Wall clock time and date at job start Tue Mar 31 2020 11:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 N 1.46898 * 109.47236 * 239.99675 * 2 1 3 5 5 C 1.46905 * 111.00046 * 85.00078 * 4 2 1 6 6 C 1.52997 * 109.47291 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46901 * 180.02562 * 6 5 4 8 8 H 1.09000 * 115.55102 * 29.32709 * 7 6 5 9 9 C 1.52999 * 117.49495 * 243.61726 * 7 6 5 10 10 C 1.53002 * 60.00175 * 252.50951 * 9 7 6 11 11 H 1.09003 * 117.51437 * 107.47771 * 10 9 7 12 12 C 1.52992 * 117.50454 * 252.51230 * 10 9 7 13 13 C 1.52999 * 117.50281 * 197.24545 * 12 10 9 14 14 C 1.52995 * 117.50138 * 128.61964 * 12 10 9 15 15 C 1.50701 * 109.46816 * 120.00173 * 2 1 3 16 16 C 1.38302 * 119.92694 * 259.99698 * 15 2 1 17 17 C 1.38105 * 120.06653 * 179.97438 * 16 15 2 18 18 C 1.38871 * 119.93200 * 0.02562 * 17 16 15 19 19 O 1.35753 * 120.07178 * 180.02562 * 18 17 16 20 20 C 1.34831 * 116.99766 * 354.46580 * 19 18 17 21 21 H 1.08005 * 119.99910 * 5.05947 * 20 19 18 22 22 C 1.38653 * 120.00325 * 185.05796 * 20 19 18 23 23 N 1.31555 * 119.99726 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00359 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47111 * 59.99485 * 24 22 20 26 26 H 1.48495 * 109.47007 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47035 * 299.99958 * 24 22 20 28 28 C 1.38880 * 119.86456 * 0.27348 * 18 17 16 29 29 C 1.38102 * 119.92802 * 359.44993 * 28 18 17 30 30 H 1.08993 * 109.47007 * 300.00307 * 1 2 3 31 31 H 1.08999 * 109.46703 * 60.00178 * 1 2 3 32 32 H 1.09006 * 109.47198 * 179.97438 * 1 2 3 33 33 H 1.00905 * 111.00248 * 321.04901 * 4 2 1 34 34 H 1.09001 * 109.47260 * 300.00366 * 5 4 2 35 35 H 1.09006 * 109.46745 * 59.99876 * 5 4 2 36 36 H 1.09001 * 109.46699 * 299.99865 * 6 5 4 37 37 H 1.08997 * 109.47300 * 60.00189 * 6 5 4 38 38 H 1.08993 * 117.50272 * 0.02562 * 9 7 6 39 39 H 1.09003 * 117.49351 * 145.02306 * 9 7 6 40 40 H 1.09007 * 115.54682 * 342.95015 * 12 10 9 41 41 H 1.09002 * 117.49639 * 359.97438 * 13 12 10 42 42 H 1.08993 * 117.49982 * 145.01827 * 13 12 10 43 43 H 1.09006 * 117.50060 * 214.98079 * 14 12 10 44 44 H 1.08998 * 117.49669 * 0.02562 * 14 12 10 45 45 H 1.08001 * 119.96717 * 0.02562 * 16 15 2 46 46 H 1.07996 * 120.03107 * 180.02562 * 17 16 15 47 47 H 0.97003 * 120.00171 * 179.97438 * 23 22 20 48 48 H 1.08001 * 120.03810 * 179.72208 * 28 18 17 49 49 H 1.07996 * 119.96803 * 180.27492 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5951 -0.5333 -3.5744 7 6 2.6611 0.4200 -4.7694 8 1 2.8423 1.4669 -4.5262 9 6 1.7546 0.1184 -5.9644 10 6 3.2626 -0.1176 -6.0695 11 1 3.6117 -1.1502 -6.0734 12 6 4.0719 0.8557 -6.9289 13 6 5.4698 0.4159 -7.3685 14 6 5.3094 1.4957 -6.2965 15 6 2.0323 -0.7105 1.2305 16 6 2.4586 0.0212 2.3240 17 6 2.9189 -0.6269 3.4533 18 6 2.9540 -2.0147 3.4899 19 8 3.4055 -2.6547 4.5987 20 6 3.9120 -1.8873 5.5848 21 1 3.8704 -0.8109 5.5068 22 6 4.4861 -2.4799 6.6991 23 7 4.5362 -3.7910 6.7944 24 14 5.1872 -1.4167 8.0656 25 1 4.1118 -0.5611 8.6283 26 1 5.7396 -2.2860 9.1353 27 1 6.2682 -0.5575 7.5192 28 6 2.5311 -2.7465 2.3879 29 6 2.0665 -2.0927 1.2637 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.4496 -1.4980 -1.4100 34 1 1.0872 0.6163 -2.5526 35 1 2.7590 1.0461 -2.1182 36 1 3.5905 -0.9273 -3.3690 37 1 1.9184 -1.3566 -3.8030 38 1 1.1109 -0.7587 -5.8992 39 1 1.3390 0.9672 -6.5076 40 1 3.4923 1.4615 -7.6255 41 1 5.8131 -0.5668 -7.0451 42 1 5.8101 0.7321 -8.3545 43 1 5.5442 2.5224 -6.5774 44 1 5.5472 1.2230 -5.2684 45 1 2.4306 1.1004 2.2950 46 1 3.2512 -0.0551 4.3070 47 1 4.9382 -4.2057 7.5738 48 1 2.5614 -3.8258 2.4117 49 1 1.7333 -2.6612 0.4081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886109562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:14 Heat of formation + Delta-G solvation = 18.025320 kcal Electronic energy + Delta-G solvation = -24698.164940 eV Core-core repulsion = 21205.171430 eV Total energy + Delta-G solvation = -3492.993511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.82547 -39.76292 -39.00653 -37.29325 -36.21312 -34.28763 -32.92730 -31.76324 -29.74988 -28.81498 -27.33753 -24.76831 -24.17403 -23.85692 -23.27502 -22.95998 -21.73169 -21.20117 -20.63160 -19.72089 -18.79221 -17.04381 -16.59721 -16.55858 -16.29484 -16.21852 -15.81283 -15.65313 -15.46038 -15.17422 -14.87508 -14.43096 -14.36677 -14.01618 -13.94578 -13.68655 -13.52799 -13.40800 -13.01823 -12.88348 -12.58754 -12.48052 -12.37585 -12.30141 -12.16505 -12.10573 -12.04556 -12.00102 -11.78634 -11.52420 -11.41101 -11.13546 -10.75947 -10.66621 -10.26263 -9.72410 -9.24957 -8.82675 -8.45045 -6.13050 0.65146 0.76305 1.34921 1.46116 1.51437 2.19193 2.66359 2.84115 3.10099 3.14412 3.31043 3.56513 3.71370 3.91157 3.95554 4.00259 4.11111 4.15858 4.20137 4.22383 4.32389 4.37219 4.40944 4.44474 4.52496 4.61268 4.64396 4.71717 4.74687 4.80391 4.80962 4.90737 4.94238 4.98502 5.04917 5.11648 5.14235 5.20677 5.26308 5.27533 5.29793 5.30135 5.33865 5.36846 5.50343 5.63662 5.75409 5.83043 6.05491 6.22461 6.30916 6.57309 6.99554 7.82102 8.78203 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.001969 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.427274 B =14215.359196 C =14870.727900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.145 3.855 3 H 0.084 0.916 4 N -0.693 5.693 5 C 0.069 3.931 6 C -0.080 4.080 7 C -0.141 4.141 8 H 0.103 0.897 9 C -0.165 4.165 10 C -0.128 4.128 11 H 0.100 0.900 12 C -0.128 4.128 13 C -0.179 4.179 14 C -0.182 4.182 15 C -0.141 4.141 16 C -0.070 4.070 17 C -0.242 4.242 18 C 0.108 3.892 19 O -0.235 6.235 20 C -0.413 4.413 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.019 2.981 25 H -0.257 1.257 26 H -0.271 1.271 27 H -0.258 1.258 28 C -0.207 4.207 29 C -0.047 4.047 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.345 0.655 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.138 0.862 46 H 0.117 0.883 47 H 0.272 0.728 48 H 0.109 0.891 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 12.197 -26.684 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.035 3.965 3 H 0.103 0.897 4 N -0.324 5.324 5 C -0.060 4.060 6 C -0.118 4.118 7 C -0.160 4.160 8 H 0.122 0.878 9 C -0.202 4.202 10 C -0.146 4.146 11 H 0.118 0.882 12 C -0.146 4.146 13 C -0.216 4.216 14 C -0.219 4.219 15 C -0.142 4.142 16 C -0.088 4.088 17 C -0.261 4.261 18 C 0.059 3.941 19 O -0.142 6.142 20 C -0.489 4.489 21 H 0.118 0.882 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.838 3.162 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.183 1.183 28 C -0.226 4.226 29 C -0.065 4.065 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.164 0.836 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.156 0.844 46 H 0.135 0.865 47 H 0.081 0.919 48 H 0.127 0.873 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.904 11.887 -26.340 29.311 hybrid contribution -0.366 0.008 0.856 0.931 sum -5.270 11.895 -25.484 28.613 Atomic orbital electron populations 1.22419 0.95476 1.02487 1.02503 1.20143 0.92994 0.96512 0.86815 0.89743 1.60501 1.58108 1.10186 1.03613 1.21910 0.99664 0.95127 0.89314 1.21059 1.01466 0.97101 0.92182 1.22313 1.04734 0.99972 0.88997 0.87845 1.23212 0.92138 1.03560 1.01316 1.21863 0.95167 0.98752 0.98785 0.88241 1.21798 0.89701 1.01330 1.01760 1.23045 0.99130 0.99631 0.99772 1.22998 1.02105 0.98393 0.98378 1.19675 1.05184 0.93319 0.96012 1.20928 0.96171 0.99942 0.91799 1.21210 1.10221 0.93490 1.01224 1.19930 0.93967 0.92492 0.87754 1.83939 1.70308 1.36483 1.23519 1.21768 1.38464 0.91347 0.97337 0.88247 1.26599 0.96973 0.97856 1.00804 1.70184 1.44168 1.10969 1.30735 0.84650 0.78809 0.77048 0.75708 1.18109 1.19601 1.18261 1.20468 1.09269 0.99405 0.93446 1.20668 0.96176 0.94266 0.95379 0.92250 0.91168 0.92386 0.83628 0.94205 0.91675 0.92184 0.91493 0.88348 0.88229 0.87232 0.89020 0.87905 0.88168 0.89371 0.84404 0.86540 0.91910 0.87267 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.14 71.98 0.66 -2.54 16 2 C 0.15 3.26 2.79 44.17 0.12 3.38 16 3 H 0.08 1.82 7.66 -2.39 -0.02 1.80 16 4 N -0.69 -14.12 5.70 -495.43 -2.82 -16.94 16 5 C 0.07 1.12 5.44 86.30 0.47 1.59 16 6 C -0.08 -1.21 5.76 30.59 0.18 -1.04 16 7 C -0.14 -1.90 5.38 -10.79 -0.06 -1.96 16 8 H 0.10 1.43 8.07 -2.39 -0.02 1.42 16 9 C -0.17 -1.92 9.90 30.59 0.30 -1.62 16 10 C -0.13 -1.71 5.59 -10.79 -0.06 -1.77 16 11 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 12 C -0.13 -1.61 5.87 -10.80 -0.06 -1.68 16 13 C -0.18 -2.19 10.25 30.59 0.31 -1.87 16 14 C -0.18 -2.36 10.18 30.59 0.31 -2.05 16 15 C -0.14 -4.42 4.96 -19.83 -0.10 -4.52 16 16 C -0.07 -2.47 9.66 22.25 0.21 -2.25 16 17 C -0.24 -10.87 9.17 22.39 0.21 -10.66 16 18 C 0.11 5.59 6.65 22.58 0.15 5.74 16 19 O -0.24 -14.61 9.76 -22.78 -0.22 -14.83 16 20 C -0.41 -24.67 9.49 67.92 0.64 -24.03 16 21 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 22 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 23 N -0.92 -57.75 13.67 21.61 0.30 -57.46 16 24 Si 1.02 43.71 29.55 68.60 2.03 45.74 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 28 C -0.21 -9.12 9.99 22.39 0.22 -8.90 16 29 C -0.05 -1.61 9.32 22.25 0.21 -1.40 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.05 7.45 -2.39 -0.02 1.04 16 32 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16 33 H 0.34 6.28 7.81 -89.69 -0.70 5.58 16 34 H 0.04 0.57 7.44 -2.39 -0.02 0.56 16 35 H 0.06 1.15 8.06 -2.38 -0.02 1.13 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 0.94 7.88 -2.39 -0.02 0.92 16 38 H 0.10 1.06 8.03 -2.39 -0.02 1.04 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.14 3.90 8.03 -2.91 -0.02 3.88 16 46 H 0.12 5.31 5.64 -2.91 -0.02 5.30 16 47 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 48 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 49 H 0.14 3.90 7.24 -2.91 -0.02 3.88 16 Total: -1.00 -70.48 401.30 3.69 -66.79 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.23 Total: 33.27 kcal Atomic # 6 Polarization: -60.76 SS G_CDS: 4.19 Total: -56.57 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -2.53 Total: -74.40 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.22 Total: -14.83 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -70.48 3.69 -66.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886109562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.814 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds