Wall clock time and date at job start Tue Mar 31 2020 11:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 N 1.46898 * 109.47236 * 239.99675 * 2 1 3 5 5 C 1.46905 * 111.00046 * 85.00078 * 4 2 1 6 6 C 1.52997 * 109.47291 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46901 * 180.02562 * 6 5 4 8 8 H 1.09000 * 115.55102 * 29.32709 * 7 6 5 9 9 C 1.52999 * 117.49495 * 243.61726 * 7 6 5 10 10 C 1.53002 * 60.00175 * 252.50951 * 9 7 6 11 11 H 1.09003 * 117.51437 * 107.47771 * 10 9 7 12 12 C 1.52992 * 117.50454 * 252.51230 * 10 9 7 13 13 C 1.52999 * 117.50281 * 197.24545 * 12 10 9 14 14 C 1.52995 * 117.50138 * 128.61964 * 12 10 9 15 15 C 1.50701 * 109.46816 * 120.00173 * 2 1 3 16 16 C 1.38302 * 119.92694 * 259.99698 * 15 2 1 17 17 C 1.38105 * 120.06653 * 179.97438 * 16 15 2 18 18 C 1.38871 * 119.93200 * 0.02562 * 17 16 15 19 19 O 1.35753 * 120.07178 * 180.02562 * 18 17 16 20 20 C 1.34831 * 116.99766 * 354.46580 * 19 18 17 21 21 H 1.08005 * 119.99910 * 5.05947 * 20 19 18 22 22 C 1.38653 * 120.00325 * 185.05796 * 20 19 18 23 23 N 1.31555 * 119.99726 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00359 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47111 * 59.99485 * 24 22 20 26 26 H 1.48495 * 109.47007 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47035 * 299.99958 * 24 22 20 28 28 C 1.38880 * 119.86456 * 0.27348 * 18 17 16 29 29 C 1.38102 * 119.92802 * 359.44993 * 28 18 17 30 30 H 1.08993 * 109.47007 * 300.00307 * 1 2 3 31 31 H 1.08999 * 109.46703 * 60.00178 * 1 2 3 32 32 H 1.09006 * 109.47198 * 179.97438 * 1 2 3 33 33 H 1.00905 * 111.00248 * 321.04901 * 4 2 1 34 34 H 1.09001 * 109.47260 * 300.00366 * 5 4 2 35 35 H 1.09006 * 109.46745 * 59.99876 * 5 4 2 36 36 H 1.09001 * 109.46699 * 299.99865 * 6 5 4 37 37 H 1.08997 * 109.47300 * 60.00189 * 6 5 4 38 38 H 1.08993 * 117.50272 * 0.02562 * 9 7 6 39 39 H 1.09003 * 117.49351 * 145.02306 * 9 7 6 40 40 H 1.09007 * 115.54682 * 342.95015 * 12 10 9 41 41 H 1.09002 * 117.49639 * 359.97438 * 13 12 10 42 42 H 1.08993 * 117.49982 * 145.01827 * 13 12 10 43 43 H 1.09006 * 117.50060 * 214.98079 * 14 12 10 44 44 H 1.08998 * 117.49669 * 0.02562 * 14 12 10 45 45 H 1.08001 * 119.96717 * 0.02562 * 16 15 2 46 46 H 1.07996 * 120.03107 * 180.02562 * 17 16 15 47 47 H 0.97003 * 120.00171 * 179.97438 * 23 22 20 48 48 H 1.08001 * 120.03810 * 179.72208 * 28 18 17 49 49 H 1.07996 * 119.96803 * 180.27492 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5951 -0.5333 -3.5744 7 6 2.6611 0.4200 -4.7694 8 1 2.8423 1.4669 -4.5262 9 6 1.7546 0.1184 -5.9644 10 6 3.2626 -0.1176 -6.0695 11 1 3.6117 -1.1502 -6.0734 12 6 4.0719 0.8557 -6.9289 13 6 5.4698 0.4159 -7.3685 14 6 5.3094 1.4957 -6.2965 15 6 2.0323 -0.7105 1.2305 16 6 2.4586 0.0212 2.3240 17 6 2.9189 -0.6269 3.4533 18 6 2.9540 -2.0147 3.4899 19 8 3.4055 -2.6547 4.5987 20 6 3.9120 -1.8873 5.5848 21 1 3.8704 -0.8109 5.5068 22 6 4.4861 -2.4799 6.6991 23 7 4.5362 -3.7910 6.7944 24 14 5.1872 -1.4167 8.0656 25 1 4.1118 -0.5611 8.6283 26 1 5.7396 -2.2860 9.1353 27 1 6.2682 -0.5575 7.5192 28 6 2.5311 -2.7465 2.3879 29 6 2.0665 -2.0927 1.2637 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.4496 -1.4980 -1.4100 34 1 1.0872 0.6163 -2.5526 35 1 2.7590 1.0461 -2.1182 36 1 3.5905 -0.9273 -3.3690 37 1 1.9184 -1.3566 -3.8030 38 1 1.1109 -0.7587 -5.8992 39 1 1.3390 0.9672 -6.5076 40 1 3.4923 1.4615 -7.6255 41 1 5.8131 -0.5668 -7.0451 42 1 5.8101 0.7321 -8.3545 43 1 5.5442 2.5224 -6.5774 44 1 5.5472 1.2230 -5.2684 45 1 2.4306 1.1004 2.2950 46 1 3.2512 -0.0551 4.3070 47 1 4.9382 -4.2057 7.5738 48 1 2.5614 -3.8258 2.4117 49 1 1.7333 -2.6612 0.4081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886109562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:16 Heat of formation + Delta-G solvation = 33.193616 kcal Electronic energy + Delta-G solvation = -24697.507193 eV Core-core repulsion = 21205.171430 eV Total energy + Delta-G solvation = -3492.335764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.27028 -39.02798 -37.60725 -36.21632 -35.28378 -32.40138 -31.78264 -30.12927 -28.46799 -27.74364 -25.35295 -24.10509 -23.24748 -22.71877 -22.45350 -21.61842 -20.89341 -20.12321 -19.84476 -17.86842 -16.92764 -16.17216 -15.78096 -15.65168 -15.13060 -14.88629 -14.50184 -14.41291 -13.86408 -13.82964 -13.52891 -13.43274 -13.06594 -12.89725 -12.67446 -12.54350 -12.25111 -12.17094 -11.94942 -11.74430 -11.64168 -11.47980 -11.37498 -11.31504 -11.11893 -11.07014 -10.84106 -10.63806 -10.58841 -10.39873 -10.37737 -10.07845 -9.67238 -9.27237 -8.77415 -8.31295 -8.08467 -7.08306 -6.39909 -3.98688 2.30210 2.40218 3.15664 3.17071 3.19627 3.23478 3.66108 4.00754 4.03605 4.33098 4.49342 4.54425 4.65685 4.73410 4.77363 4.93623 5.02884 5.09752 5.13129 5.18011 5.21063 5.30493 5.32860 5.39110 5.41946 5.46159 5.48313 5.56069 5.58587 5.71295 5.77711 5.80332 5.82811 5.83348 5.88709 5.91076 5.99810 6.06637 6.13934 6.19691 6.29583 6.49466 6.78297 6.92606 7.08280 7.13581 7.36579 7.45423 7.49415 7.52300 7.90650 8.05309 9.05818 9.77429 10.78297 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.001969 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.427274 B =14215.359196 C =14870.727900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.141 3.859 3 H 0.074 0.926 4 N -0.681 5.681 5 C 0.063 3.937 6 C -0.088 4.088 7 C -0.139 4.139 8 H 0.105 0.895 9 C -0.174 4.174 10 C -0.122 4.122 11 H 0.105 0.895 12 C -0.126 4.126 13 C -0.178 4.178 14 C -0.177 4.177 15 C -0.166 4.166 16 C -0.069 4.069 17 C -0.233 4.233 18 C 0.153 3.847 19 O -0.180 6.180 20 C -0.391 4.391 21 H 0.090 0.910 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.194 4.194 29 C -0.053 4.053 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.338 0.662 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.125 0.875 47 H 0.270 0.730 48 H 0.114 0.886 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 9.680 -24.235 26.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.032 3.968 3 H 0.093 0.907 4 N -0.311 5.311 5 C -0.066 4.066 6 C -0.125 4.125 7 C -0.157 4.157 8 H 0.123 0.877 9 C -0.211 4.211 10 C -0.140 4.140 11 H 0.123 0.877 12 C -0.144 4.144 13 C -0.215 4.215 14 C -0.214 4.214 15 C -0.167 4.167 16 C -0.088 4.088 17 C -0.252 4.252 18 C 0.099 3.901 19 O -0.084 6.084 20 C -0.467 4.467 21 H 0.108 0.892 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.214 4.214 29 C -0.072 4.072 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.143 0.857 47 H 0.079 0.921 48 H 0.133 0.867 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.787 9.345 -23.828 25.874 hybrid contribution -0.575 0.718 0.461 1.029 sum -4.363 10.062 -23.367 25.813 Atomic orbital electron populations 1.22493 0.97336 1.02112 1.01502 1.20178 0.91748 0.96686 0.88195 0.90746 1.60603 1.57771 1.09459 1.03251 1.21934 0.99055 0.95656 0.89973 1.21159 1.02320 0.96879 0.92176 1.22392 1.03890 1.00309 0.89143 0.87731 1.23157 0.92512 1.03160 1.02224 1.21847 0.94495 0.98908 0.98798 0.87701 1.21747 0.89609 1.01317 1.01696 1.22978 0.99287 0.99848 0.99363 1.22982 1.01827 0.97824 0.98754 1.19081 1.09036 0.93550 0.95057 1.20543 0.97331 0.98059 0.92829 1.21101 1.09715 0.94415 1.00013 1.19384 0.92174 0.90922 0.87599 1.83979 1.67615 1.34998 1.21815 1.21259 1.38051 0.90644 0.96767 0.89217 1.25271 0.96827 0.96302 0.98168 1.70031 1.41842 1.08698 1.29408 0.85798 0.79263 0.78919 0.79535 1.19573 1.20325 1.19546 1.20209 1.08900 0.99309 0.92933 1.20307 0.97617 0.93406 0.95863 0.91892 0.93433 0.92399 0.84417 0.95519 0.91183 0.90618 0.92047 0.88813 0.89025 0.87929 0.88691 0.88951 0.88981 0.88406 0.87847 0.85716 0.92060 0.86744 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.14 37.16 0.34 -1.69 16 2 C 0.14 1.87 2.79 -68.86 -0.19 1.68 16 3 H 0.07 0.97 7.66 -51.93 -0.40 0.57 16 4 N -0.68 -8.16 5.70 -107.95 -0.62 -8.77 16 5 C 0.06 0.62 5.44 -3.82 -0.02 0.60 16 6 C -0.09 -0.77 5.76 -26.73 -0.15 -0.92 16 7 C -0.14 -1.09 5.38 -90.62 -0.49 -1.58 16 8 H 0.10 0.84 8.07 -51.93 -0.42 0.43 16 9 C -0.17 -1.23 9.90 -26.73 -0.26 -1.50 16 10 C -0.12 -0.93 5.59 -90.62 -0.51 -1.43 16 11 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.13 -0.90 5.87 -90.63 -0.53 -1.43 16 13 C -0.18 -1.21 10.25 -26.73 -0.27 -1.48 16 14 C -0.18 -1.26 10.18 -26.73 -0.27 -1.54 16 15 C -0.17 -2.83 4.96 -104.57 -0.52 -3.35 16 16 C -0.07 -1.28 9.66 -39.61 -0.38 -1.66 16 17 C -0.23 -5.16 9.17 -39.40 -0.36 -5.52 16 18 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 19 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 20 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16 21 H 0.09 2.36 5.20 -52.48 -0.27 2.08 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -25.69 13.67 55.48 0.76 -24.94 16 24 Si 0.94 20.80 29.55 -169.99 -5.02 15.77 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 28 C -0.19 -4.19 9.99 -39.39 -0.39 -4.59 16 29 C -0.05 -0.96 9.32 -39.61 -0.37 -1.33 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.47 7.45 -51.93 -0.39 0.09 16 32 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.34 3.73 7.81 -39.29 -0.31 3.43 16 34 H 0.03 0.25 7.44 -51.93 -0.39 -0.13 16 35 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.52 7.88 -51.93 -0.41 0.11 16 38 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.64 8.03 -52.49 -0.42 1.22 16 46 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 47 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 49 H 0.11 1.66 7.24 -52.49 -0.38 1.28 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -30.37 401.30 -11.58 -41.95 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -8.30 Total: 7.26 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: -4.45 Total: -32.08 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.14 Total: -33.71 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.37 -11.58 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886109562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.146 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds