Wall clock time and date at job start Tue Mar 31 2020 10:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47522 * 2 1 4 4 N 1.46901 * 109.47486 * 240.00470 * 2 1 3 5 5 C 1.46898 * 111.00133 * 84.99303 * 4 2 1 6 6 C 1.53001 * 109.46981 * 180.02562 * 5 4 2 7 7 H 1.08992 * 115.56326 * 29.31345 * 6 5 4 8 8 C 1.53004 * 117.49999 * 243.62518 * 6 5 4 9 9 C 1.52995 * 60.00057 * 252.51205 * 8 6 5 10 10 H 1.08997 * 117.49718 * 252.51179 * 9 8 6 11 11 C 1.53002 * 117.49863 * 107.51204 * 9 8 6 12 12 H 1.09000 * 115.54983 * 325.58211 * 11 9 8 13 13 C 1.53004 * 117.49983 * 179.87348 * 11 9 8 14 14 C 1.52995 * 59.99930 * 252.51219 * 13 11 9 15 15 H 1.09000 * 117.50086 * 252.50713 * 14 13 11 16 16 C 1.52999 * 117.51884 * 107.48095 * 14 13 11 17 17 C 1.50701 * 109.47423 * 120.00048 * 2 1 3 18 18 C 1.38302 * 119.92880 * 79.72426 * 17 2 1 19 19 C 1.38099 * 120.07143 * 179.72815 * 18 17 2 20 20 C 1.38886 * 119.92518 * 0.56816 * 19 18 17 21 21 O 1.35750 * 120.06625 * 179.67809 * 20 19 18 22 22 C 1.34830 * 116.99853 * 174.48512 * 21 20 19 23 23 H 1.08000 * 119.99617 * 5.07077 * 22 21 20 24 24 C 1.38653 * 120.00042 * 185.05635 * 22 21 20 25 25 N 1.31559 * 119.99954 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99887 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46930 * 90.00751 * 26 24 22 28 28 H 1.48497 * 109.47205 * 210.00209 * 26 24 22 29 29 H 1.48501 * 109.47357 * 330.00726 * 26 24 22 30 30 C 1.38876 * 119.86269 * 359.70736 * 20 19 18 31 31 C 1.38097 * 119.93130 * 359.97438 * 30 20 19 32 32 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46953 * 299.99757 * 1 2 3 34 34 H 1.09007 * 109.47250 * 59.99744 * 1 2 3 35 35 H 1.00892 * 111.00508 * 208.95599 * 4 2 1 36 36 H 1.09001 * 109.46446 * 60.01067 * 5 4 2 37 37 H 1.08999 * 109.47562 * 300.00511 * 5 4 2 38 38 H 1.09004 * 117.49746 * 145.01913 * 8 6 5 39 39 H 1.09005 * 117.51787 * 359.97438 * 8 6 5 40 40 H 1.09009 * 117.49363 * 0.02562 * 13 11 9 41 41 H 1.08998 * 117.49866 * 145.01646 * 13 11 9 42 42 H 1.09002 * 109.47664 * 351.36989 * 16 14 13 43 43 H 1.09002 * 109.47305 * 111.36946 * 16 14 13 44 44 H 1.08997 * 109.47304 * 231.36321 * 16 14 13 45 45 H 1.08003 * 119.96408 * 359.97438 * 18 17 2 46 46 H 1.07996 * 120.04114 * 180.27498 * 19 18 17 47 47 H 0.96995 * 119.99695 * 179.97438 * 25 24 22 48 48 H 1.07999 * 120.03573 * 179.97438 * 30 20 19 49 49 H 1.08007 * 119.96729 * 179.97438 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 1 2.3632 -1.5976 -3.6021 8 6 3.9298 -0.0849 -4.1734 9 6 2.6218 0.2190 -4.9067 10 1 2.4075 -0.3511 -5.8107 11 6 2.1341 1.6692 -4.9098 12 1 2.3471 2.2387 -4.0051 13 6 0.8276 1.9736 -5.6456 14 6 2.1636 2.4216 -6.2416 15 1 2.3957 3.4862 -6.2133 16 6 2.6791 1.6664 -7.4683 17 6 2.0324 -0.7104 1.2304 18 6 2.0608 -2.0927 1.2659 19 6 2.5259 -2.7467 2.3898 20 6 2.9542 -2.0148 3.4897 21 8 3.4058 -2.6548 4.5984 22 6 3.9125 -1.8874 5.5844 23 1 3.8709 -0.8111 5.5064 24 6 4.4868 -2.4802 6.6986 25 7 4.5377 -3.7913 6.7935 26 14 5.1881 -1.4169 8.0650 27 1 4.1291 -1.1373 9.0677 28 1 6.3135 -2.1311 8.7198 29 1 5.6793 -0.1372 7.4939 30 6 2.9191 -0.6270 3.4531 31 6 2.4591 0.0211 2.3238 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 2.9173 -1.1204 -1.0288 36 1 2.7588 1.0463 -2.1181 37 1 1.0870 0.6164 -2.5525 38 1 4.5760 -0.8549 -4.5950 39 1 4.4427 0.7485 -3.6934 40 1 0.3154 1.1406 -6.1271 41 1 0.1807 2.7434 -5.2249 42 1 2.0537 0.7914 -7.6457 43 1 2.6436 2.3208 -8.3393 44 1 3.7071 1.3490 -7.2941 45 1 1.7227 -2.6612 0.4121 46 1 2.5521 -3.8260 2.4152 47 1 4.9397 -4.2059 7.5727 48 1 3.2511 -0.0551 4.3070 49 1 2.4310 1.1004 2.2949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886693688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:49 Heat of formation + Delta-G solvation = 20.045761 kcal Electronic energy + Delta-G solvation = -25073.833346 eV Core-core repulsion = 21580.927448 eV Total energy + Delta-G solvation = -3492.905898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 17.49 seconds Orbital eigenvalues (eV) -40.89464 -40.07156 -38.96313 -37.33722 -36.00557 -34.25820 -32.01561 -31.65668 -29.37294 -29.32965 -27.37885 -26.64451 -24.54492 -23.82694 -23.33974 -22.48559 -21.54949 -21.24693 -19.76364 -19.55485 -18.81204 -17.19720 -17.08885 -16.56993 -16.30741 -15.94395 -15.68243 -15.54379 -15.28428 -15.18350 -14.53737 -14.42755 -14.07784 -14.04348 -13.87453 -13.84415 -13.54361 -13.50657 -13.28229 -13.01674 -12.89112 -12.62574 -12.39838 -12.33446 -12.25233 -12.13486 -12.09855 -11.95113 -11.73793 -11.56839 -11.18449 -11.07955 -10.78748 -10.53606 -10.14619 -9.77392 -9.31998 -8.91172 -8.47210 -6.15397 0.60304 0.68488 1.34491 1.43761 1.52037 2.17433 2.56968 2.81276 3.13023 3.21166 3.29327 3.52376 3.58511 3.87299 3.89960 3.97649 4.06706 4.15339 4.22751 4.32481 4.37773 4.40555 4.41823 4.49499 4.52076 4.59321 4.62320 4.75770 4.77288 4.90605 4.93449 4.96703 4.98306 4.99907 5.01528 5.01655 5.13141 5.16027 5.23426 5.26854 5.29114 5.38643 5.40874 5.45060 5.47565 5.58263 5.71421 5.74136 6.02909 6.20329 6.26639 6.50032 6.97444 7.78713 8.76002 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.027883 B = 0.002007 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.971410 B =13945.022773 C =14035.655684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.147 3.853 3 H 0.051 0.949 4 N -0.684 5.684 5 C 0.099 3.901 6 C -0.147 4.147 7 H 0.108 0.892 8 C -0.176 4.176 9 C -0.106 4.106 10 H 0.108 0.892 11 C -0.128 4.128 12 H 0.098 0.902 13 C -0.172 4.172 14 C -0.153 4.153 15 H 0.105 0.895 16 C -0.120 4.120 17 C -0.164 4.164 18 C -0.045 4.045 19 C -0.205 4.205 20 C 0.114 3.886 21 O -0.233 6.233 22 C -0.413 4.413 23 H 0.101 0.899 24 C -0.024 4.024 25 N -0.920 5.920 26 Si 1.019 2.981 27 H -0.263 1.263 28 H -0.271 1.271 29 H -0.253 1.253 30 C -0.242 4.242 31 C -0.064 4.064 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.343 0.657 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.146 0.854 46 H 0.111 0.889 47 H 0.272 0.728 48 H 0.118 0.882 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 13.270 -25.336 29.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.037 3.963 3 H 0.069 0.931 4 N -0.316 5.316 5 C -0.030 4.030 6 C -0.165 4.165 7 H 0.126 0.874 8 C -0.213 4.213 9 C -0.124 4.124 10 H 0.126 0.874 11 C -0.146 4.146 12 H 0.116 0.884 13 C -0.208 4.208 14 C -0.171 4.171 15 H 0.123 0.877 16 C -0.177 4.177 17 C -0.165 4.165 18 C -0.063 4.063 19 C -0.224 4.224 20 C 0.064 3.936 21 O -0.140 6.140 22 C -0.489 4.489 23 H 0.118 0.882 24 C -0.221 4.221 25 N -0.559 5.559 26 Si 0.838 3.162 27 H -0.188 1.188 28 H -0.196 1.196 29 H -0.177 1.177 30 C -0.262 4.262 31 C -0.083 4.083 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.045 0.955 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.163 0.837 46 H 0.129 0.871 47 H 0.081 0.919 48 H 0.136 0.864 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.774 12.636 -25.320 28.881 hybrid contribution 1.209 0.471 1.362 1.881 sum -4.565 13.108 -23.958 27.688 Atomic orbital electron populations 1.21742 0.93475 1.02126 1.01388 1.20143 0.95845 0.94507 0.85765 0.93101 1.60594 1.33570 1.33264 1.04161 1.21472 1.00263 0.92605 0.88647 1.22320 1.00893 0.99867 0.93422 0.87429 1.23155 0.90696 1.03298 1.04154 1.21756 1.00753 0.94449 0.95475 0.87358 1.21783 1.02050 0.94571 0.96170 0.88400 1.23139 0.90480 1.03401 1.03822 1.22440 1.00867 0.99543 0.94234 0.87673 1.21334 1.00915 0.99670 0.95782 1.19740 1.06441 0.93506 0.96785 1.20760 0.95551 0.94126 0.95861 1.20487 1.09039 0.99529 0.93376 1.19956 0.93555 0.92452 0.87683 1.83945 1.70033 1.36524 1.23454 1.21811 1.38438 0.91368 0.97332 0.88153 1.26595 0.96920 0.97836 1.00770 1.70187 1.44060 1.10963 1.30652 0.84587 0.78013 0.77405 0.76201 1.18798 1.19577 1.17693 1.21211 1.10277 0.93505 1.01163 1.20933 0.95749 0.99898 0.91700 0.92766 0.92636 0.91658 0.83895 0.95520 0.90540 0.88278 0.89201 0.88588 0.88434 0.92477 0.91701 0.92274 0.83667 0.87056 0.91858 0.86420 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.39 71.98 0.68 -2.15 16 2 C 0.15 3.46 2.81 44.17 0.12 3.58 16 3 H 0.05 1.14 7.66 -2.38 -0.02 1.12 16 4 N -0.68 -14.70 5.70 -495.45 -2.82 -17.53 16 5 C 0.10 1.77 4.56 86.30 0.39 2.17 16 6 C -0.15 -2.40 5.95 -10.79 -0.06 -2.46 16 7 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 8 C -0.18 -2.65 9.90 30.59 0.30 -2.35 16 9 C -0.11 -1.49 5.18 -10.79 -0.06 -1.55 16 10 H 0.11 1.44 7.20 -2.39 -0.02 1.42 16 11 C -0.13 -1.73 5.10 -10.79 -0.06 -1.78 16 12 H 0.10 1.43 7.35 -2.39 -0.02 1.41 16 13 C -0.17 -2.08 9.90 30.59 0.30 -1.77 16 14 C -0.15 -1.82 6.41 -10.80 -0.07 -1.89 16 15 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 16 C -0.12 -1.25 9.05 71.98 0.65 -0.60 16 17 C -0.16 -5.07 4.71 -19.83 -0.09 -5.16 16 18 C -0.04 -1.52 9.00 22.25 0.20 -1.32 16 19 C -0.21 -8.85 9.99 22.39 0.22 -8.63 16 20 C 0.11 5.73 6.65 22.58 0.15 5.88 16 21 O -0.23 -14.19 9.76 -22.74 -0.22 -14.41 16 22 C -0.41 -24.29 9.49 67.92 0.64 -23.65 16 23 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 24 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 25 N -0.92 -56.94 13.67 21.61 0.30 -56.64 16 26 Si 1.02 43.11 29.55 68.60 2.03 45.14 16 27 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 30 C -0.24 -10.61 9.17 22.39 0.21 -10.40 16 31 C -0.06 -2.21 9.66 22.25 0.21 -2.00 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.21 7.45 -2.38 -0.02 1.19 16 35 H 0.34 7.89 8.00 -89.70 -0.72 7.18 16 36 H 0.03 0.49 7.54 -2.39 -0.02 0.47 16 37 H 0.08 1.36 7.32 -2.39 -0.02 1.34 16 38 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.09 1.41 8.03 -2.38 -0.02 1.39 16 40 H 0.10 1.14 8.05 -2.38 -0.02 1.12 16 41 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 0.58 7.40 -2.39 -0.02 0.56 16 43 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.15 4.22 7.72 -2.91 -0.02 4.19 16 46 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 47 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 48 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 49 H 0.14 3.81 8.03 -2.91 -0.02 3.79 16 Total: -1.00 -67.27 396.50 3.71 -63.56 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: 0.21 Total: 34.85 kcal Atomic # 6 Polarization: -59.19 SS G_CDS: 4.22 Total: -54.97 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -2.53 Total: -74.17 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.22 Total: -14.41 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.27 3.71 -63.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886693688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.609 kcal (2) G-P(sol) polarization free energy of solvation -67.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.49 seconds