 390.77 -10.78 -40.76 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.86 Total: 8.32 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: -4.04 Total: -32.17 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.26 Total: -33.32 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.98 -10.78 -40.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883253178.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.605 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds