Wall clock time and date at job start Tue Mar 31 2020 11:04:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08997 * 109.47219 * 2 1
4 4 N 1.46898 * 109.47236 * 239.99675 * 2 1 3
5 5 C 1.46905 * 111.00046 * 85.00078 * 4 2 1
6 6 C 1.52997 * 109.47291 * 180.02562 * 5 4 2
7 7 C 1.53003 * 109.46901 * 180.02562 * 6 5 4
8 8 H 1.09000 * 115.55102 * 29.32709 * 7 6 5
9 9 C 1.52999 * 117.49495 * 243.61726 * 7 6 5
10 10 C 1.53002 * 60.00175 * 252.50951 * 9 7 6
11 11 H 1.09003 * 117.51437 * 107.47771 * 10 9 7
12 12 C 1.52992 * 117.50454 * 252.51230 * 10 9 7
13 13 C 1.52999 * 117.50281 * 197.24545 * 12 10 9
14 14 C 1.52995 * 117.50138 * 128.61964 * 12 10 9
15 15 C 1.50701 * 109.46816 * 120.00173 * 2 1 3
16 16 C 1.38302 * 119.92694 * 259.99698 * 15 2 1
17 17 C 1.38105 * 120.06653 * 179.97438 * 16 15 2
18 18 C 1.38871 * 119.93200 * 0.02562 * 17 16 15
19 19 O 1.35753 * 120.07178 * 180.02562 * 18 17 16
20 20 C 1.34831 * 116.99766 * 354.46580 * 19 18 17
21 21 H 1.08005 * 119.99910 * 5.05947 * 20 19 18
22 22 C 1.38653 * 120.00325 * 185.05796 * 20 19 18
23 23 N 1.31555 * 119.99726 * 359.97438 * 22 20 19
24 24 Si 1.86799 * 120.00359 * 180.02562 * 22 20 19
25 25 H 1.48498 * 109.47111 * 59.99485 * 24 22 20
26 26 H 1.48495 * 109.47007 * 180.02562 * 24 22 20
27 27 H 1.48501 * 109.47035 * 299.99958 * 24 22 20
28 28 C 1.38880 * 119.86456 * 0.27348 * 18 17 16
29 29 C 1.38102 * 119.92802 * 359.44993 * 28 18 17
30 30 H 1.08993 * 109.47007 * 300.00307 * 1 2 3
31 31 H 1.08999 * 109.46703 * 60.00178 * 1 2 3
32 32 H 1.09006 * 109.47198 * 179.97438 * 1 2 3
33 33 H 1.00905 * 111.00248 * 321.04901 * 4 2 1
34 34 H 1.09001 * 109.47260 * 300.00366 * 5 4 2
35 35 H 1.09006 * 109.46745 * 59.99876 * 5 4 2
36 36 H 1.09001 * 109.46699 * 299.99865 * 6 5 4
37 37 H 1.08997 * 109.47300 * 60.00189 * 6 5 4
38 38 H 1.08993 * 117.50272 * 0.02562 * 9 7 6
39 39 H 1.09003 * 117.49351 * 145.02306 * 9 7 6
40 40 H 1.09007 * 115.54682 * 342.95015 * 12 10 9
41 41 H 1.09002 * 117.49639 * 359.97438 * 13 12 10
42 42 H 1.08993 * 117.49982 * 145.01827 * 13 12 10
43 43 H 1.09006 * 117.50060 * 214.98079 * 14 12 10
44 44 H 1.08998 * 117.49669 * 0.02562 * 14 12 10
45 45 H 1.08001 * 119.96717 * 0.02562 * 16 15 2
46 46 H 1.07996 * 120.03107 * 180.02562 * 17 16 15
47 47 H 0.97003 * 120.00171 * 179.97438 * 23 22 20
48 48 H 1.08001 * 120.03810 * 179.72208 * 28 18 17
49 49 H 1.07996 * 119.96803 * 180.27492 * 29 28 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0197 -0.6925 -1.1994
5 6 2.0826 0.2225 -2.3469
6 6 2.5951 -0.5333 -3.5744
7 6 2.6611 0.4200 -4.7694
8 1 2.8423 1.4669 -4.5262
9 6 1.7546 0.1184 -5.9644
10 6 3.2626 -0.1176 -6.0695
11 1 3.6117 -1.1502 -6.0734
12 6 4.0719 0.8557 -6.9289
13 6 5.4698 0.4159 -7.3685
14 6 5.3094 1.4957 -6.2965
15 6 2.0323 -0.7105 1.2305
16 6 2.4586 0.0212 2.3240
17 6 2.9189 -0.6269 3.4533
18 6 2.9540 -2.0147 3.4899
19 8 3.4055 -2.6547 4.5987
20 6 3.9120 -1.8873 5.5848
21 1 3.8704 -0.8109 5.5068
22 6 4.4861 -2.4799 6.6991
23 7 4.5362 -3.7910 6.7944
24 14 5.1872 -1.4167 8.0656
25 1 4.1118 -0.5611 8.6283
26 1 5.7396 -2.2860 9.1353
27 1 6.2682 -0.5575 7.5192
28 6 2.5311 -2.7465 2.3879
29 6 2.0665 -2.0927 1.2637
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 -1.0277 -0.0005
33 1 1.4496 -1.4980 -1.4100
34 1 1.0872 0.6163 -2.5526
35 1 2.7590 1.0461 -2.1182
36 1 3.5905 -0.9273 -3.3690
37 1 1.9184 -1.3566 -3.8030
38 1 1.1109 -0.7587 -5.8992
39 1 1.3390 0.9672 -6.5076
40 1 3.4923 1.4615 -7.6255
41 1 5.8131 -0.5668 -7.0451
42 1 5.8101 0.7321 -8.3545
43 1 5.5442 2.5224 -6.5774
44 1 5.5472 1.2230 -5.2684
45 1 2.4306 1.1004 2.2950
46 1 3.2512 -0.0551 4.3070
47 1 4.9382 -4.2057 7.5738
48 1 2.5614 -3.8258 2.4117
49 1 1.7333 -2.6612 0.4081
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000886109562.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:04:14
Heat of formation + Delta-G solvation = 18.025320 kcal
Electronic energy + Delta-G solvation = -24698.164940 eV
Core-core repulsion = 21205.171430 eV
Total energy + Delta-G solvation = -3492.993511 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.80 seconds
Orbital eigenvalues (eV)
-40.82547 -39.76292 -39.00653 -37.29325 -36.21312 -34.28763 -32.92730 -31.76324
-29.74988 -28.81498 -27.33753 -24.76831 -24.17403 -23.85692 -23.27502 -22.95998
-21.73169 -21.20117 -20.63160 -19.72089 -18.79221 -17.04381 -16.59721 -16.55858
-16.29484 -16.21852 -15.81283 -15.65313 -15.46038 -15.17422 -14.87508 -14.43096
-14.36677 -14.01618 -13.94578 -13.68655 -13.52799 -13.40800 -13.01823 -12.88348
-12.58754 -12.48052 -12.37585 -12.30141 -12.16505 -12.10573 -12.04556 -12.00102
-11.78634 -11.52420 -11.41101 -11.13546 -10.75947 -10.66621 -10.26263 -9.72410
-9.24957 -8.82675 -8.45045 -6.13050 0.65146 0.76305 1.34921 1.46116
1.51437 2.19193 2.66359 2.84115 3.10099 3.14412 3.31043 3.56513
3.71370 3.91157 3.95554 4.00259 4.11111 4.15858 4.20137 4.22383
4.32389 4.37219 4.40944 4.44474 4.52496 4.61268 4.64396 4.71717
4.74687 4.80391 4.80962 4.90737 4.94238 4.98502 5.04917 5.11648
5.14235 5.20677 5.26308 5.27533 5.29793 5.30135 5.33865 5.36846
5.50343 5.63662 5.75409 5.83043 6.05491 6.22461 6.30916 6.57309
6.99554 7.82102 8.78203
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.019327 B = 0.001969 C = 0.001882
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1448.427274 B =14215.359196 C =14870.727900
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.145 3.855
3 H 0.084 0.916
4 N -0.693 5.693
5 C 0.069 3.931
6 C -0.080 4.080
7 C -0.141 4.141
8 H 0.103 0.897
9 C -0.165 4.165
10 C -0.128 4.128
11 H 0.100 0.900
12 C -0.128 4.128
13 C -0.179 4.179
14 C -0.182 4.182
15 C -0.141 4.141
16 C -0.070 4.070
17 C -0.242 4.242
18 C 0.108 3.892
19 O -0.235 6.235
20 C -0.413 4.413
21 H 0.100 0.900
22 C -0.025 4.025
23 N -0.922 5.922
24 Si 1.019 2.981
25 H -0.257 1.257
26 H -0.271 1.271
27 H -0.258 1.258
28 C -0.207 4.207
29 C -0.047 4.047
30 H 0.058 0.942
31 H 0.069 0.931
32 H 0.057 0.943
33 H 0.345 0.655
34 H 0.040 0.960
35 H 0.065 0.935
36 H 0.059 0.941
37 H 0.066 0.934
38 H 0.098 0.902
39 H 0.099 0.901
40 H 0.110 0.890
41 H 0.091 0.909
42 H 0.103 0.897
43 H 0.100 0.900
44 H 0.088 0.912
45 H 0.138 0.862
46 H 0.117 0.883
47 H 0.272 0.728
48 H 0.109 0.891
49 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.642 12.197 -26.684 29.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.035 3.965
3 H 0.103 0.897
4 N -0.324 5.324
5 C -0.060 4.060
6 C -0.118 4.118
7 C -0.160 4.160
8 H 0.122 0.878
9 C -0.202 4.202
10 C -0.146 4.146
11 H 0.118 0.882
12 C -0.146 4.146
13 C -0.216 4.216
14 C -0.219 4.219
15 C -0.142 4.142
16 C -0.088 4.088
17 C -0.261 4.261
18 C 0.059 3.941
19 O -0.142 6.142
20 C -0.489 4.489
21 H 0.118 0.882
22 C -0.222 4.222
23 N -0.561 5.561
24 Si 0.838 3.162
25 H -0.181 1.181
26 H -0.196 1.196
27 H -0.183 1.183
28 C -0.226 4.226
29 C -0.065 4.065
30 H 0.077 0.923
31 H 0.088 0.912
32 H 0.076 0.924
33 H 0.164 0.836
34 H 0.058 0.942
35 H 0.083 0.917
36 H 0.078 0.922
37 H 0.085 0.915
38 H 0.117 0.883
39 H 0.118 0.882
40 H 0.128 0.872
41 H 0.110 0.890
42 H 0.121 0.879
43 H 0.118 0.882
44 H 0.106 0.894
45 H 0.156 0.844
46 H 0.135 0.865
47 H 0.081 0.919
48 H 0.127 0.873
49 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -4.904 11.887 -26.340 29.311
hybrid contribution -0.366 0.008 0.856 0.931
sum -5.270 11.895 -25.484 28.613
Atomic orbital electron populations
1.22419 0.95476 1.02487 1.02503 1.20143 0.92994 0.96512 0.86815
0.89743 1.60501 1.58108 1.10186 1.03613 1.21910 0.99664 0.95127
0.89314 1.21059 1.01466 0.97101 0.92182 1.22313 1.04734 0.99972
0.88997 0.87845 1.23212 0.92138 1.03560 1.01316 1.21863 0.95167
0.98752 0.98785 0.88241 1.21798 0.89701 1.01330 1.01760 1.23045
0.99130 0.99631 0.99772 1.22998 1.02105 0.98393 0.98378 1.19675
1.05184 0.93319 0.96012 1.20928 0.96171 0.99942 0.91799 1.21210
1.10221 0.93490 1.01224 1.19930 0.93967 0.92492 0.87754 1.83939
1.70308 1.36483 1.23519 1.21768 1.38464 0.91347 0.97337 0.88247
1.26599 0.96973 0.97856 1.00804 1.70184 1.44168 1.10969 1.30735
0.84650 0.78809 0.77048 0.75708 1.18109 1.19601 1.18261 1.20468
1.09269 0.99405 0.93446 1.20668 0.96176 0.94266 0.95379 0.92250
0.91168 0.92386 0.83628 0.94205 0.91675 0.92184 0.91493 0.88348
0.88229 0.87232 0.89020 0.87905 0.88168 0.89371 0.84404 0.86540
0.91910 0.87267 0.84075
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.20 9.14 71.98 0.66 -2.54 16
2 C 0.15 3.26 2.79 44.17 0.12 3.38 16
3 H 0.08 1.82 7.66 -2.39 -0.02 1.80 16
4 N -0.69 -14.12 5.70 -495.43 -2.82 -16.94 16
5 C 0.07 1.12 5.44 86.30 0.47 1.59 16
6 C -0.08 -1.21 5.76 30.59 0.18 -1.04 16
7 C -0.14 -1.90 5.38 -10.79 -0.06 -1.96 16
8 H 0.10 1.43 8.07 -2.39 -0.02 1.42 16
9 C -0.17 -1.92 9.90 30.59 0.30 -1.62 16
10 C -0.13 -1.71 5.59 -10.79 -0.06 -1.77 16
11 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16
12 C -0.13 -1.61 5.87 -10.80 -0.06 -1.68 16
13 C -0.18 -2.19 10.25 30.59 0.31 -1.87 16
14 C -0.18 -2.36 10.18 30.59 0.31 -2.05 16
15 C -0.14 -4.42 4.96 -19.83 -0.10 -4.52 16
16 C -0.07 -2.47 9.66 22.25 0.21 -2.25 16
17 C -0.24 -10.87 9.17 22.39 0.21 -10.66 16
18 C 0.11 5.59 6.65 22.58 0.15 5.74 16
19 O -0.24 -14.61 9.76 -22.78 -0.22 -14.83 16
20 C -0.41 -24.67 9.49 67.92 0.64 -24.03 16
21 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16
22 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16
23 N -0.92 -57.75 13.67 21.61 0.30 -57.46 16
24 Si 1.02 43.71 29.55 68.60 2.03 45.74 16
25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16
26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16
27 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16
28 C -0.21 -9.12 9.99 22.39 0.22 -8.90 16
29 C -0.05 -1.61 9.32 22.25 0.21 -1.40 16
30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
31 H 0.07 1.05 7.45 -2.39 -0.02 1.04 16
32 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16
33 H 0.34 6.28 7.81 -89.69 -0.70 5.58 16
34 H 0.04 0.57 7.44 -2.39 -0.02 0.56 16
35 H 0.06 1.15 8.06 -2.38 -0.02 1.13 16
36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
37 H 0.07 0.94 7.88 -2.39 -0.02 0.92 16
38 H 0.10 1.06 8.03 -2.39 -0.02 1.04 16
39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
40 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16
41 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16
42 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
43 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16
44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
45 H 0.14 3.90 8.03 -2.91 -0.02 3.88 16
46 H 0.12 5.31 5.64 -2.91 -0.02 5.30 16
47 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16
48 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16
49 H 0.14 3.90 7.24 -2.91 -0.02 3.88 16
Total: -1.00 -70.48 401.30 3.69 -66.79
By element:
Atomic # 1 Polarization: 33.05 SS G_CDS: 0.23 Total: 33.27 kcal
Atomic # 6 Polarization: -60.76 SS G_CDS: 4.19 Total: -56.57 kcal
Atomic # 7 Polarization: -71.87 SS G_CDS: -2.53 Total: -74.40 kcal
Atomic # 8 Polarization: -14.61 SS G_CDS: -0.22 Total: -14.83 kcal
Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal
Total: -70.48 3.69 -66.79 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000886109562.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.814 kcal
(2) G-P(sol) polarization free energy of solvation -70.475 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.338 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.788 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.025 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.80 seconds