Wall clock time and date at job start Tue Mar 31 2020 10:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47522 * 2 1 4 4 N 1.46901 * 109.47486 * 240.00470 * 2 1 3 5 5 C 1.46898 * 111.00133 * 84.99303 * 4 2 1 6 6 C 1.53001 * 109.46981 * 180.02562 * 5 4 2 7 7 H 1.08992 * 115.56326 * 29.31345 * 6 5 4 8 8 C 1.53004 * 117.49999 * 243.62518 * 6 5 4 9 9 C 1.52995 * 60.00057 * 252.51205 * 8 6 5 10 10 H 1.08997 * 117.49718 * 252.51179 * 9 8 6 11 11 C 1.53002 * 117.49863 * 107.51204 * 9 8 6 12 12 H 1.09000 * 115.54983 * 325.58211 * 11 9 8 13 13 C 1.53004 * 117.49983 * 179.87348 * 11 9 8 14 14 C 1.52995 * 59.99930 * 252.51219 * 13 11 9 15 15 H 1.09000 * 117.50086 * 252.50713 * 14 13 11 16 16 C 1.52999 * 117.51884 * 107.48095 * 14 13 11 17 17 C 1.50701 * 109.47423 * 120.00048 * 2 1 3 18 18 C 1.38302 * 119.92880 * 79.72426 * 17 2 1 19 19 C 1.38099 * 120.07143 * 179.72815 * 18 17 2 20 20 C 1.38886 * 119.92518 * 0.56816 * 19 18 17 21 21 O 1.35750 * 120.06625 * 179.67809 * 20 19 18 22 22 C 1.34830 * 116.99853 * 174.48512 * 21 20 19 23 23 H 1.08000 * 119.99617 * 5.07077 * 22 21 20 24 24 C 1.38653 * 120.00042 * 185.05635 * 22 21 20 25 25 N 1.31559 * 119.99954 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99887 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46930 * 90.00751 * 26 24 22 28 28 H 1.48497 * 109.47205 * 210.00209 * 26 24 22 29 29 H 1.48501 * 109.47357 * 330.00726 * 26 24 22 30 30 C 1.38876 * 119.86269 * 359.70736 * 20 19 18 31 31 C 1.38097 * 119.93130 * 359.97438 * 30 20 19 32 32 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46953 * 299.99757 * 1 2 3 34 34 H 1.09007 * 109.47250 * 59.99744 * 1 2 3 35 35 H 1.00892 * 111.00508 * 208.95599 * 4 2 1 36 36 H 1.09001 * 109.46446 * 60.01067 * 5 4 2 37 37 H 1.08999 * 109.47562 * 300.00511 * 5 4 2 38 38 H 1.09004 * 117.49746 * 145.01913 * 8 6 5 39 39 H 1.09005 * 117.51787 * 359.97438 * 8 6 5 40 40 H 1.09009 * 117.49363 * 0.02562 * 13 11 9 41 41 H 1.08998 * 117.49866 * 145.01646 * 13 11 9 42 42 H 1.09002 * 109.47664 * 351.36989 * 16 14 13 43 43 H 1.09002 * 109.47305 * 111.36946 * 16 14 13 44 44 H 1.08997 * 109.47304 * 231.36321 * 16 14 13 45 45 H 1.08003 * 119.96408 * 359.97438 * 18 17 2 46 46 H 1.07996 * 120.04114 * 180.27498 * 19 18 17 47 47 H 0.96995 * 119.99695 * 179.97438 * 25 24 22 48 48 H 1.07999 * 120.03573 * 179.97438 * 30 20 19 49 49 H 1.08007 * 119.96729 * 179.97438 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 1 2.3632 -1.5976 -3.6021 8 6 3.9298 -0.0849 -4.1734 9 6 2.6218 0.2190 -4.9067 10 1 2.4075 -0.3511 -5.8107 11 6 2.1341 1.6692 -4.9098 12 1 2.3471 2.2387 -4.0051 13 6 0.8276 1.9736 -5.6456 14 6 2.1636 2.4216 -6.2416 15 1 2.3957 3.4862 -6.2133 16 6 2.6791 1.6664 -7.4683 17 6 2.0324 -0.7104 1.2304 18 6 2.0608 -2.0927 1.2659 19 6 2.5259 -2.7467 2.3898 20 6 2.9542 -2.0148 3.4897 21 8 3.4058 -2.6548 4.5984 22 6 3.9125 -1.8874 5.5844 23 1 3.8709 -0.8111 5.5064 24 6 4.4868 -2.4802 6.6986 25 7 4.5377 -3.7913 6.7935 26 14 5.1881 -1.4169 8.0650 27 1 4.1291 -1.1373 9.0677 28 1 6.3135 -2.1311 8.7198 29 1 5.6793 -0.1372 7.4939 30 6 2.9191 -0.6270 3.4531 31 6 2.4591 0.0211 2.3238 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 2.9173 -1.1204 -1.0288 36 1 2.7588 1.0463 -2.1181 37 1 1.0870 0.6164 -2.5525 38 1 4.5760 -0.8549 -4.5950 39 1 4.4427 0.7485 -3.6934 40 1 0.3154 1.1406 -6.1271 41 1 0.1807 2.7434 -5.2249 42 1 2.0537 0.7914 -7.6457 43 1 2.6436 2.3208 -8.3393 44 1 3.7071 1.3490 -7.2941 45 1 1.7227 -2.6612 0.4121 46 1 2.5521 -3.8260 2.4152 47 1 4.9397 -4.2059 7.5727 48 1 3.2511 -0.0551 4.3070 49 1 2.4310 1.1004 2.2949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886693688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:08 Heat of formation + Delta-G solvation = 34.327888 kcal Electronic energy + Delta-G solvation = -25073.214026 eV Core-core repulsion = 21580.927448 eV Total energy + Delta-G solvation = -3492.286578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.50876 -39.10155 -37.52680 -36.36942 -34.87338 -32.28674 -30.73668 -30.12020 -28.84433 -27.91921 -25.79737 -25.31475 -23.92881 -22.28578 -21.98969 -21.71590 -20.83786 -19.88577 -18.86079 -17.92727 -17.01145 -16.48286 -16.03993 -15.27937 -15.00569 -14.55122 -14.50829 -14.07299 -13.88673 -13.65428 -13.49434 -13.45604 -13.14228 -12.91420 -12.77439 -12.74844 -12.52174 -12.31432 -11.92595 -11.80818 -11.67360 -11.56590 -11.40466 -11.24828 -11.22482 -11.05334 -10.67843 -10.64828 -10.50361 -10.42523 -10.26061 -9.90024 -9.52112 -9.33043 -8.82633 -8.33446 -8.15880 -7.16938 -6.45034 -4.03900 2.23638 2.31414 3.12228 3.13145 3.17945 3.19227 3.85746 3.96514 4.14725 4.20180 4.46629 4.57262 4.58336 4.82281 4.93390 4.98696 5.01405 5.09109 5.09711 5.13504 5.26148 5.33379 5.44431 5.47634 5.48808 5.51432 5.54555 5.61313 5.69024 5.70702 5.71841 5.77640 5.87177 5.89645 5.96420 5.97099 6.03392 6.05282 6.14862 6.24778 6.41170 6.49206 6.74392 6.88691 7.05315 7.08975 7.28053 7.43871 7.45349 7.58147 7.84425 8.00114 9.00640 9.71248 10.72998 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.027883 B = 0.002007 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.971410 B =13945.022773 C =14035.655684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.143 3.857 3 H 0.039 0.961 4 N -0.683 5.683 5 C 0.093 3.907 6 C -0.139 4.139 7 H 0.113 0.887 8 C -0.176 4.176 9 C -0.117 4.117 10 H 0.103 0.897 11 C -0.118 4.118 12 H 0.103 0.897 13 C -0.173 4.173 14 C -0.154 4.154 15 H 0.101 0.899 16 C -0.120 4.120 17 C -0.192 4.192 18 C -0.055 4.055 19 C -0.195 4.195 20 C 0.155 3.845 21 O -0.178 6.178 22 C -0.392 4.392 23 H 0.091 0.909 24 C 0.039 3.961 25 N -0.862 5.862 26 Si 0.941 3.059 27 H -0.273 1.273 28 H -0.277 1.277 29 H -0.268 1.268 30 C -0.235 4.235 31 C -0.066 4.066 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.346 0.654 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.270 0.730 48 H 0.126 0.874 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.547 10.697 -23.046 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.034 3.966 3 H 0.057 0.943 4 N -0.315 5.315 5 C -0.037 4.037 6 C -0.157 4.157 7 H 0.131 0.869 8 C -0.213 4.213 9 C -0.135 4.135 10 H 0.122 0.878 11 C -0.136 4.136 12 H 0.121 0.879 13 C -0.210 4.210 14 C -0.172 4.172 15 H 0.119 0.881 16 C -0.177 4.177 17 C -0.193 4.193 18 C -0.073 4.073 19 C -0.214 4.214 20 C 0.101 3.899 21 O -0.081 6.081 22 C -0.468 4.468 23 H 0.109 0.891 24 C -0.165 4.165 25 N -0.497 5.497 26 Si 0.765 3.235 27 H -0.199 1.199 28 H -0.202 1.202 29 H -0.192 1.192 30 C -0.254 4.254 31 C -0.085 4.085 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.165 0.835 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.080 0.920 48 H 0.143 0.857 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.065 10.034 -22.969 25.572 hybrid contribution 1.144 1.178 1.023 1.935 sum -3.921 11.212 -21.946 24.954 Atomic orbital electron populations 1.21770 0.94612 1.02282 1.00312 1.20124 0.95094 0.94393 0.86983 0.94336 1.60578 1.33718 1.32886 1.04284 1.21503 1.00060 0.92950 0.89148 1.22406 1.00066 1.00128 0.93145 0.86903 1.23127 0.90686 1.03276 1.04205 1.21750 1.01414 0.94354 0.96000 0.87849 1.21792 1.01213 0.94756 0.95842 0.87910 1.23090 0.90531 1.03237 1.04102 1.22353 1.01065 0.99300 0.94492 0.88080 1.21325 1.01095 0.99512 0.95781 1.19267 1.10132 0.93817 0.96102 1.20496 0.96951 0.93372 0.96527 1.20259 1.08787 0.99424 0.92950 1.19428 0.91965 0.90920 0.87572 1.83981 1.67332 1.35069 1.21765 1.21317 1.38030 0.90686 0.96776 0.89121 1.25287 0.96764 0.96321 0.98169 1.70039 1.41686 1.08710 1.29298 0.85718 0.78678 0.79081 0.79986 1.19886 1.20248 1.19240 1.21112 1.09862 0.94436 0.99999 1.20582 0.96993 0.98086 0.92796 0.91979 0.92746 0.93573 0.83531 0.95576 0.90780 0.88822 0.88936 0.88727 0.88928 0.92589 0.92501 0.92074 0.86267 0.86581 0.92032 0.85660 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.39 37.15 0.35 -1.33 16 2 C 0.14 1.95 2.81 -68.87 -0.19 1.76 16 3 H 0.04 0.52 7.66 -51.93 -0.40 0.12 16 4 N -0.68 -8.41 5.70 -107.95 -0.62 -9.03 16 5 C 0.09 0.97 4.56 -3.82 -0.02 0.95 16 6 C -0.14 -1.30 5.95 -90.62 -0.54 -1.84 16 7 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 8 C -0.18 -1.50 9.90 -26.73 -0.26 -1.77 16 9 C -0.12 -0.95 5.18 -90.62 -0.47 -1.42 16 10 H 0.10 0.81 7.20 -51.93 -0.37 0.43 16 11 C -0.12 -0.93 5.10 -90.62 -0.46 -1.40 16 12 H 0.10 0.86 7.35 -51.93 -0.38 0.48 16 13 C -0.17 -1.25 9.90 -26.73 -0.26 -1.51 16 14 C -0.15 -1.09 6.41 -90.62 -0.58 -1.67 16 15 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 16 C -0.12 -0.75 9.05 37.16 0.34 -0.42 16 17 C -0.19 -3.23 4.71 -104.58 -0.49 -3.72 16 18 C -0.05 -0.98 9.00 -39.61 -0.36 -1.33 16 19 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16 20 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 21 O -0.18 -5.11 9.76 0.05 0.00 -5.11 16 22 C -0.39 -10.99 9.49 30.89 0.29 -10.69 16 23 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 24 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 25 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 26 Si 0.94 20.57 29.55 -169.99 -5.02 15.54 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 28 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 29 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 30 C -0.23 -5.11 9.17 -39.40 -0.36 -5.47 16 31 C -0.07 -1.20 9.66 -39.61 -0.38 -1.59 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.52 7.45 -51.93 -0.39 0.13 16 35 H 0.35 4.48 8.00 -39.30 -0.31 4.16 16 36 H 0.03 0.28 7.54 -51.93 -0.39 -0.11 16 37 H 0.07 0.79 7.32 -51.93 -0.38 0.41 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.81 8.03 -51.93 -0.42 0.40 16 40 H 0.09 0.67 8.05 -51.92 -0.42 0.25 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.34 7.40 -51.93 -0.38 -0.04 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.12 1.89 7.72 -52.48 -0.41 1.48 16 46 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 47 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 49 H 0.10 1.63 8.03 -52.48 -0.42 1.21 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -29.31 396.50 -11.24 -40.55 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -8.18 Total: 8.16 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -4.16 Total: -31.50 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.14 Total: -33.62 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: 0.00 Total: -5.11 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.31 -11.24 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886693688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.882 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds